FvH4_5g28260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001184
Physical Location & Seq
Forward (+)
19432785 .. 19433367
583 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28260.t1

Sequence Viewer

Length: 246 bp
ATGAGATGCAGAGCAACGAGAGAAAGAAAGAGGTCAAGGTTTTCGGATGGTGATTCATCGACCTCCAAAACCACAAGTGGGTCTACATTGGCCCTCATACCTTCTGGACTTGTAGTAGTTGGATTGTTTTGCTTTTTCCTCTTTAAGATATGGCAGAAGAGGAAACGAGAAGAGCAGTATGCTCGTCTTTTGAAGTTGTTTGAACAAGATGATGAGCTTGAACTTGAGCTTGGTCTCCGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.48

Weight (kDa)

9.69

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 83
AciI CCGC 1 cut(s) 238
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 3 cut(s) 193, 203, 221
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AluBI AGCT 2 cut(s) 217, 229
AluI AGCT 2 cut(s) 217, 229
Alw26I GTCTC 1 cut(s) 239
AoxI GGCC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 62
BccI CCATC 1 cut(s) 41
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BcoDI GTCTC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 78
BshFI GGCC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 239
BsnI GGCC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 239
BspACI CCGC 1 cut(s) 238
BspANI GGCC 1 cut(s) 92
BspQI GCTCTTC 1 cut(s) 165
BspTNI GGTCTC 1 cut(s) 239
Bst6I CTCTTC 2 cut(s) 152, 165
BstF5I GGATG 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 239
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 91
CviJI RGCY 3 cut(s) 92, 217, 229
CviKI_1 RGCY 3 cut(s) 92, 217, 229
Eam1104I CTCTTC 2 cut(s) 152, 165
EarI CTCTTC 2 cut(s) 152, 165
EciI GGCGGA 1 cut(s) 227
Eco31I GGTCTC 1 cut(s) 239
FaiI YATR 3 cut(s) 98, 151, 180
FblI GTMKAC 1 cut(s) 83
FokI GGATG 1 cut(s) 59
HaeIII GGCC 1 cut(s) 92
HinfI GANTC 1 cut(s) 53
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 105
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 9
LguI GCTCTTC 1 cut(s) 165
LpnPI CCDG 1 cut(s) 90
MboII GAAGA 2 cut(s) 169, 182
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 5 cut(s) 24, 73, 104, 149, 153
MseI TTAA 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 144
Sau96I GGNCC 1 cut(s) 91
SetI ASST 6 cut(s) 35, 41, 65, 103, 219, 231
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SsiI CCGC 1 cut(s) 238
TaqI TCGA 1 cut(s) 59
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TspDTI ATGAA 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.