RLG00000001519

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001184
Physical Location & Seq
Forward (+)
16758774 .. 16759079
306 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001519

Sequence Viewer

Length: 306 bp
ATGAATGGATCCGGAACCGGCAACCGATGCGTGCAATTCCTCCTCCTCCTCCTCCTTCTCACAATCCCGTTGTTGTTTGATTCAGTTCGGGCAAAGGACGACGACGGAAGCAGCAACAAAGCCGGTGGCTCTTCGGTAGCGCTGAAGGTAGTTATTGTGTTGCTGGGCGTGGCGGCGGTGGTTGGGTTCGGTGTGTTTCTGTTCAGGATATGGCAGAGGAAGAAGAGGGAGGAGCAGCACGCCAGGCTTCTCAAGTTGTTTGAAGACGACGATGAGCTCGAGGTTGAGCTTGGAATTAGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.14

Weight (kDa)

5.79

Isoelectric Point (pI)

19.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 2 cut(s) 173, 176
AclWI GGATC 2 cut(s) 3, 16
AcuI CTGAAG 1 cut(s) 164
AfeI AGCGCT 1 cut(s) 141
AgsI TTSAA 1 cut(s) 263
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 2 cut(s) 277, 289
AluI AGCT 2 cut(s) 277, 289
Alw21I GWGCWC 1 cut(s) 279
AlwI GGATC 2 cut(s) 3, 16
Ama87I CYCGRG 1 cut(s) 278
Aor13HI TCCGGA 1 cut(s) 11
Aor51HI AGCGCT 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 111, 235
AspLEI GCGC 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 278
BamHI GGATCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 123, 247
BciT130I CCWGG 1 cut(s) 244
BfoI RGCGCY 1 cut(s) 143
BisI GCNGC 3 cut(s) 112, 174, 236
BlsI GCNGC 3 cut(s) 113, 175, 237
Bme1390I CCNGG 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 10, 16
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 236
BsaWI WCCGGW 1 cut(s) 11
Bse118I RCCGGY 2 cut(s) 17, 122
BseAI TCCGGA 1 cut(s) 11
BseBI CCWGG 1 cut(s) 244
BseRI GAGGAG 5 cut(s) 32, 35, 38, 41, 245
BseXI GCAGC 2 cut(s) 123, 247
BseYI CCCAGC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 3 cut(s) 12, 18, 123
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 279
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 2 cut(s) 173, 176
BspEI TCCGGA 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 10, 16
BspPI GGATC 2 cut(s) 3, 16
BspQI GCTCTTC 1 cut(s) 136
BsrFI RCCGGY 2 cut(s) 17, 122
BssAI RCCGGY 2 cut(s) 17, 122
BssMI GATC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 136, 218
BstAPI GCANNNNNTGC 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 32, 240
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 2 cut(s) 27, 244
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstV1I GCAGC 2 cut(s) 123, 247
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
Cac8I GCNNGC 2 cut(s) 32, 240
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 2 cut(s) 17, 122
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviJI RGCY 5 cut(s) 122, 129, 247, 277, 289
CviKI_1 RGCY 5 cut(s) 122, 129, 247, 277, 289
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eam1104I CTCTTC 2 cut(s) 136, 218
EarI CTCTTC 2 cut(s) 136, 218
Ecl136II GAGCTC 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 279
Eco47III AGCGCT 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 279
FaiI YATR 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 112, 174, 236
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 3 cut(s) 112, 174, 236
GlaI GCGC 1 cut(s) 141
GluI GCNGC 3 cut(s) 112, 174, 236
GsaI CCCAGC 1 cut(s) 167
HaeII RGCGCY 1 cut(s) 143
HapII CCGG 3 cut(s) 12, 18, 123
HhaI GCGC 1 cut(s) 142
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 1 cut(s) 80
HpaII CCGG 3 cut(s) 12, 18, 123
Hpy188III TCNNGA 2 cut(s) 12, 205
Hpy99I CGWCG 3 cut(s) 104, 107, 272
HpyAV CCTTC 2 cut(s) 65, 139
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 244
HspAI GCGC 1 cut(s) 140
Kpn2I TCCGGA 1 cut(s) 11
Kzo9I GATC 1 cut(s) 8
LguI GCTCTTC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 7 cut(s) 25, 31, 136, 149, 190, 229, 256
Lsp1109I GCAGC 2 cut(s) 123, 247
LweI GCATC 1 cut(s) 17
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 4 cut(s) 123, 232, 235, 275
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 2 cut(s) 35, 294
MnlI CCTC 9 cut(s) 50, 53, 56, 59, 62, 210, 219, 223, 274
MroI TCCGGA 1 cut(s) 11
MspI CCGG 3 cut(s) 12, 18, 123
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 27, 244
NdeII GATC 1 cut(s) 8
NlaIV GGNNCC 2 cut(s) 10, 16
PaeR7I CTCGAG 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 113, 175, 237
Psp124BI GAGCTC 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 163
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 2 cut(s) 10, 16
PspXI VCTCGAGB 1 cut(s) 278
PsuI RGATCY 1 cut(s) 8
SacI GAGCTC 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 136
SatI GCNGC 3 cut(s) 112, 174, 236
Sau3AI GATC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 279
SetI ASST 4 cut(s) 150, 279, 285, 291
SfaNI GCATC 1 cut(s) 17
Sfr274I CTCGAG 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 2 cut(s) 251, 278
SmoI CTYRAG 2 cut(s) 251, 278
Sse9I AATT 2 cut(s) 35, 294
SsiI CCGC 2 cut(s) 173, 176
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 242
TaqI TCGA 1 cut(s) 279
TasI AATT 2 cut(s) 35, 294
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 80
TseI GCWGC 2 cut(s) 111, 235
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 120
XhoI CTCGAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.