Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001785

Physical Location & Seq

Genomic Coordinates Reverse (-)

28449925 .. 28452617

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G322500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGGATTTGCTGGGGTGCTCTAACTGATAACTCAATACCAACAAGGCCATCTGGAGACAGGCCTTTGGAGATAACAATCGTCTCAGCCAGCGACCTCAAGGATGTCAATATGTTCTCCAAGATGGACGTCTACGCCGCCGTTTCGGTCTCCGGCGACCCCCGCAACAAGAAGCAGACGACCAAGACCCCCGTCGCCAAAGACGGCGGCACAAACCCTAAGTGGAACAACTACTCCATCAAGTTCACTCTCGACGACGCCGCTTTGCTCCACAACCGCCTCACTCTCAACATCAAGCTCGTCTCCGAGCGCAGCTTGGGCGACACCAAGATCGGCAAAGTCCAAATCCCCCTCAAGGAGCTCTTCGACAGCTTGGGCGGCGGTGATGATCAGAAGAAGCAGATCAAGCACGTCGGTTACAGCGTTCGAACTTCCAGTGGGAAGCCCAAAGGATCCATCAATTTCGGGTACAAATTTGGGGACAAGTTCACAGTTCCTGTTCCTGAGGCCCATAAGAAAACCCATGAGCCCGTGATGGCTTACCCATCTGGGCATCCCGGGTCAAGCTCCGGGTACCCGCCTGCGGCCCATGCGGGTCCGTATCCGCCTGCCCAAGCTTACCCGTACCCGCCGCCTGGTGGGTACCCACCACCGCCTCATCAGCAGCCGGGTTATGGGTACGCACCACCGCCGCAGGCCGGGTACGGTTACCCGCCTCAGTCAGGCTATGGGTACCCGCCGCAGAAGCCTAAGAGGGGAGGAGGCAACATGGCGCTTGGCATGGGAGCTGGACTGTTGGGTGGTTTGTTGATTGGAGATATGATTGGAGATGTTGGTGAGATGGCTGCCTATGATGCTGGGTATGATGCTGGGTTTGGTGGTGATGACTTTGGCGGTGGCTTTGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05168 ko05169 map00230 map00240 map01100 map03020 map05016 map05168 map05169

Pfam Domains

Protein Families

Protein Analysis

304

Amino Acids

31.99

Weight (kDa)

