Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001184

Physical Location & Seq

Genomic Coordinates Reverse (-)

20317489 .. 20318540

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTGGTTTCACCGAAGAAGAAGAAGGCTGGGCGCCCCAAGGGGAGCAAGAATAGAGTGAAATCCACTGATGAACAGGATGATAAAACTATCCGTAAGTATAAACGTCGGGGAAAAGCTTTGAGTTTTGATTCTAACCTTGAAACTCCTAATCCTGACAAGGTTGCTAAACAGGTGTTAGTACTAGAGGGGGTGAATGGGACTACTCCTTCAGTGGAGCCTACTGTTGTTGAGGGAGCAGTGCAATTTCGAGCAAAGGACGACGGAAGCAACAAAGTCGGTGGTTCTTCGGTAGCGCTGAAGGTAGTTATTGTGTTGTTGGGAGTGGCGGCGGTGGTTGGGTTCGGTGTGTTTATGTTCAGGATATGGCAGAGGAAGAAGAGAGAGAAGCAGCACGCCAGTCTTCTCAAGTTGTTTGAAGACGACGACGAGCTCGAGGTTGAACTTGGAATTAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.89

Weight (kDa)

9.78

Isoelectric Point (pI)

24.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09645 AT1G57765 AT1G57765
fragaria_vesca	FvH4_5g28260 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580 FvH4_5g32580
malus_domestica	MD05G1210300.v1.1 MD08G1216400.v1.1 MD08G1244000.v1.1 MD15G1403500.v1.1 MD15G1438300.v1.1
prunus_persica	Prupe.1G549500_v2.0.a1 Prupe.1G549500_v2.0.a1 Prupe.1G581300_v2.0.a1 Prupe.1G581300_v2.0.a1 Prupe.1G581300_v2.0.a1 Prupe.1G581300_v2.0.a1 Prupe.1G581300_v2.0.a1
pyrus_communis	pycom08g21170 pycom15g36080 pycom15g38630
rosa_chinensis	RchiOBHm_Chr3g0495521 RchiOBHm_Chr5g0063911 RchiOBHm_Chr7g0220501 RchiOBHm_Chr7g0229261 RchiOBHm_Chr7g0230041
rosa_laevigata	RLG00000001519 RLG00000007722
rosa_multiflora	Rmu_sc0000693.1_g000033 Rmu_sc0012148.1_g000003 Rmu_sc0015248.1_g000005 Rmu_ssc0000189.1_g000047
rosa_roxburghii	Rroxscaffold_3G00230430 Rroxscaffold_3G00239350
rosa_rugosa	Rorug07G0194100 Rorug07G0258100
rosa_samantha	Rh3AG321600 Rh5BG262600 Rh5DG271600 Rh7AG335100 Rh7BG326200 Rh7CG352800 Rh7CG427100 Rh7DG331800 Rh7DG403000
rosa_wichuraiana	Rw7G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	33
AciI	CCGC	2 cut(s)	329, 332
AcuI	CTGAAG	2 cut(s)	195, 320
AcyI	GRCGYC	1 cut(s)	34
AfaI	GTAC	1 cut(s)	183
AfeI	AGCGCT	1 cut(s)	297
AgsI	TTSAA	3 cut(s)	143, 419, 443
AluBI	AGCT	2 cut(s)	119, 433
AluI	AGCT	2 cut(s)	119, 433
Alw21I	GWGCWC	1 cut(s)	435
Ama87I	CYCGRG	1 cut(s)	434
Aor51HI	AGCGCT	1 cut(s)	297
ApeKI	GCWGC	1 cut(s)	391
AspLEI	GCGC	2 cut(s)	36, 298
AsuHPI	GGTGA	2 cut(s)	3, 205
AvaI	CYCGRG	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	435
BbsI	GAAGAC	2 cut(s)	395, 426
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	403
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BfaI	CTAG	1 cut(s)	185
BfoI	RGCGCY	2 cut(s)	37, 299
BisI	GCNGC	2 cut(s)	330, 392
BlsI	GCNGC	2 cut(s)	331, 393
BmcAI	AGTACT	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	434
BmiI	GGNNCC	2 cut(s)	35, 219
BpiI	GAAGAC	2 cut(s)	395, 426
BpuEI	CTTGAG	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	403
BseYI	CCCAGC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	435
BspACI	CCGC	2 cut(s)	329, 332
BspLI	GGNNCC	2 cut(s)	35, 219
BspT107I	GGYRCC	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	39
BssNI	GRCGYC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	85
BstH2I	RGCGCY	2 cut(s)	37, 299
BstHHI	GCGC	2 cut(s)	36, 298
