Prupe.1G549500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001184
Physical Location & Seq
Forward (+)
44916215 .. 44919884
3670 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G549500.1

Sequence Viewer

Length: 318 bp
ATGAATGGATTTCAAAGCCGCCAAAGATCTCTCCAGTTCCAATTTCTCCTCTTCTCCATTGCCACCCTCTTCGATTCAGGTTTAGCAAACGACCCACCAAGTCCCAAGAATGGAAACAAAGCTTCTTCTTCTTCTTCAAGTGGGTCTGTGGCGCTGAAGGCAGTCATTGTGTTGCTGGGTGTGGCGGCTGTCTTGGGCTTCTGTGTGTTCTTGTTCAAGATATGGCAGAAGAAGAAGAGAGAAGAGCAACACGCCCGTCTTCTTAAGCTGTTTGAAGATGATGATGAGCTGGAGGTTGAACTTGGCATTAGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.65

Weight (kDa)

7.88

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 19, 185
AcuI CTGAAG 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 110
AflII CTTAAG 1 cut(s) 263
AgsI TTSAA 5 cut(s) 14, 138, 217, 275, 299
AluBI AGCT 3 cut(s) 122, 268, 289
AluI AGCT 3 cut(s) 122, 268, 289
AspLEI GCGC 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 155
BfrI CTTAAG 1 cut(s) 263
BglII AGATCT 1 cut(s) 26
BisI GCNGC 2 cut(s) 19, 186
BlsI GCNGC 2 cut(s) 20, 187
BpiI GAAGAC 1 cut(s) 251
BpmI CTGGAG 2 cut(s) 17, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 175
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 26
BspACI CCGC 2 cut(s) 19, 185
BspQI GCTCTTC 1 cut(s) 237
BspTI CTTAAG 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 57
BsrI ACTGG 1 cut(s) 34
BssMI GATC 1 cut(s) 26
Bst6I CTCTTC 4 cut(s) 56, 74, 230, 237
BstAFI CTTAAG 1 cut(s) 263
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 1 cut(s) 29
BstMBI GATC 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
CfoI GCGC 1 cut(s) 154
CviJI RGCY 6 cut(s) 18, 122, 188, 198, 268, 289
CviKI_1 RGCY 6 cut(s) 18, 122, 188, 198, 268, 289
DpnI GATC 1 cut(s) 28
DpnII GATC 1 cut(s) 26
Eam1104I CTCTTC 4 cut(s) 56, 74, 230, 237
EarI CTCTTC 4 cut(s) 56, 74, 230, 237
Eco57I CTGAAG 1 cut(s) 176
FaiI YATR 1 cut(s) 223
FaqI GGGAC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 19, 186
Fsp4HI GCNGC 2 cut(s) 19, 186
GlaI GCGC 1 cut(s) 153
GluI GCNGC 2 cut(s) 19, 186
GsaI CCCAGC 1 cut(s) 179
GsuI CTGGAG 2 cut(s) 17, 311
HaeII RGCGCY 1 cut(s) 155
HhaI GCGC 1 cut(s) 154
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 1 cut(s) 74
Hpy188III TCNNGA 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 26
LguI GCTCTTC 1 cut(s) 237
LpnPI CCDG 4 cut(s) 47, 63, 161, 275
MalI GATC 1 cut(s) 28
MboI GATC 1 cut(s) 26
MflI RGATCY 1 cut(s) 26
MluCI AATT 1 cut(s) 41
MnlI CCTC 3 cut(s) 59, 77, 286
MseI TTAA 1 cut(s) 264
MspCI CTTAAG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 20, 187
PspFI CCCAGC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 2 cut(s) 19, 186
Sau3AI GATC 1 cut(s) 26
SetI ASST 5 cut(s) 82, 124, 270, 291, 297
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 41
SsiI CCGC 2 cut(s) 19, 185
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 41
TauI GCSGC 2 cut(s) 21, 188
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.