8.64

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09070
fragaria_vesca	FvH4_6g06320 FvH4_6g06320 FvH4_6g06321
malus_domestica	MD04G1202300.v1.1 MD12G1216300.v1.1
prunus_persica	Prupe.6G322500_v2.0.a1 Prupe.6G322500_v2.0.a1 Prupe.6G322600_v2.0.a1
pyrus_communis	pycom04g17850 pycom12g20180
rosa_chinensis	RchiOBHm_Chr3g0455361 RchiOBHm_Chr3g0455371
rosa_laevigata	RLG00000025110 RLG00000025366
rosa_multiflora	Rmu_co8331519.1_g000001 Rmu_sc0002169.1_g000048 Rmu_sc0002169.1_g000049 Rmu_sc0002435.1_g000019 Rmu_sc0003222.1_g000014 Rmu_sc0004087.1_g000009 Rmu_sc0004343.1_g000002 Rmu_sc0004894.1_g000012 Rmu_sc0012909.1_g000009 Rmu_sc0024960.1_g000001 Rmu_sc0038181.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379190 Rroxscaffold_6G00420510 Rroxscaffold_6G00424320 Rroxscaffold_6G00424330
rosa_rugosa	Rorug03G0006800 Rorug03G0006900 Rorug03G0033900 Rorug03G0287400
rosa_samantha	Rh3AG066400 Rh3AG066500 Rh3AG091800 Rh3BG068700 Rh3BG068800 Rh3CG067100 Rh3CG067200 Rh3CG095600 Rh3DG068600 Rh4BG236100
rosa_wichuraiana	Rw3G005240 Rw3G005250 Rw7G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
Acc65I	GGTACC	3 cut(s)	573, 642, 732
AccB1I	GGYRCC	3 cut(s)	573, 642, 732
AccI	GTMKAC	1 cut(s)	132
AclWI	GGATC	2 cut(s)	447, 460
AcsI	RAATTY	1 cut(s)	473
AcyI	GRCGYC	2 cut(s)	129, 258
AfaI	GTAC	7 cut(s)	470, 575, 626, 644, 680, 704, 734
AfiI	CCNNNNNNNGG	8 cut(s)	355, 583, 635, 638, 674, 698, 722, 755
AjiI	CACGTC	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	634
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
AluBI	AGCT	7 cut(s)	298, 315, 361, 372, 567, 617, 788
AluI	AGCT	7 cut(s)	298, 315, 361, 372, 567, 617, 788
Alw21I	GWGCWC	2 cut(s)	22, 363
Alw26I	GTCTC	4 cut(s)	51, 88, 154, 307
AlwI	GGATC	2 cut(s)	447, 460
AlwNI	CAGNNNCTG	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	5 cut(s)	47, 62, 507, 585, 696
ApeKI	GCWGC	3 cut(s)	312, 664, 845
ApoI	RAATTY	1 cut(s)	473
Asp718I	GGTACC	3 cut(s)	573, 642, 732
AspLEI	GCGC	2 cut(s)	312, 775
AspS9I	GGNCC	3 cut(s)	508, 586, 596
AsuC2I	CCSGG	5 cut(s)	558, 559, 571, 669, 700
AsuHPI	GGTGA	3 cut(s)	395, 848, 893
AsuII	TTCGAA	1 cut(s)	427
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	596
AxyI	CCTNAGG	1 cut(s)	504
BamHI	GGATCC	1 cut(s)	452
BanI	GGYRCC	3 cut(s)	573, 642, 732
BanII	GRGCYC	2 cut(s)	363, 531
Bbv12I	GWGCWC	2 cut(s)	22, 363
BbvI	GCAGC	3 cut(s)	324, 676, 832
BccI	CCATC	7 cut(s)	58, 118, 245, 464, 529, 553, 835
BceAI	ACGGC	2 cut(s)	125, 220
BciT130I	CCWGG	1 cut(s)	636
BciVI	GTATCC	1 cut(s)	612
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	5 cut(s)	558, 559, 571, 669, 700
BcoDI	GTCTC	4 cut(s)	51, 88, 154, 307
BfaI	CTAG	1 cut(s)	910
BfoI	RGCGCY	1 cut(s)	776
BfuI	GTATCC	1 cut(s)	612
Bme1390I	CCNGG	6 cut(s)	558, 559, 571, 636, 669, 700
Bme18I	GGWCC	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	557
BmgBI	CACGTC	1 cut(s)	412
BmgT120I	GGNCC	3 cut(s)	508, 586, 596
BmiI	GGNNCC	5 cut(s)	454, 575, 597, 644, 734
BmrFI	CCNGG	6 cut(s)	558, 559, 571, 636, 669, 700
BmsI	GCATC	3 cut(s)	562, 844, 856
BoxI	GACNNNNGTC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	427
BpuEI	CTTGAG	2 cut(s)	83, 338
BpuMI	CCSGG	5 cut(s)	558, 559, 571, 669, 700
BsaBI	GATNNNNATC	1 cut(s)	77
BsaHI	GRCGYC	2 cut(s)	129, 258
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	557
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	8 cut(s)	355, 583, 635, 638, 674, 698, 722, 755
Bse1I	ACTGG	1 cut(s)	435
Bse21I	CCTNAGG	1 cut(s)	504
Bse8I	GATNNNNATC	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	2 cut(s)	109, 553
BseJI	GATNNNNATC	1 cut(s)	77
BseLI	CCNNNNNNNGG	8 cut(s)	355, 583, 635, 638, 674, 698, 722, 755