BstV1I	GCAGC	1 cut(s)	403
BstV2I	GAAGAC	2 cut(s)	395, 426
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	66, 219, 246
Cac8I	GCNNGC	1 cut(s)	396
CfoI	GCGC	2 cut(s)	36, 298
Csp6I	GTAC	1 cut(s)	182
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviJI	RGCY	4 cut(s)	29, 119, 220, 433
CviKI_1	RGCY	4 cut(s)	29, 119, 220, 433
CviQI	GTAC	1 cut(s)	182
DinI	GGCGCC	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Ecl136II	GAGCTC	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	435
Eco47III	AGCGCT	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	433
Eco57I	CTGAAG	2 cut(s)	195, 320
Eco88I	CYCGRG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	435
EgeI	GGCGCC	1 cut(s)	35
EheI	GGCGCC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	39
FaiI	YATR	3 cut(s)	102, 356, 367
FaqI	GGGAC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	330, 392
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	2 cut(s)	330, 392
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	2 cut(s)	35, 297
GluI	GCNGC	2 cut(s)	330, 392
GsaI	CCCAGC	1 cut(s)	33
HaeII	RGCGCY	2 cut(s)	37, 299
HhaI	GCGC	2 cut(s)	36, 298
Hin1I	GRCGYC	1 cut(s)	34
Hin6I	GCGC	2 cut(s)	34, 296
HinP1I	GCGC	2 cut(s)	34, 296
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	2 cut(s)	3, 205
Hpy188III	TCNNGA	2 cut(s)	155, 361
Hpy99I	CGWCG	4 cut(s)	111, 266, 428, 431
HpyAV	CCTTC	3 cut(s)	19, 219, 295
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	106
Hsp92I	GRCGYC	1 cut(s)	34
HspAI	GCGC	2 cut(s)	34, 296
KasI	GGCGCC	1 cut(s)	33
LmnI	GCTCC	3 cut(s)	45, 217, 236
LpnPI	CCDG	6 cut(s)	15, 62, 158, 168, 346, 412
Lsp1109I	GCAGC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	106
MboII	GAAGA	8 cut(s)	28, 31, 34, 279, 388, 391, 395, 431
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	2 cut(s)	245, 450
Mly113I	GGCGCC	1 cut(s)	34
MnlI	CCTC	4 cut(s)	181, 226, 366, 430
NarI	GGCGCC	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	35, 219
PaeR7I	CTCGAG	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	331, 393
PluTI	GGCGCC	1 cut(s)	37
Psp124BI	GAGCTC	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	35, 219
PspXI	VCTCGAGB	1 cut(s)	434
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	435
SatI	GCNGC	2 cut(s)	330, 392
ScaI	AGTACT	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	435
SetI	ASST	8 cut(s)	109, 121, 141, 165, 177, 306, 435, 441
SfoI	GGCGCC	1 cut(s)	35
Sfr274I	CTCGAG	1 cut(s)	434
SlaI	CTCGAG	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	407, 434
SmoI	CTYRAG	2 cut(s)	407, 434
Sse9I	AATT	2 cut(s)	245, 450
SsiI	CCGC	2 cut(s)	329, 332
SspDI	GGCGCC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	185
SstI	GAGCTC	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	250, 435
TasI	AATT	2 cut(s)	245, 450
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	131
TscAI	CASTG	3 cut(s)	73, 219, 246
TseI	GCWGC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	2 cut(s)	83, 279
TspRI	CASTG	3 cut(s)	73, 219, 246
XhoI	CTCGAG	1 cut(s)	434
XspI	CTAG	1 cut(s)	185
ZrmI	AGTACT	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.