Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Forward (+)

7522166 .. 7522772

Gene Structure 607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG091800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTATTGCACGCCTTTGGAGCTAACGCTGGTCTCCGCCCATGACATCAAGTACGTCAACCTCTTCTCCAAGATGAACGTCTACGCCGTCGTTTCGATCACCGGCGGCGCCAAGAAGCAGAAGCTCAAGACCCCCGTCCACAAGGGCTGTGGCACCAATCCCAAGTGGAACCACTCCCTCAAGTTCACGCTCGACGACGCCGCTCTCAACCAGGACCACCTCAAAGTCGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

78

Amino Acids

8.71

Weight (kDa)

9.2

Isoelectric Point (pI)

24.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 78	1e-12	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	107, 152
AccBSI	CCGCTC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	3 cut(s)	36, 105, 201
AcyI	GRCGYC	2 cut(s)	108, 198
AfaI	GTAC	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	22, 124
AluI	AGCT	2 cut(s)	22, 124
Alw26I	GTCTC	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	214
BanI	GGYRCC	2 cut(s)	107, 152
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	37
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	2 cut(s)	106, 201
BlsI	GCNGC	2 cut(s)	107, 202
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	3 cut(s)	109, 154, 170
BmrFI	CCNGG	1 cut(s)	212
BoxI	GACNNNNGTC	1 cut(s)	134
BpuEI	CTTGAG	2 cut(s)	110, 164
BsaHI	GRCGYC	2 cut(s)	108, 198
BsaI	GGTCTC	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bse118I	RCCGGY	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	212
BshNI	GGYRCC	2 cut(s)	107, 152
BsiSI	CCGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	37
Bso31I	GGTCTC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	3 cut(s)	36, 105, 201
BspLI	GGNNCC	3 cut(s)	109, 154, 170
BspT107I	GGYRCC	2 cut(s)	107, 152
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	1 cut(s)	96
BssNI	GRCGYC	2 cut(s)	108, 198
Bst2UI	CCWGG	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	2 cut(s)	108, 198
BstC8I	GCNNGC	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	212
BstPAI	GACNNNNGTC	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	11
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	214
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	52
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	3 cut(s)	22, 124, 147
CviKI_1	RGCY	3 cut(s)	22, 124, 147
CviQI	GTAC	1 cut(s)	52
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	210
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
FaeI	CATG	1 cut(s)	44
FaiI	YATR	1 cut(s)	42
FatI	CATG	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	106, 201
Fsp4HI	GCNGC	2 cut(s)	106, 201
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	106, 201
HaeII	RGCGCY	1 cut(s)	111
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	2 cut(s)	108, 198
Hin1II	CATG	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	4 cut(s)	58, 82, 139, 186
Hpy188III	TCNNGA	2 cut(s)	127, 229
Hpy8I	GTNNAC	4 cut(s)	58, 82, 139, 186
Hpy99I	CGWCG	3 cut(s)	92, 197, 200
HpyCH4IV	ACGT	2 cut(s)	54, 78
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpySE526I	ACGT	2 cut(s)	54, 78
Hsp92I	GRCGYC	2 cut(s)	108, 198
Hsp92II	CATG	1 cut(s)	44
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	4 cut(s)	14, 115, 197, 224
MaeII	ACGT	2 cut(s)	54, 78
MalI	GATC	1 cut(s)	98
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	1 cut(s)	96
MboII	GAAGA	1 cut(s)	55
Mly113I	GGCGCC	1 cut(s)	108
MnlI	CCTC	3 cut(s)	71, 188, 230
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	19
NarI	GGCGCC	1 cut(s)	108
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	3 cut(s)	109, 154, 170
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	107, 202
PluTI	GGCGCC	1 cut(s)	111
PshAI	GACNNNNGTC	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	3 cut(s)	109, 154, 170
PspPI	GGNCC	1 cut(s)	214
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SatI	GCNGC	2 cut(s)	106, 201
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	6 cut(s)	24, 57, 63, 81, 126, 222
SfoI	GGCGCC	1 cut(s)	109
SgrAI	CRCCGGYG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	2 cut(s)	125, 179
SmoI	CTYRAG	2 cut(s)	125, 179
SsiI	CCGC	3 cut(s)	36, 105, 201
SspDI	GGCGCC	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	210
TaiI	ACGT	2 cut(s)	57, 81
TaqI	TCGA	3 cut(s)	95, 192, 228
TauI	GCSGC	2 cut(s)	108, 203
TspDTI	ATGAA	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.