AT1G09645

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001184
Physical Location & Seq
Forward (+)
3122926 .. 3124667
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09645.1

Sequence Viewer

Length: 321 bp
ATGAGACAGAACTCAGCAACTGGTGGTCTTTCATGGCGGCGTTTACTGTTCTTCGCTTCGATTGGTTTGCAGTTCTTCTTAGGTCTATCGGGTGATTCCAAGAACACGAATGCAGGAGTTAAGACAGAATCTCATACTTCTTCCAGCAAAACAGGCACAAAAGTTATCCTTGTTCTAGTTGGATTTGTGGCTGTGGCCATGTTCTCGTTCTTCCTATACAAGCTATGGCAAAAGAAGAAAAGAGACGAGCAGTATGCTCGACTGTTGAAGCTGTTTGAGGAAGATGATGAACTCGAGGTTGAATTAGGTCTTCGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.01

Weight (kDa)

9.34

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 37
AcoI YGGCCR 1 cut(s) 195
AgsI TTSAA 2 cut(s) 268, 302
AluBI AGCT 2 cut(s) 223, 271
AluI AGCT 2 cut(s) 223, 271
Alw26I GTCTC 1 cut(s) 237
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 293
BalI TGGCCA 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 302
BcgI CGANNNNNNTGC 6 cut(s) 49, 83, 236, 239, 270, 273
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 25
BshFI GGCC 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 237
BsmBI CGTCTC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 293
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 26
BsrI ACTGG 1 cut(s) 25
Bst4CI ACNGT 2 cut(s) 48, 264
BstDEI CTNAG 2 cut(s) 13, 79
BstMAI GTCTC 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 197
CaiI CAGNNNCTG 1 cut(s) 20
CviAII CATG 2 cut(s) 33, 199
CviJI RGCY 4 cut(s) 191, 197, 223, 271
CviKI_1 RGCY 4 cut(s) 191, 197, 223, 271
DdeI CTNAG 2 cut(s) 13, 79
EaeI YGGCCR 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 293
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 2 cut(s) 36, 202
FaiI YATR 6 cut(s) 34, 135, 200, 217, 226, 255
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 2 cut(s) 32, 198
Fnu4HI GCNGC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 2 cut(s) 36, 202
HinfI GANTC 2 cut(s) 95, 128
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 48, 264
HpyCH4V TGCA 2 cut(s) 70, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 2 cut(s) 13, 79
Hsp92II CATG 2 cut(s) 36, 202
LpnPI CCDG 4 cut(s) 6, 99, 138, 157
MaeI CTAG 1 cut(s) 176
MboII GAAGA 7 cut(s) 43, 67, 132, 202, 247, 293, 302
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 1 cut(s) 302
MluNI TGGCCA 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 2 cut(s) 271, 289
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
MseI TTAA 2 cut(s) 120, 319
Msp20I TGGCCA 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 153
NlaIII CATG 2 cut(s) 36, 202
PaeR7I CTCGAG 1 cut(s) 293
PctI GAATGC 1 cut(s) 115
PfeI GAWTC 2 cut(s) 95, 128
PkrI GCNGC 1 cut(s) 39
PspXI VCTCGAGB 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 20
SaqAI TTAA 2 cut(s) 120, 319
SatI GCNGC 1 cut(s) 38
SetI ASST 5 cut(s) 85, 225, 273, 300, 310
Sfr274I CTCGAG 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 302
SsiI CCGC 1 cut(s) 37
SspMI CTAG 1 cut(s) 176
TaaI ACNGT 2 cut(s) 48, 264
TaqI TCGA 4 cut(s) 59, 259, 294, 313
TasI AATT 1 cut(s) 302
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 2 cut(s) 95, 128
Tru1I TTAA 2 cut(s) 120, 319
Tru9I TTAA 2 cut(s) 120, 319
TspDTI ATGAA 2 cut(s) 21, 303
XhoI CTCGAG 1 cut(s) 293
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.