BseMII	CTCAG	3 cut(s)	99, 495, 731
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	1 cut(s)	774
BseXI	GCAGC	3 cut(s)	324, 676, 832
BseYI	CCCAGC	3 cut(s)	12, 857, 869
BshFI	GGCC	5 cut(s)	49, 64, 509, 587, 698
BshNI	GGYRCC	3 cut(s)	573, 642, 732
BsiHKAI	GWGCWC	2 cut(s)	22, 363
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	5 cut(s)	153, 558, 570, 668, 699
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	8 cut(s)	355, 583, 635, 638, 674, 698, 722, 755
BsmAI	GTCTC	4 cut(s)	51, 88, 154, 307
BsmBI	CGTCTC	2 cut(s)	88, 307
BsmFI	GGGAC	1 cut(s)	494
BsnI	GGCC	5 cut(s)	49, 64, 509, 587, 698
Bso31I	GGTCTC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	557
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1286I	GDGCHC	3 cut(s)	22, 363, 531
Bsp143I	GATC	4 cut(s)	330, 388, 402, 452
BspANI	GGCC	5 cut(s)	49, 64, 509, 587, 698
BspCNI	CTCAG	3 cut(s)	98, 496, 730
BspLI	GGNNCC	5 cut(s)	454, 575, 597, 644, 734
BspPI	GGATC	2 cut(s)	447, 460
BspQI	GCTCTTC	1 cut(s)	368
BspT104I	TTCGAA	1 cut(s)	427
BspT107I	GGYRCC	3 cut(s)	573, 642, 732
BspTNI	GGTCTC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	435
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	4 cut(s)	330, 388, 402, 452
BssNI	GRCGYC	2 cut(s)	129, 258
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	3 cut(s)	493, 707, 795
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	2 cut(s)	129, 258
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	4 cut(s)	91, 582, 609, 696
BstDEI	CTNAG	5 cut(s)	85, 219, 504, 717, 750
BstEII	GGTNACC	1 cut(s)	707
BstENI	CCTNNNNNAGG	1 cut(s)	720
BstF5I	GGATG	2 cut(s)	109, 553
BstH2I	RGCGCY	1 cut(s)	776
BstHHI	GCGC	2 cut(s)	312, 775
BstKTI	GATC	4 cut(s)	333, 391, 405, 455
BstMAI	GTCTC	4 cut(s)	51, 88, 154, 307
BstMBI	GATC	4 cut(s)	330, 388, 402, 452
BstMWI	GCNNNNNNNGC	8 cut(s)	162, 318, 378, 406, 590, 661, 745, 854
BstNI	CCWGG	1 cut(s)	636
BstPAI	GACNNNNGTC	1 cut(s)	191
BstPI	GGTNACC	1 cut(s)	707
BstSCI	CCNGG	6 cut(s)	556, 557, 569, 634, 667, 698
BstV1I	GCAGC	3 cut(s)	324, 676, 832
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
Bsu36I	CCTNAGG	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	612
BsuRI	GGCC	5 cut(s)	49, 64, 509, 587, 698
BtrI	CACGTC	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	109, 553
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	4 cut(s)	91, 582, 609, 696
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	2 cut(s)	312, 775
Cfr13I	GGNCC	3 cut(s)	508, 586, 596
Cfr9I	CCCGGG	1 cut(s)	557
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	7 cut(s)	469, 574, 625, 643, 679, 703, 733
CviAII	CATG	4 cut(s)	524, 590, 769, 781
CviQI	GTAC	7 cut(s)	469, 574, 625, 643, 679, 703, 733
DdeI	CTNAG	5 cut(s)	85, 219, 504, 717, 750
DpnI	GATC	4 cut(s)	332, 390, 404, 454
DpnII	GATC	4 cut(s)	330, 388, 402, 452
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
EciI	GGCGGA	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	361
Eco147I	AGGCCT	1 cut(s)	64
Eco24I	GRGCYC	2 cut(s)	363, 531
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	596
Eco53kI	GAGCTC	1 cut(s)	361
Eco81I	CCTNAGG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	557
Eco91I	GGTNACC	1 cut(s)	707
EcoICRI	GAGCTC	1 cut(s)	361
EcoNI	CCTNNNNNAGG	1 cut(s)	720
EcoO65I	GGTNACC	1 cut(s)	707
EcoRII	CCWGG	1 cut(s)	634
EcoT38I	GRGCYC	2 cut(s)	363, 531
Esp3I	CGTCTC	2 cut(s)	88, 307
FaeI	CATG	4 cut(s)	527, 593, 772, 784
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	4 cut(s)	523, 589, 768, 780
FauI	CCCGC	6 cut(s)	170, 585, 586, 636, 720, 744
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	2 cut(s)	116, 540
FriOI	GRGCYC	2 cut(s)	363, 531
FspBI	CTAG	1 cut(s)	910
