Rh4BG236100

Protein kinase C conserved region 2 (CalB)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
40197396 .. 40197668
273 bp
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UTR
Exon/CDS
Intron
Rh4BG236100.1

Sequence Viewer

Length: 273 bp
ATGGATTGCAAGCCTTTGGAAATAACGGTGTTCGGCGCAAATGACATCAAGGGCGTGAACATGTTCTCCAAGATGGACGTCTACGCCGTCGTCTCGGTCTCCGGTAACGGCGTCAGGAAGCAAAAGCTCCGCACCCCCATCCACAAAGACGCCGACACCAACCCCAAATGGAACCACACCCTCAAGTTCACCTTCGACAACTCCGCCCTCGACCACCTCCAAATCAAAATCAAGCTCATCTGTGACCGTACCTTCGGCGAGACCAAGTTCTGA

Protein Analysis

90

Amino Acids

10.23

Weight (kDa)

9.23

Isoelectric Point (pI)

18.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 6 - 88 1.6e-12 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 81
AciI CCGC 2 cut(s) 130, 204
AcyI GRCGYC 3 cut(s) 78, 111, 150
AfaI GTAC 1 cut(s) 250
AflIII ACRYGT 1 cut(s) 60
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
AluBI AGCT 2 cut(s) 127, 235
AluI AGCT 2 cut(s) 127, 235
Alw26I GTCTC 3 cut(s) 97, 103, 254
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 181
BccI CCATC 2 cut(s) 67, 146
BceAI ACGGC 2 cut(s) 71, 124
BcoDI GTCTC 3 cut(s) 97, 103, 254
BmiI GGNNCC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 167
BsaHI GRCGYC 3 cut(s) 78, 111, 150
BsaI GGTCTC 2 cut(s) 103, 254
BsaWI WCCGGW 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
BseGI GGATG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 102
BsmAI GTCTC 3 cut(s) 97, 103, 254
BsmBI CGTCTC 1 cut(s) 97
Bso31I GGTCTC 2 cut(s) 103, 254
BspACI CCGC 2 cut(s) 130, 204
BspLI GGNNCC 1 cut(s) 173
BspTNI GGTCTC 2 cut(s) 103, 254
BssNI GRCGYC 3 cut(s) 78, 111, 150
Bst4CI ACNGT 2 cut(s) 28, 248
BstACI GRCGYC 3 cut(s) 78, 111, 150
BstC8I GCNNGC 1 cut(s) 11
BstF5I GGATG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 38
BstMAI GTCTC 3 cut(s) 97, 103, 254
BstNSI RCATGY 1 cut(s) 64
BtsCI GGATG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 11
CfoI GCGC 1 cut(s) 38
CseI GACGC 2 cut(s) 100, 158
Csp6I GTAC 1 cut(s) 249
CviAII CATG 1 cut(s) 61
CviJI RGCY 3 cut(s) 13, 127, 235
CviKI_1 RGCY 3 cut(s) 13, 127, 235
CviQI GTAC 1 cut(s) 249
EciI GGCGGA 1 cut(s) 193
Eco31I GGTCTC 2 cut(s) 103, 254
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 1 cut(s) 64
FaiI YATR 1 cut(s) 62
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 1 cut(s) 60
FblI GTMKAC 1 cut(s) 81
FokI GGATG 1 cut(s) 125
GlaI GCGC 1 cut(s) 37
HapII CCGG 1 cut(s) 102
HgaI GACGC 2 cut(s) 100, 158
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 3 cut(s) 78, 111, 150
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HpaII CCGG 1 cut(s) 102
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 3 cut(s) 58, 82, 189
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 3 cut(s) 58, 82, 189
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 202, 262
HpyCH4III ACNGT 2 cut(s) 28, 248
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 3 cut(s) 78, 111, 150
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 2 cut(s) 100, 115
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 2 cut(s) 104, 242
MnlI CCTC 3 cut(s) 191, 218, 227
MroXI GAANNNNTTC 1 cut(s) 62
MspI CCGG 1 cut(s) 102
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 173
NmuCI GTSAC 1 cut(s) 242
NspI RCATGY 1 cut(s) 64
PciI ACATGT 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 62
PscI ACATGT 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 173
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SetI ASST 6 cut(s) 81, 129, 194, 219, 237, 254
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SsiI CCGC 2 cut(s) 130, 204
TaaI ACNGT 2 cut(s) 28, 248
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 195, 210
TaqII GACCGA 1 cut(s) 85
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
XceI RCATGY 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 62
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.