Rh3AG321600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001184
Physical Location & Seq
Reverse (-)
44762444 .. 44762710
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG321600.1

Sequence Viewer

Length: 267 bp
ATGCGTGCAAGTCCTCCTCCTCCTTCTCACAATCCATTGCTGTTTGATTCAGTTCAGGCAAAGGACGACGGAAGCAACGAAGCCGGTGGTTCTTCAATAGCGCTGAAGGTAGTTATTGTGTTGCTGGACATGGCGGTGGTGGTTGGGTTCGGTGTGTTTCTGTTCAGGATATGGCAGAGGAAGAAGAGAGAGGAGCAGCACGCCAGGCTTCTCAAGTTGTTTGAAGACGACGATGAGCTCGAGGTTGAACTTGGAATTAGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.86

Weight (kDa)

5.08

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 125
AfeI AGCGCT 1 cut(s) 102
AgsI TTSAA 3 cut(s) 96, 224, 248
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw21I GWGCWC 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 239
Aor51HI AGCGCT 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 239
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 208
BciT130I CCWGG 1 cut(s) 205
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 35
BseBI CCWGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 35
BseRI GAGGAG 3 cut(s) 6, 9, 206
BseXI GCAGC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 1 cut(s) 84
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 240
BspACI CCGC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 6, 201
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 6, 201
CfoI GCGC 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 83
CviAII CATG 1 cut(s) 130
CviJI RGCY 3 cut(s) 83, 208, 238
CviKI_1 RGCY 3 cut(s) 83, 208, 238
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco47III AGCGCT 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 1 cut(s) 133
FaiI YATR 2 cut(s) 131, 172
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 197
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 104
HapII CCGG 1 cut(s) 84
HhaI GCGC 1 cut(s) 103
Hin1II CATG 1 cut(s) 133
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 166
Hpy99I CGWCG 2 cut(s) 71, 233
HpyAV CCTTC 2 cut(s) 33, 100
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
Hsp92II CATG 1 cut(s) 133
HspAI GCGC 1 cut(s) 101
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 6 cut(s) 41, 97, 110, 151, 190, 217
Lsp1109I GCAGC 1 cut(s) 208
MboII GAAGA 4 cut(s) 84, 193, 196, 236
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 255
MnlI CCTC 6 cut(s) 24, 27, 30, 171, 184, 235
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 205
NlaIII CATG 1 cut(s) 133
PaeR7I CTCGAG 1 cut(s) 239
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 237
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspXI VCTCGAGB 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 134
SacI GAGCTC 1 cut(s) 240
SatI GCNGC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 240
SetI ASST 3 cut(s) 111, 240, 246
Sfr274I CTCGAG 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 212, 239
SmoI CTYRAG 2 cut(s) 212, 239
Sse9I AATT 1 cut(s) 255
SsiI CCGC 1 cut(s) 134
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 203
TaqI TCGA 1 cut(s) 240
TasI AATT 1 cut(s) 255
TfiI GAWTC 1 cut(s) 47
TseI GCWGC 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 84
XhoI CTCGAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.