MD15G1403500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0001184
Physical Location & Seq
Forward (+)
50427837 .. 50428163
327 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1403500.v1.1.491

Sequence Viewer

Length: 327 bp
ATGAATGGATATCGGAGCCGCCATTGCCAAGGCTGTCTGCAACTGCAAATCCCCTTTCTCCTCATCTTGTCCATTAGCCTCCTCTTCGGTTCAGCTTCGGCAGACGACCCCTCAACTCCCACTCCCAAAAACGAAGACAAACCTTCAAGTGGGTCGGTGGCGCTCAAGGCAGTGATTGTGCTGCTGGGGGTTGCGTCCATCGTCGGCTTCTGCGTCTTCTTGTTCAGGATATGGCAGAAGAAGAAGAGAGAAGAGCAACACGCCCGTCTTCTCAAGCTCTTTCAAGACGACGATGAACTCGAGGTTGAGCTTGGCATTAGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.06

Weight (kDa)

6.72

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 147, 284
AluBI AGCT 3 cut(s) 95, 277, 310
AluI AGCT 3 cut(s) 95, 277, 310
Ama87I CYCGRG 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 181
AspLEI GCGC 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 299
BbsI GAAGAC 3 cut(s) 141, 208, 260
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 164
BisI GCNGC 2 cut(s) 19, 182
BlsI GCNGC 2 cut(s) 20, 183
BmeT110I CYCGRG 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 17
BpiI GAAGAC 3 cut(s) 141, 208, 260
BpuEI CTTGAG 2 cut(s) 149, 257
BsaJI CCNNGG 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 22
BseRI GAGGAG 2 cut(s) 50, 71
BseXI GCAGC 1 cut(s) 168
BseYI CCCAGC 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 299
BspACI CCGC 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 17
BspQI GCTCTTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 28
Bst6I CTCTTC 3 cut(s) 89, 239, 246
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 24, 167
BstV1I GCAGC 1 cut(s) 168
BstV2I GAAGAC 3 cut(s) 141, 208, 260
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
CfoI GCGC 1 cut(s) 163
CseI GACGC 2 cut(s) 183, 202
CviJI RGCY 7 cut(s) 18, 33, 78, 95, 207, 277, 310
CviKI_1 RGCY 7 cut(s) 18, 33, 78, 95, 207, 277, 310
Eam1104I CTCTTC 3 cut(s) 89, 239, 246
EarI CTCTTC 3 cut(s) 89, 239, 246
Eco130I CCWWGG 1 cut(s) 28
Eco32I GATATC 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 299
EcoRV GATATC 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaiI YATR 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 19, 182
Fsp4HI GCNGC 2 cut(s) 19, 182
GlaI GCGC 1 cut(s) 162
GluI GCNGC 2 cut(s) 19, 182
GsaI CCCAGC 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 164
HgaI GACGC 2 cut(s) 183, 202
HhaI GCGC 1 cut(s) 163
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 226, 284
Hpy99I CGWCG 2 cut(s) 206, 293
HpyAV CCTTC 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 40, 46
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 167
HspAI GCGC 1 cut(s) 161
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 2 cut(s) 170, 211
Lsp1109I GCAGC 1 cut(s) 168
MboII GAAGA 8 cut(s) 76, 146, 208, 250, 253, 256, 260, 263
MnlI CCTC 5 cut(s) 71, 89, 92, 121, 295
MwoI GCNNNNNNNGC 2 cut(s) 24, 167
NlaIV GGNNCC 1 cut(s) 17
PaeR7I CTCGAG 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 297
PkrI GCNGC 2 cut(s) 20, 183
PspFI CCCAGC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 17
PspXI VCTCGAGB 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 246
SatI GCNGC 2 cut(s) 19, 182
SetI ASST 5 cut(s) 97, 145, 279, 306, 312
Sfr274I CTCGAG 1 cut(s) 299
SlaI CTCGAG 1 cut(s) 299
SmlI CTYRAG 3 cut(s) 164, 272, 299
SmoI CTYRAG 3 cut(s) 164, 272, 299
SsiI CCGC 1 cut(s) 19
StyI CCWWGG 1 cut(s) 28
TaqI TCGA 1 cut(s) 300
TauI GCSGC 1 cut(s) 21
TscAI CASTG 1 cut(s) 177
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 17, 309
TspRI CASTG 1 cut(s) 177
XhoI CTCGAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.