Prupe.1G581300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001184
Physical Location & Seq
Reverse (-)
47253563 .. 47257810
4248 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G581300.2

Sequence Viewer

Length: 315 bp
ATGAGTGCAATTTGTGGCTGCAGATCGTTGAGTTTGTTTGTATTATTGGCTTCAATTTCTCTACAATTCATCCCAGGATTTTCTGATGATTCATCGAGTTCCAAAAATGAGAAAAAAGCTGTGACGCATTCTACTTCCAGTCACACTGGATCTACGTTGGCCATCATATTCCTTGGACTTGTAGTAGTTGCATTGTTCTCCTTTTTCCTTTTCAAGCTATGGCAAAAGAAGAAACGAGAAGAACAGTATGCCCGTCTTTTGAAGTTGTTTGAAGAGGATGATGAACTTGAGCTTGAACTTGGTCTTCGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.68

Weight (kDa)

6.1

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 159
AgsI TTSAA 5 cut(s) 54, 214, 262, 272, 296
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 3 cut(s) 119, 217, 292
AluI AGCT 3 cut(s) 119, 217, 292
AlwI GGATC 1 cut(s) 157
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 18
BalI TGGCCA 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 5
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 19
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 308
BsaJI CCNNGG 2 cut(s) 73, 172
Bse1I ACTGG 2 cut(s) 138, 151
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 2 cut(s) 73, 172
BseGI GGATG 2 cut(s) 69, 283
BseNI ACTGG 2 cut(s) 138, 151
BseXI GCAGC 1 cut(s) 5
BshFI GGCC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 23, 149
BspANI GGCC 1 cut(s) 161
BspMAI CTGCAG 1 cut(s) 23
BspPI GGATC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 138, 151
BssECI CCNNGG 2 cut(s) 73, 172
BssMI GATC 2 cut(s) 23, 149
BssT1I CCWWGG 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 267
BstF5I GGATG 2 cut(s) 69, 283
BstKTI GATC 2 cut(s) 26, 152
BstMBI GATC 2 cut(s) 23, 149
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 5
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 2 cut(s) 69, 283
BtsIMutI CAGTG 1 cut(s) 144
CseI GACGC 1 cut(s) 133
CviJI RGCY 6 cut(s) 18, 50, 119, 161, 217, 292
CviKI_1 RGCY 6 cut(s) 18, 50, 119, 161, 217, 292
DpnI GATC 2 cut(s) 25, 151
DpnII GATC 2 cut(s) 23, 149
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaiI YATR 3 cut(s) 167, 220, 249
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 2 cut(s) 56, 290
Fsp4HI GCNGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 19
HaeIII GGCC 1 cut(s) 161
HgaI GACGC 1 cut(s) 133
HinfI GANTC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 3 cut(s) 8, 21, 191
HpySE526I ACGT 1 cut(s) 155
Kzo9I GATC 2 cut(s) 23, 149
LpnPI CCDG 4 cut(s) 60, 87, 132, 151
Lsp1109I GCAGC 1 cut(s) 5
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 121, 140
MalI GATC 2 cut(s) 25, 151
MboI GATC 2 cut(s) 23, 149
MboII GAAGA 4 cut(s) 241, 251, 284, 296
MflI RGATCY 1 cut(s) 149
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 3 cut(s) 9, 54, 65
MluNI TGGCCA 1 cut(s) 161
MnlI CCTC 1 cut(s) 268
Mox20I TGGCCA 1 cut(s) 161
MscI TGGCCA 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 1 cut(s) 75
NdeII GATC 2 cut(s) 23, 149
NmuCI GTSAC 2 cut(s) 121, 140
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PstI CTGCAG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 149
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 2 cut(s) 23, 149
ScrFI CCNGG 1 cut(s) 75
SetI ASST 4 cut(s) 121, 158, 219, 294
SfcI CTRYAG 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 3 cut(s) 9, 54, 65
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 246
TaiI ACGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 95
TasI AATT 3 cut(s) 9, 54, 65
TfiI GAWTC 1 cut(s) 89
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 2 cut(s) 121, 140
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 2 cut(s) 121, 140
TspDTI ATGAA 3 cut(s) 58, 81, 297
TspRI CASTG 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.