AT1G57765

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001184
Physical Location & Seq
Forward (+)
21393084 .. 21394982
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G57765.1

Sequence Viewer

Length: 324 bp
ATGAGAGAGATCTCGATCTCGACGATTACTCTTTCATGGTCGCATCTTCTACTCTGCGCTTCGATTTGTCTCCACTTCTTCTTAGGTATATCTGGTGATCCCAATAGTTCAAGTACTGGAGCAAAGGCTGAATCTCATACTTCTTCCAGCAAAACAGGCACGAAAGTGATCTTTATACTGCTCGGGTTTGGTGCTGTAGCGGGACTTTCGTTCTTCTTGTACAAACTGTGGCAAAAGAAGAAAAGAGATGAGCAGTATGCTCGGCTATTGAAACTGTTTGAGGAAGATGATGAACTCGAGGTTGAATTAGGCCTACGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.94

Weight (kDa)

6.28

Isoelectric Point (pI)

29.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 200
AclWI GGATC 1 cut(s) 92
AfaI GTAC 2 cut(s) 115, 221
AgsI TTSAA 3 cut(s) 111, 271, 305
AleI CACNNNNGTG 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 1 cut(s) 92
Ama87I CYCGRG 2 cut(s) 182, 296
AoxI GGCC 1 cut(s) 310
AspLEI GCGC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 107
AvaI CYCGRG 2 cut(s) 182, 296
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BcoDI GTCTC 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 195
BglII AGATCT 1 cut(s) 9
BmcAI AGTACT 1 cut(s) 115
BmeT110I CYCGRG 2 cut(s) 182, 296
BmsI GCATC 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 14
BseJI GATNNNNATC 1 cut(s) 14
BseNI ACTGG 1 cut(s) 121
BshFI GGCC 1 cut(s) 312
BsiHKCI CYCGRG 2 cut(s) 182, 296
BslFI GGGAC 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 1 cut(s) 312
BsoBI CYCGRG 2 cut(s) 182, 296
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 4 cut(s) 9, 15, 97, 168
BspACI CCGC 1 cut(s) 200
BspANI GGCC 1 cut(s) 312
BspPI GGATC 1 cut(s) 92
BsrGI TGTACA 1 cut(s) 219
BsrI ACTGG 1 cut(s) 121
BssMI GATC 4 cut(s) 9, 15, 97, 168
Bst4CI ACNGT 2 cut(s) 228, 276
BstAUI TGTACA 1 cut(s) 219
BstBAI YACGTR 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 4 cut(s) 12, 18, 100, 171
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 4 cut(s) 9, 15, 97, 168
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 1 cut(s) 312
CfoI GCGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 114, 220
CviAII CATG 1 cut(s) 36
CviJI RGCY 3 cut(s) 128, 265, 312
CviKI_1 RGCY 3 cut(s) 128, 265, 312
CviQI GTAC 2 cut(s) 114, 220
DdeI CTNAG 1 cut(s) 82
DpnI GATC 4 cut(s) 11, 17, 99, 170
DpnII GATC 4 cut(s) 9, 15, 97, 168
Eco147I AGGCCT 1 cut(s) 312
Eco88I CYCGRG 2 cut(s) 182, 296
FaeI CATG 1 cut(s) 39
FaiI YATR 5 cut(s) 37, 89, 138, 176, 258
FaqI GGGAC 1 cut(s) 216
FatI CATG 1 cut(s) 35
FauI CCCGC 1 cut(s) 193
GlaI GCGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 312
HhaI GCGC 1 cut(s) 59
Hin1II CATG 1 cut(s) 39
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 1 cut(s) 131
HphI GGTGA 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 13, 19
Hpy99I CGWCG 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 228, 276
HpyCH4IV ACGT 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 1 cut(s) 82
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 1 cut(s) 39
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 4 cut(s) 9, 15, 97, 168
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 4 cut(s) 78, 102, 141, 160
LweI GCATC 1 cut(s) 52
MaeII ACGT 1 cut(s) 316
MalI GATC 4 cut(s) 11, 17, 99, 170
MboI GATC 4 cut(s) 9, 15, 97, 168
MboII GAAGA 6 cut(s) 38, 70, 135, 205, 250, 296
MflI RGATCY 1 cut(s) 9
MluCI AATT 1 cut(s) 305
MnlI CCTC 2 cut(s) 274, 292
MseI TTAA 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 156
NdeII GATC 4 cut(s) 9, 15, 97, 168
NlaIII CATG 1 cut(s) 39
NmeAIII GCCGAG 1 cut(s) 241
OliI CACNNNNGTG 1 cut(s) 164
PaeR7I CTCGAG 1 cut(s) 296
PceI AGGCCT 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PfeI GAWTC 1 cut(s) 131
Ppu21I YACGTR 1 cut(s) 317
PspXI VCTCGAGB 1 cut(s) 296
PsuI RGATCY 1 cut(s) 9
RsaI GTAC 2 cut(s) 115, 221
RsaNI GTAC 2 cut(s) 114, 220
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 322
Sau3AI GATC 4 cut(s) 9, 15, 97, 168
ScaI AGTACT 1 cut(s) 115
SetI ASST 3 cut(s) 88, 303, 319
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 1 cut(s) 195
Sfr274I CTCGAG 1 cut(s) 296
SlaI CTCGAG 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 1 cut(s) 305
SseBI AGGCCT 1 cut(s) 312
SsiI CCGC 1 cut(s) 200
StuI AGGCCT 1 cut(s) 312
TaaI ACNGT 2 cut(s) 228, 276
TaiI ACGT 1 cut(s) 319
TaqI TCGA 4 cut(s) 14, 20, 62, 297
TasI AATT 1 cut(s) 305
TatI WGTACW 2 cut(s) 113, 219
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 24, 306
XhoI CTCGAG 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.