Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001184

Physical Location & Seq

Genomic Coordinates Reverse (-)

52740187 .. 52742942

Gene Structure 2756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20537

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAATGGATCCGGAACCGGCAACCGATGCGTGCAATTCCTCCTCCTCCTCCTCCTTCTCACAATCCCGTTGCTGTTTGATTCAGTTCGGGCAAAGGACGACGACGGAAGCAACAAAGCCGGTGGCTCTTCGGTAGCGCTGAAGGTAGTTATTGTGTTGCTGGGCGTGGCGGCGGTGGCTGGGTTCGGTGTGTTTCTGTTCAGGATATGGCAGAGGAAGAAGAGAGAGGAGCAGCACGCCAGGCTTCTCAAGTTGTTTGAAGACGACGATGAGCTCGAGGTCGAACTTGGAATTAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

11.03

Weight (kDa)

5.79

Isoelectric Point (pI)

18.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09645 AT1G57765 AT1G57765
fragaria_vesca	FvH4_5g28260 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580
malus_domestica	MD05G1210300.v1.1 MD08G1216400.v1.1 MD08G1244000.v1.1 MD15G1403500.v1.1 MD15G1438300.v1.1
prunus_persica	Prupe.1G549500_v2.0.a1 Prupe.1G549500_v2.0.a1 Prupe.1G581300_v2.0.a1 Prupe.1G581300_v2.0.a1 Prupe.1G581300_v2.0.a1 Prupe.1G581300_v2.0.a1 Prupe.1G581300_v2.0.a1
pyrus_communis	pycom08g21170 pycom15g36080 pycom15g38630
rosa_chinensis	RchiOBHm_Chr3g0495521 RchiOBHm_Chr5g0063911 RchiOBHm_Chr7g0220501 RchiOBHm_Chr7g0229261 RchiOBHm_Chr7g0230041
rosa_laevigata	RLG00000001519 RLG00000007722
rosa_multiflora	Rmu_sc0000693.1_g000033 Rmu_sc0012148.1_g000003 Rmu_sc0015248.1_g000005 Rmu_ssc0000189.1_g000047
rosa_roxburghii	Rroxscaffold_3G00230430 Rroxscaffold_3G00239350
rosa_rugosa	Rorug07G0194100 Rorug07G0258100
rosa_samantha	Rh3AG321600 Rh5BG262600 Rh5DG271600 Rh7AG335100 Rh7BG326200 Rh7CG352800 Rh7CG427100 Rh7DG331800 Rh7DG403000
rosa_wichuraiana	Rw7G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	11
AciI	CCGC	2 cut(s)	170, 173
AclWI	GGATC	2 cut(s)	3, 16
AcuI	CTGAAG	1 cut(s)	161
AfeI	AGCGCT	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	239
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	3, 16
Ama87I	CYCGRG	1 cut(s)	275
Aor13HI	TCCGGA	1 cut(s)	11
Aor51HI	AGCGCT	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	241
BfoI	RGCGCY	1 cut(s)	140
BisI	GCNGC	2 cut(s)	171, 233
BlsI	GCNGC	2 cut(s)	172, 234
Bme1390I	CCNGG	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	275
BmiI	GGNNCC	2 cut(s)	10, 16
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	11
Bse118I	RCCGGY	2 cut(s)	17, 119
BseAI	TCCGGA	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	241
BseRI	GAGGAG	5 cut(s)	32, 35, 38, 41, 242
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	2 cut(s)	160, 179
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	3 cut(s)	12, 18, 120
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp13I	TCCGGA	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	2 cut(s)	170, 173
BspEI	TCCGGA	1 cut(s)	11
BspLI	GGNNCC	2 cut(s)	10, 16
BspPI	GGATC	2 cut(s)	3, 16
BspQI	GCTCTTC	1 cut(s)	133
BsrFI	RCCGGY	2 cut(s)	17, 119
BssAI	RCCGGY	2 cut(s)	17, 119
BssMI	GATC	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	241
Bst6I	CTCTTC	2 cut(s)	133, 215
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	32, 237
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 176, 241
BstNI	CCWGG	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
Cac8I	GCNNGC	2 cut(s)	32, 237
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	2 cut(s)	17, 119
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CviJI	RGCY	5 cut(s)	119, 126, 179, 244, 274
CviKI_1	RGCY	5 cut(s)	119, 126, 179, 244, 274
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
Eam1104I	CTCTTC	2 cut(s)	133, 215
EarI	CTCTTC	2 cut(s)	133, 215
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco47III	AGCGCT	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	276
FaiI	YATR	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	171, 233
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	171, 233
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	2 cut(s)	171, 233
GsaI	CCCAGC	2 cut(s)	164, 183
HaeII	RGCGCY	1 cut(s)	140
HapII	CCGG	3 cut(s)	12, 18, 120
HhaI	GCGC	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	3 cut(s)	12, 18, 120
Hpy188III	TCNNGA	2 cut(s)	12, 202
Hpy99I	CGWCG	3 cut(s)	104, 107, 269
HpyAV	CCTTC	2 cut(s)	65, 136
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 176, 241
HspAI	GCGC	1 cut(s)	137
Kpn2I	TCCGGA	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	8
LguI	GCTCTTC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	8 cut(s)	25, 31, 133, 146, 165, 187, 226, 253
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	17
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	4 cut(s)	120, 229, 232, 272
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	2 cut(s)	35, 291
MnlI	CCTC	8 cut(s)	50, 53, 56, 59, 62, 207, 220, 271
MroI	TCCGGA	1 cut(s)	11
MspI	CCGG	3 cut(s)	12, 18, 120
MspR9I	CCNGG	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	3 cut(s)	27, 176, 241
NdeII	GATC	1 cut(s)	8
NlaIV	GGNNCC	2 cut(s)	10, 16
PaeR7I	CTCGAG	1 cut(s)	275
PciSI	GCTCTTC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	172, 234
Psp124BI	GAGCTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	239
PspFI	CCCAGC	2 cut(s)	160, 179
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	10, 16
PspXI	VCTCGAGB	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	8
SacI	GAGCTC	1 cut(s)	276
SapI	GCTCTTC	1 cut(s)	133
SatI	GCNGC	2 cut(s)	171, 233
Sau3AI	GATC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	3 cut(s)	147, 276, 282
SfaNI	GCATC	1 cut(s)	17
Sfr274I	CTCGAG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	248, 275
SmoI	CTYRAG	2 cut(s)	248, 275
Sse9I	AATT	2 cut(s)	35, 291
SsiI	CCGC	2 cut(s)	170, 173
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	239
TaqI	TCGA	2 cut(s)	276, 282
TasI	AATT	2 cut(s)	35, 291
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	120
XhoI	CTCGAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.