RchiOBHm_Chr7g0230041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001184
Physical Location & Seq
Reverse (-)
53519660 .. 53519954
295 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20611

Sequence Viewer

Length: 243 bp
ATGGATCCGGAATCTGCAAACAATGTGTGCAATTCCTCCTCCTCCCCCCTCTCAGTCCCGTTGTTGTTTGATTCAATTTCAGCAAAGGAGGATGAAAACAAAGCTGGTGGCTCTTCGGTAGCGCTGAAGGTAGTTATTGAGTTGCTGAGGGTCGTGGCGGCGGCAAGGTTCGGTGTGTTTATGTTCAGGATATGGCAGAAGAAGAAGAGAGAGGAGCAGCACGCCAGGCTTAAATCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.82

Weight (kDa)

9.36

Isoelectric Point (pI)

63.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 7
AciI CCGC 2 cut(s) 158, 161
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 146
AfeI AGCGCT 1 cut(s) 123
AgsI TTSAA 1 cut(s) 75
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AlwI GGATC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 7
Aor51HI AGCGCT 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 217
AspLEI GCGC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 228
BamHI GGATCC 1 cut(s) 4
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 226
BfoI RGCGCY 1 cut(s) 125
BisI GCNGC 3 cut(s) 159, 162, 218
BlsI GCNGC 3 cut(s) 160, 163, 219
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 226
Bpu10I CCTNAGC 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 7
BseAI TCCGGA 1 cut(s) 7
BseBI CCWGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 66, 137
BseRI GAGGAG 3 cut(s) 28, 31, 227
BseXI GCAGC 1 cut(s) 229
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 41
Bsp13I TCCGGA 1 cut(s) 7
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 2 cut(s) 158, 161
BspCNI CTCAG 2 cut(s) 65, 138
BspEI TCCGGA 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 118
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 118, 200
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 52, 146
BstF5I GGATG 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 222
CfoI GCGC 1 cut(s) 124
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviJI RGCY 3 cut(s) 104, 111, 229
CviKI_1 RGCY 3 cut(s) 104, 111, 229
DdeI CTNAG 2 cut(s) 52, 146
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 2 cut(s) 118, 200
EarI CTCTTC 2 cut(s) 118, 200
Eco47III AGCGCT 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 224
FaiI YATR 2 cut(s) 182, 193
FaqI GGGAC 1 cut(s) 41
Fnu4HI GCNGC 3 cut(s) 159, 162, 218
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 3 cut(s) 159, 162, 218
GlaI GCGC 1 cut(s) 123
GluI GCNGC 3 cut(s) 159, 162, 218
HaeII RGCGCY 1 cut(s) 125
HapII CCGG 1 cut(s) 8
HhaI GCGC 1 cut(s) 124
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 2 cut(s) 11, 71
HpaII CCGG 1 cut(s) 8
HphI GGTGA 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 8, 187
HpyAV CCTTC 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 17, 30
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 2 cut(s) 52, 146
HspAI GCGC 1 cut(s) 122
Kpn2I TCCGGA 1 cut(s) 7
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 5 cut(s) 21, 90, 172, 211, 238
Lsp1109I GCAGC 1 cut(s) 229
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 4 cut(s) 105, 211, 214, 217
MflI RGATCY 1 cut(s) 4
MluCI AATT 2 cut(s) 31, 75
MnlI CCTC 7 cut(s) 46, 49, 52, 59, 82, 141, 205
MroI TCCGGA 1 cut(s) 7
MseI TTAA 2 cut(s) 231, 241
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 226
NdeII GATC 1 cut(s) 4
NlaIV GGNNCC 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 118
PfeI GAWTC 2 cut(s) 11, 71
PkrI GCNGC 3 cut(s) 160, 163, 219
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 231, 241
SatI GCNGC 3 cut(s) 159, 162, 218
Sau3AI GATC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 226
SetI ASST 4 cut(s) 106, 132, 170, 241
SgeI CNNG 9 cut(s) 20, 70, 117, 166, 177, 199, 233, 237, 238
Sse9I AATT 2 cut(s) 31, 75
SsiI CCGC 2 cut(s) 158, 161
StyD4I CCNGG 1 cut(s) 224
TasI AATT 2 cut(s) 31, 75
TauI GCSGC 2 cut(s) 161, 164
TfiI GAWTC 2 cut(s) 11, 71
Tru1I TTAA 2 cut(s) 231, 241
Tru9I TTAA 2 cut(s) 231, 241
TseI GCWGC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.