Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001184

Physical Location & Seq

Genomic Coordinates Reverse (-)

55559451 .. 55560001

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG403000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAATGGATCCGGAACCGGCAACCGATGCGTGCAATTCCTCCTCCTCCTTCTCACAATCCCGTCGTTGTTTGATTCAGTTCGGGCAAAGGACGACGACGGAAGCAGCAACAAAGCCGGTGGCTCTTCGGTAGCGCTGAAGGTAGTTATTGTGTTACTGGGCGTGGCGGCGGTGGTTGGGTTCGGTGTGTTTCTGTTCAGGATATGGCAGAGGAAGAAGAGAGAGGAGCAGCACGCCAGGCTTCTCAAGTTGTTTGAAGACGACGATGAGCTCGAGGTCGAACTTGGAATTAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.89

Weight (kDa)

5.79

Isoelectric Point (pI)

21.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09645 AT1G57765 AT1G57765
fragaria_vesca	FvH4_5g28260 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580
malus_domestica	MD05G1210300.v1.1 MD08G1216400.v1.1 MD08G1244000.v1.1 MD15G1403500.v1.1 MD15G1438300.v1.1
prunus_persica	Prupe.1G549500_v2.0.a1 Prupe.1G549500_v2.0.a1 Prupe.1G581300_v2.0.a1 Prupe.1G581300_v2.0.a1 Prupe.1G581300_v2.0.a1 Prupe.1G581300_v2.0.a1 Prupe.1G581300_v2.0.a1
pyrus_communis	pycom08g21170 pycom15g36080 pycom15g38630
rosa_chinensis	RchiOBHm_Chr3g0495521 RchiOBHm_Chr5g0063911 RchiOBHm_Chr7g0220501 RchiOBHm_Chr7g0229261 RchiOBHm_Chr7g0230041
rosa_laevigata	RLG00000001519 RLG00000007722
rosa_multiflora	Rmu_sc0000693.1_g000033 Rmu_sc0012148.1_g000003 Rmu_sc0015248.1_g000005 Rmu_ssc0000189.1_g000047
rosa_roxburghii	Rroxscaffold_3G00230430 Rroxscaffold_3G00239350
rosa_rugosa	Rorug07G0194100 Rorug07G0258100
rosa_samantha	Rh3AG321600 Rh5BG262600 Rh5DG271600 Rh7AG335100 Rh7BG326200 Rh7CG352800 Rh7CG427100 Rh7DG331800 Rh7DG403000
rosa_wichuraiana	Rw7G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	11
AciI	CCGC	2 cut(s)	167, 170
AclWI	GGATC	2 cut(s)	3, 16
AcuI	CTGAAG	1 cut(s)	158
AfeI	AGCGCT	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw21I	GWGCWC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	3, 16
Ama87I	CYCGRG	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	11
Aor51HI	AGCGCT	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	105, 229
AspLEI	GCGC	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	117, 241
BciT130I	CCWGG	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	3 cut(s)	106, 168, 230
BlsI	GCNGC	3 cut(s)	107, 169, 231
Bme1390I	CCNGG	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	272
BmiI	GGNNCC	2 cut(s)	10, 16
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	17
BmuI	ACTGGG	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	11
Bse118I	RCCGGY	2 cut(s)	17, 116
Bse1I	ACTGG	1 cut(s)	162
BseAI	TCCGGA	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	3 cut(s)	32, 35, 239
BseXI	GCAGC	2 cut(s)	117, 241
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	12, 18, 117
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp13I	TCCGGA	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	2 cut(s)	167, 170
BspEI	TCCGGA	1 cut(s)	11
BspLI	GGNNCC	2 cut(s)	10, 16
BspPI	GGATC	2 cut(s)	3, 16
BspQI	GCTCTTC	1 cut(s)	130
BsrFI	RCCGGY	2 cut(s)	17, 116
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	2 cut(s)	17, 116
BssMI	GATC	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	238
Bst6I	CTCTTC	2 cut(s)	130, 212
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	32, 234
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 238
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	117, 241
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
Cac8I	GCNNGC	2 cut(s)	32, 234
CfoI	GCGC	1 cut(s)	136
Cfr10I	RCCGGY	2 cut(s)	17, 116
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviJI	RGCY	4 cut(s)	116, 123, 241, 271
CviKI_1	RGCY	4 cut(s)	116, 123, 241, 271
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
Eam1104I	CTCTTC	2 cut(s)	130, 212
EarI	CTCTTC	2 cut(s)	130, 212
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	273
Eco47III	AGCGCT	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	273
FaiI	YATR	1 cut(s)	205
Fnu4HI	GCNGC	3 cut(s)	106, 168, 230
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	3 cut(s)	106, 168, 230
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	3 cut(s)	106, 168, 230
HaeII	RGCGCY	1 cut(s)	137
HapII	CCGG	3 cut(s)	12, 18, 117
HhaI	GCGC	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	3 cut(s)	12, 18, 117
Hpy188III	TCNNGA	2 cut(s)	12, 199
Hpy99I	CGWCG	4 cut(s)	67, 98, 101, 266
HpyAV	CCTTC	2 cut(s)	59, 133
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 238
HspAI	GCGC	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	8
LguI	GCTCTTC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	25, 31, 130, 143, 184, 223, 250
Lsp1109I	GCAGC	2 cut(s)	117, 241
LweI	GCATC	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	4 cut(s)	117, 226, 229, 269
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	2 cut(s)	35, 288
MnlI	CCTC	6 cut(s)	50, 53, 56, 204, 217, 268
MroI	TCCGGA	1 cut(s)	11
MspI	CCGG	3 cut(s)	12, 18, 117
MspR9I	CCNGG	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	2 cut(s)	27, 238
NdeII	GATC	1 cut(s)	8
NlaIV	GGNNCC	2 cut(s)	10, 16
PaeR7I	CTCGAG	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	107, 169, 231
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	10, 16
PspXI	VCTCGAGB	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	8
SacI	GAGCTC	1 cut(s)	273
SapI	GCTCTTC	1 cut(s)	130
SatI	GCNGC	3 cut(s)	106, 168, 230
Sau3AI	GATC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	3 cut(s)	144, 273, 279
SfaNI	GCATC	1 cut(s)	17
Sfr274I	CTCGAG	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	245, 272
SmoI	CTYRAG	2 cut(s)	245, 272
Sse9I	AATT	2 cut(s)	35, 288
SsiI	CCGC	2 cut(s)	167, 170
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	236
TaqI	TCGA	2 cut(s)	273, 279
TasI	AATT	2 cut(s)	35, 288
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	74
TseI	GCWGC	2 cut(s)	105, 229
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	114
XhoI	CTCGAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.