Rmu_sc0012148.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012148.1
OG0001184
Physical Location & Seq
Reverse (-)
24037 .. 24339
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012148.1_g000003.1.cds

Sequence Viewer

Length: 303 bp
atgaatggatcgggaatcggcaaccgatgcgtgcaattcctcctcctcctcctcctccttttcacaatcccgttgttgtttgattcagttcgggcaaaggaccacggaagcaacaaagtcgctggttcttcggtagcgctgaaggtagttatcgtgttgctgggcgtggcagtggtggttgggttcggtgtgtttctgttcaggatatggcagaggaagaagagagaggagcagcacgtcaggcttctcaagttgtttgaagacgatgatgagctcaaggttgaacttggaattagggattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.22

Weight (kDa)

9.36

Isoelectric Point (pI)

13.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 161
AfeI AGCGCT 1 cut(s) 138
AgsI TTSAA 2 cut(s) 260, 284
AjiI CACGTC 1 cut(s) 238
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw21I GWGCWC 1 cut(s) 276
AlwI GGATC 1 cut(s) 16
Aor51HI AGCGCT 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 232
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 100
AvaII GGWCC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 244
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BfoI RGCGCY 1 cut(s) 140
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 100
BmsI GCATC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 267
BpuEI CTTGAG 2 cut(s) 233, 260
BsaJI CCNNGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 103
BseRI GAGGAG 6 cut(s) 32, 35, 38, 41, 44, 242
BseXI GCAGC 1 cut(s) 244
BseYI CCCAGC 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 8
BspPI GGATC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 103
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 2 cut(s) 27, 241
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 103
BtrI CACGTC 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 32
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 100
CviJI RGCY 2 cut(s) 244, 274
CviKI_1 RGCY 2 cut(s) 244, 274
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 100
Eco47III AGCGCT 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 276
FaiI YATR 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 233
GlaI GCGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 233
GsaI CCCAGC 1 cut(s) 164
HaeII RGCGCY 1 cut(s) 140
HhaI GCGC 1 cut(s) 139
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 2 cut(s) 15, 83
Hpy188III TCNNGA 2 cut(s) 12, 202
HpyAV CCTTC 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 241
HpySE526I ACGT 1 cut(s) 237
HspAI GCGC 1 cut(s) 137
Kzo9I GATC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 4 cut(s) 108, 146, 187, 226
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 17
MaeII ACGT 1 cut(s) 237
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 4 cut(s) 120, 229, 232, 272
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 35, 291
MnlI CCTC 8 cut(s) 50, 53, 56, 59, 62, 65, 207, 220
MseI TTAA 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 27, 241
NdeII GATC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 15, 83
PkrI GCNGC 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 100
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 301
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 1 cut(s) 8
Sau96I GGNCC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 276
SetI ASST 4 cut(s) 147, 240, 276, 282
SfaNI GCATC 1 cut(s) 17
SinI GGWCC 1 cut(s) 100
SmlI CTYRAG 2 cut(s) 248, 275
SmoI CTYRAG 2 cut(s) 248, 275
Sse9I AATT 2 cut(s) 35, 291
SstI GAGCTC 1 cut(s) 276
TaiI ACGT 1 cut(s) 240
TasI AATT 2 cut(s) 35, 291
TfiI GAWTC 2 cut(s) 15, 83
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TscAI CASTG 1 cut(s) 177
TseI GCWGC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.