FvH4_5g32580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001184
Physical Location & Seq
Reverse (-)
23523153 .. 23527508
4356 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32580.t10

Sequence Viewer

Length: 276 bp
ATGAACGGATCCCGATCCCTGCAGTTCCTCCTGTTCCTCACGATCCCCTTGTTTTTCGCTTCCGTTTCGGCCAAAGACGGCAGCAACAAAGCCGGTGGCTCATCGGTGGCCCTGAAGGTGTTGATTGTGGTGCTGGGCGTGGCGGCGGTGGCTGGTTTCGGTGTGTTTCTGTTCAGGATATGGCAGAGGAAGAAGAGAGAGGAGCAGCACGCCAGGCTTCTCAAGCTCTTTGAAGACGACGATGAGCTCGAGGTTGAGCTTGGGATTAGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.08

Weight (kDa)

8.12

Isoelectric Point (pI)

29.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 143, 146
AclWI GGATC 4 cut(s) 3, 9, 16, 37
AcoI YGGCCR 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 233
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 3 cut(s) 226, 247, 259
AluI AGCT 3 cut(s) 226, 247, 259
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 4 cut(s) 3, 9, 16, 37
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 2 cut(s) 69, 108
ApeKI GCWGC 2 cut(s) 81, 205
AspS9I GGNCC 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 248
BamHI GGATCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 93, 217
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 214
BfmI CTRYAG 1 cut(s) 20
BisI GCNGC 3 cut(s) 82, 144, 206
BlsI GCNGC 3 cut(s) 83, 145, 207
Bme1390I CCNGG 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 13
Bse118I RCCGGY 1 cut(s) 92
Bse8I GATNNNNATC 1 cut(s) 13
BseBI CCWGG 1 cut(s) 214
BseJI GATNNNNATC 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 93, 217
BseYI CCCAGC 1 cut(s) 133
BshFI GGCC 2 cut(s) 71, 110
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 2 cut(s) 71, 110
BsoBI CYCGRG 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 3 cut(s) 8, 14, 42
BspACI CCGC 2 cut(s) 143, 146
BspANI GGCC 2 cut(s) 71, 110
BspLI GGNNCC 1 cut(s) 10
BspMAI CTGCAG 1 cut(s) 24
BspPI GGATC 4 cut(s) 3, 9, 16, 37
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssMI GATC 3 cut(s) 8, 14, 42
Bst2UI CCWGG 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 210
BstKTI GATC 3 cut(s) 11, 17, 45
BstMBI GATC 3 cut(s) 8, 14, 42
BstMWI GCNNNNNNNGC 3 cut(s) 149, 214, 223
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 93, 217
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuRI GGCC 2 cut(s) 71, 110
Cac8I GCNNGC 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 109
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviJI RGCY 9 cut(s) 71, 92, 99, 110, 152, 217, 226, 247, 259
CviKI_1 RGCY 9 cut(s) 71, 92, 99, 110, 152, 217, 226, 247, 259
DpnI GATC 3 cut(s) 10, 16, 44
DpnII GATC 3 cut(s) 8, 14, 42
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 249
FaiI YATR 1 cut(s) 181
Fnu4HI GCNGC 3 cut(s) 82, 144, 206
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 3 cut(s) 82, 144, 206
GluI GCNGC 3 cut(s) 82, 144, 206
GsaI CCCAGC 1 cut(s) 137
HaeIII GGCC 2 cut(s) 71, 110
HapII CCGG 1 cut(s) 93
HpaII CCGG 1 cut(s) 93
Hpy188III TCNNGA 3 cut(s) 12, 40, 175
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 214, 223
Kzo9I GATC 3 cut(s) 8, 14, 42
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 9 cut(s) 32, 44, 106, 119, 125, 138, 160, 199, 226
Lsp1109I GCAGC 2 cut(s) 93, 217
MalI GATC 3 cut(s) 10, 16, 44
MboI GATC 3 cut(s) 8, 14, 42
MboII GAAGA 3 cut(s) 202, 205, 245
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 249
MnlI CCTC 5 cut(s) 38, 47, 180, 193, 244
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 214
MvaI CCWGG 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 149, 214, 223
NdeII GATC 3 cut(s) 8, 14, 42
NlaIV GGNNCC 1 cut(s) 10
PaeR7I CTCGAG 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PkrI GCNGC 3 cut(s) 83, 145, 207
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 109
PspXI VCTCGAGB 1 cut(s) 248
PstI CTGCAG 1 cut(s) 24
PsuI RGATCY 1 cut(s) 8
SacI GAGCTC 1 cut(s) 249
SatI GCNGC 3 cut(s) 82, 144, 206
Sau3AI GATC 3 cut(s) 8, 14, 42
Sau96I GGNCC 1 cut(s) 109
ScrFI CCNGG 1 cut(s) 214
SduI GDGCHC 1 cut(s) 249
SetI ASST 5 cut(s) 120, 228, 249, 255, 261
SfcI CTRYAG 1 cut(s) 20
Sfr274I CTCGAG 1 cut(s) 248
SlaI CTCGAG 1 cut(s) 248
SmlI CTYRAG 2 cut(s) 221, 248
SmoI CTYRAG 2 cut(s) 221, 248
SsiI CCGC 2 cut(s) 143, 146
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 212
TaqI TCGA 1 cut(s) 249
TauI GCSGC 1 cut(s) 146
TseI GCWGC 2 cut(s) 81, 205
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 21, 52
XhoI CTCGAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.