GlaI	GCGC	2 cut(s)	311, 774
GsaI	CCCAGC	3 cut(s)	16, 861, 873
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	776
HaeIII	GGCC	5 cut(s)	49, 64, 509, 587, 698
HapII	CCGG	5 cut(s)	153, 558, 570, 668, 699
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	2 cut(s)	312, 775
Hin1I	GRCGYC	2 cut(s)	129, 258
Hin1II	CATG	4 cut(s)	527, 593, 772, 784
Hin6I	GCGC	2 cut(s)	310, 773
HinP1I	GCGC	2 cut(s)	310, 773
HindIII	AAGCTT	1 cut(s)	615
HpaII	CCGG	5 cut(s)	153, 558, 570, 668, 699
HphI	GGTGA	3 cut(s)	395, 848, 893
Hpy166II	GTNNAC	3 cut(s)	133, 246, 489
Hpy188I	TCNGA	2 cut(s)	307, 393
Hpy188III	TCNNGA	3 cut(s)	54, 251, 503
Hpy8I	GTNNAC	3 cut(s)	133, 246, 489
Hpy99I	CGWCG	4 cut(s)	197, 257, 260, 416
HpyCH4III	ACNGT	3 cut(s)	493, 707, 795
HpyCH4IV	ACGT	2 cut(s)	129, 411
HpyF10VI	GCNNNNNNNGC	8 cut(s)	162, 318, 378, 406, 590, 661, 745, 854
HpyF3I	CTNAG	5 cut(s)	85, 219, 504, 717, 750
HpySE526I	ACGT	2 cut(s)	129, 411
Hsp92I	GRCGYC	2 cut(s)	129, 258
Hsp92II	CATG	4 cut(s)	527, 593, 772, 784
HspAI	GCGC	2 cut(s)	310, 773
KpnI	GGTACC	3 cut(s)	577, 646, 736
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	330, 388, 402, 452
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	4 cut(s)	273, 358, 572, 785
Lsp1109I	GCAGC	3 cut(s)	324, 676, 832
LweI	GCATC	3 cut(s)	562, 844, 856
MaeI	CTAG	1 cut(s)	910
MaeII	ACGT	2 cut(s)	129, 411
MaeIII	GTNAC	2 cut(s)	416, 707
MalI	GATC	4 cut(s)	332, 390, 404, 454
MboI	GATC	4 cut(s)	330, 388, 402, 452
MboII	GAAGA	2 cut(s)	355, 406
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	3 cut(s)	22, 363, 531
MluCI	AATT	2 cut(s)	460, 473
MnlI	CCTC	9 cut(s)	107, 290, 362, 499, 666, 726, 747, 752, 755
MspI	CCGG	5 cut(s)	153, 558, 570, 668, 699
MspR9I	CCNGG	6 cut(s)	558, 559, 571, 636, 669, 700
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	8 cut(s)	162, 318, 378, 406, 590, 661, 745, 854
NciI	CCSGG	5 cut(s)	558, 559, 571, 669, 700
NdeII	GATC	4 cut(s)	330, 388, 402, 452
NlaIII	CATG	4 cut(s)	527, 593, 772, 784
NlaIV	GGNNCC	5 cut(s)	454, 575, 597, 644, 734
NspV	TTCGAA	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PshAI	GACNNNNGTC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	634
PspEI	GGTNACC	1 cut(s)	707
PspFI	CCCAGC	3 cut(s)	12, 857, 869
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	5 cut(s)	454, 575, 597, 644, 734
PspPI	GGNCC	3 cut(s)	508, 586, 596
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	7 cut(s)	470, 575, 626, 644, 680, 704, 734
RsaNI	GTAC	7 cut(s)	469, 574, 625, 643, 679, 703, 733
SacI	GAGCTC	1 cut(s)	363
SapI	GCTCTTC	1 cut(s)	368
Sau3AI	GATC	4 cut(s)	330, 388, 402, 452
Sau96I	GGNCC	3 cut(s)	508, 586, 596
ScrFI	CCNGG	6 cut(s)	558, 559, 571, 636, 669, 700
SduI	GDGCHC	3 cut(s)	22, 363, 531
SfaNI	GCATC	3 cut(s)	562, 844, 856
SfuI	TTCGAA	1 cut(s)	427
SinI	GGWCC	1 cut(s)	596
SmaI	CCCGGG	1 cut(s)	559
SmlI	CTYRAG	2 cut(s)	98, 353
SmoI	CTYRAG	2 cut(s)	98, 353
Sse9I	AATT	2 cut(s)	460, 473
SseBI	AGGCCT	1 cut(s)	64
SspMI	CTAG	1 cut(s)	910
SstI	GAGCTC	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	6 cut(s)	556, 557, 569, 634, 667, 698
TaaI	ACNGT	3 cut(s)	493, 707, 795
TaiI	ACGT	2 cut(s)	132, 414
TaqI	TCGA	3 cut(s)	252, 366, 427
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	460, 473
TauI	GCSGC	8 cut(s)	140, 210, 263, 381, 587, 634, 694, 742
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	3 cut(s)	312, 664, 845
TspGWI	ACGGA	1 cut(s)	588
TspMI	CCCGGG	1 cut(s)	557
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	596
XagI	CCTNNNNNAGG	1 cut(s)	720
XapI	RAATTY	1 cut(s)	473
XmaI	CCCGGG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	910
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.