RchiOBHm_Chr5g0063911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001184
Physical Location & Seq
Reverse (-)
69717772 .. 69718044
273 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33998

Sequence Viewer

Length: 273 bp
ATGCATGCAATTCCTCCTCCTCCTCCTCCTTCTCACAATCCCGTTGTTTTTGATTCAGTTCGGGCAAAGGACGACAGAAGCGACGAAGCCGGTGGTTCTTCGATAGCGCTGAAGGTAGTTATTGTGTTGCTGGGCGTGGTGGCGATGGTTGGGTTCGGTGTGTTTCTGTTCAGGATATGGCAGAGGAAGAAGAGAGAGGAGCAGCACGACAGGCTTCTCAAGTTGTTTGAAGACGACGATGAGCTCGAGGTTGAACTTGGAATTAGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.15

Weight (kDa)

5.29

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 131
AfeI AGCGCT 1 cut(s) 108
AgsI TTSAA 2 cut(s) 230, 254
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
Alw21I GWGCWC 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 245
Aor51HI AGCGCT 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 202
AspLEI GCGC 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 245
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 214
BccI CCATC 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 110
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 89
BseRI GAGGAG 5 cut(s) 6, 9, 12, 15, 212
BseXI GCAGC 1 cut(s) 214
BseYI CCCAGC 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 6
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 237
BtgZI GCGATG 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 89
CviAII CATG 1 cut(s) 5
CviJI RGCY 3 cut(s) 89, 214, 244
CviKI_1 RGCY 3 cut(s) 89, 214, 244
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 246
Eco47III AGCGCT 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 1 cut(s) 8
FaiI YATR 2 cut(s) 6, 178
FatI CATG 1 cut(s) 4
Fnu4HI GCNGC 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 203
GlaI GCGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 203
GsaI CCCAGC 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 110
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 8
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 1 cut(s) 53
HpaII CCGG 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 172
Hpy99I CGWCG 2 cut(s) 86, 239
HpyAV CCTTC 2 cut(s) 39, 106
HpyCH4V TGCA 2 cut(s) 4, 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
Hsp92II CATG 1 cut(s) 8
HspAI GCGC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 4 cut(s) 103, 116, 157, 196
Lsp1109I GCAGC 1 cut(s) 214
MboII GAAGA 4 cut(s) 90, 199, 202, 242
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 9, 261
MnlI CCTC 8 cut(s) 24, 27, 30, 33, 36, 177, 190, 241
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 211
NlaIII CATG 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PaeR7I CTCGAG 1 cut(s) 245
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 243
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 130
PspXI VCTCGAGB 1 cut(s) 245
SacI GAGCTC 1 cut(s) 246
SatI GCNGC 1 cut(s) 203
SduI GDGCHC 1 cut(s) 246
SetI ASST 3 cut(s) 117, 246, 252
Sfr274I CTCGAG 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 218, 245
SmoI CTYRAG 2 cut(s) 218, 245
SphI GCATGC 1 cut(s) 8
Sse9I AATT 2 cut(s) 9, 261
SstI GAGCTC 1 cut(s) 246
TaqI TCGA 2 cut(s) 101, 246
TasI AATT 2 cut(s) 9, 261
TfiI GAWTC 1 cut(s) 53
TseI GCWGC 1 cut(s) 202
XceI RCATGY 1 cut(s) 8
XhoI CTCGAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.