Rh7CG427100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001184
Physical Location & Seq
Reverse (-)
55691874 .. 55694805
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG427100.1

Sequence Viewer

Length: 297 bp
ATGAATGGATCCGGAACCGGCAACCGATGCGTGCAATTCCTCCTCCTTCTCACAATCCCGTTGTTGTTTGATTCAGTTCGGGCAAAGGACGACGACGGAAGCAGCAACAAAGCCGGTGGCTCTTCGGTAGCGCTGAAGGTAGTTATTGTGTTGCTGGGCGTGGCGGCGGTGGTTGGGTTCGGTGTGTTTCTGTTCAGGATATGGCAGAGGAAGAAGAGAGAGGAGCAGCACGCCAGGCTTCTCAAGCTGTTTGAAGACGACGATGAGCTCGAGGTCGAACTTGGAATTAGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.8

Weight (kDa)

5.79

Isoelectric Point (pI)

19.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 2 cut(s) 164, 167
AclWI GGATC 2 cut(s) 3, 16
AcuI CTGAAG 1 cut(s) 155
AfeI AGCGCT 1 cut(s) 132
AgsI TTSAA 1 cut(s) 254
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 2 cut(s) 247, 268
AluI AGCT 2 cut(s) 247, 268
Alw21I GWGCWC 1 cut(s) 270
AlwI GGATC 2 cut(s) 3, 16
Ama87I CYCGRG 1 cut(s) 269
Aor13HI TCCGGA 1 cut(s) 11
Aor51HI AGCGCT 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 102, 226
AspLEI GCGC 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 269
BamHI GGATCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 114, 238
BciT130I CCWGG 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 134
BisI GCNGC 3 cut(s) 103, 165, 227
BlsI GCNGC 3 cut(s) 104, 166, 228
Bme1390I CCNGG 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 10, 16
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 227
BsaWI WCCGGW 1 cut(s) 11
Bse118I RCCGGY 2 cut(s) 17, 113
BseAI TCCGGA 1 cut(s) 11
BseBI CCWGG 1 cut(s) 235
BseRI GAGGAG 2 cut(s) 32, 236
BseXI GCAGC 2 cut(s) 114, 238
BseYI CCCAGC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 3 cut(s) 12, 18, 114
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 270
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 2 cut(s) 164, 167
BspEI TCCGGA 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 10, 16
BspPI GGATC 2 cut(s) 3, 16
BspQI GCTCTTC 1 cut(s) 127
BsrFI RCCGGY 2 cut(s) 17, 113
BssAI RCCGGY 2 cut(s) 17, 113
BssMI GATC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 235
Bst6I CTCTTC 2 cut(s) 127, 209
BstAPI GCANNNNNTGC 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 32, 231
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 3 cut(s) 27, 235, 244
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 114, 238
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
Cac8I GCNNGC 2 cut(s) 32, 231
CfoI GCGC 1 cut(s) 133
Cfr10I RCCGGY 2 cut(s) 17, 113
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviJI RGCY 5 cut(s) 113, 120, 238, 247, 268
CviKI_1 RGCY 5 cut(s) 113, 120, 238, 247, 268
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eam1104I CTCTTC 2 cut(s) 127, 209
EarI CTCTTC 2 cut(s) 127, 209
Ecl136II GAGCTC 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 270
Eco47III AGCGCT 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 270
FaiI YATR 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 103, 165, 227
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 3 cut(s) 103, 165, 227
GlaI GCGC 1 cut(s) 132
GluI GCNGC 3 cut(s) 103, 165, 227
GsaI CCCAGC 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 134
HapII CCGG 3 cut(s) 12, 18, 114
HhaI GCGC 1 cut(s) 133
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 1 cut(s) 71
HpaII CCGG 3 cut(s) 12, 18, 114
Hpy188III TCNNGA 2 cut(s) 12, 196
Hpy99I CGWCG 3 cut(s) 95, 98, 263
HpyAV CCTTC 2 cut(s) 56, 130
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 235, 244
HspAI GCGC 1 cut(s) 131
Kpn2I TCCGGA 1 cut(s) 11
Kzo9I GATC 1 cut(s) 8
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 7 cut(s) 25, 31, 127, 140, 181, 220, 247
Lsp1109I GCAGC 2 cut(s) 114, 238
LweI GCATC 1 cut(s) 17
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 4 cut(s) 114, 223, 226, 266
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 2 cut(s) 35, 285
MnlI CCTC 5 cut(s) 50, 53, 201, 214, 265
MroI TCCGGA 1 cut(s) 11
MspI CCGG 3 cut(s) 12, 18, 114
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 3 cut(s) 27, 235, 244
NdeII GATC 1 cut(s) 8
NlaIV GGNNCC 2 cut(s) 10, 16
PaeR7I CTCGAG 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 104, 166, 228
Psp124BI GAGCTC 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 10, 16
PspXI VCTCGAGB 1 cut(s) 269
PsuI RGATCY 1 cut(s) 8
SacI GAGCTC 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 127
SatI GCNGC 3 cut(s) 103, 165, 227
Sau3AI GATC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 235
SduI GDGCHC 1 cut(s) 270
SetI ASST 4 cut(s) 141, 249, 270, 276
SfaNI GCATC 1 cut(s) 17
Sfr274I CTCGAG 1 cut(s) 269
SlaI CTCGAG 1 cut(s) 269
SmlI CTYRAG 2 cut(s) 242, 269
SmoI CTYRAG 2 cut(s) 242, 269
Sse9I AATT 2 cut(s) 35, 285
SsiI CCGC 2 cut(s) 164, 167
SstI GAGCTC 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 233
TaqI TCGA 2 cut(s) 270, 276
TasI AATT 2 cut(s) 35, 285
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 71
TseI GCWGC 2 cut(s) 102, 226
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 111
XhoI CTCGAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.