AT1G10155

Phloem protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003915
Physical Location & Seq
Reverse (-)
3325825 .. 3328448
2624 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10155.1

Sequence Viewer

Length: 555 bp
ATGTCTGTCCAAAAAGCTGTCAAGAGTTCTCACTACGAGGCAGAATCCAACATGGAACAAGATATTGTTAGAAAAGCATGGGTCTTTAAGCCAAGTGGTCTTAATTTCATATGGGGAGGTGATTCTCGGTATTGGGTCATCCCTAACGAAGACAGGACGCCTGCTGAACTAAAGAAAGTGAGTTGGTTAGAAGTAACCGGTTCGTACGACAAGATAGAACCAGGCAAAACATACCGAATTGGTTTTAAAATCTCGTTCACAGCTGATGCAACCGGATGGGACCAAGCTCCAGTTTTCATGTCAGCAAAAATTGGAAAGAAAGGGAGGACAATTTGGAAGAGGATCAAATCGGTTAACAATAACTTTGACAAACTCAAAGGCGGAACCGGACCGGTTAACATACCAGATGAGACTGATGGTCGGTTTGAGATCTTTGTAAGTCCCAAGGTAGCAATAAACCAAGACACCAAGCTCCAATTTGGTTTGTATGAAGTGTGGACCGGAAAATGGAAAACAGGCTTGTTGATCTATGAAGCTTTTGTTGAAGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

184

Amino Acids

20.95

Weight (kDa)

9.12

Isoelectric Point (pI)

25.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 26 - 177 2.7e-19 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 381
AclWI GGATC 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 507
AgeI ACCGGT 2 cut(s) 197, 391
AgsI TTSAA 1 cut(s) 545
AhdI GACNNNNNGTC 1 cut(s) 417
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 5 cut(s) 17, 263, 287, 472, 536
AluI AGCT 5 cut(s) 17, 263, 287, 472, 536
Alw26I GTCTC 1 cut(s) 404
AlwI GGATC 1 cut(s) 350
AsiGI ACCGGT 2 cut(s) 197, 391
AspS9I GGNCC 3 cut(s) 280, 389, 498
AsuHPI GGTGA 1 cut(s) 131
AvaII GGWCC 3 cut(s) 280, 389, 498
BbsI GAAGAC 1 cut(s) 156
BccI CCATC 2 cut(s) 270, 410
BciT130I CCWGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 404
BglII AGATCT 1 cut(s) 429
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 3 cut(s) 280, 389, 498
BmeRI GACNNNNNGTC 1 cut(s) 417
BmgT120I GGNCC 3 cut(s) 280, 389, 498
BmiI GGNNCC 2 cut(s) 281, 385
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 444
BsaWI WCCGGW 5 cut(s) 197, 272, 386, 391, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 507
Bse118I RCCGGY 2 cut(s) 197, 391
Bse1I ACTGG 1 cut(s) 290
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 2 cut(s) 138, 281
BseLI CCNNNNNNNGG 1 cut(s) 507
BseNI ACTGG 1 cut(s) 290
BshTI ACCGGT 2 cut(s) 197, 391
BsiSI CCGG 5 cut(s) 198, 273, 387, 392, 501
BsiWI CGTACG 1 cut(s) 204
BslFI GGGAC 2 cut(s) 293, 426
BslI CCNNNNNNNGG 1 cut(s) 507
BsmAI GTCTC 1 cut(s) 404
BsmFI GGGAC 2 cut(s) 293, 426
Bsp143I GATC 3 cut(s) 342, 429, 525
BspACI CCGC 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 281, 385
BspPI GGATC 1 cut(s) 350
BsrFI RCCGGY 2 cut(s) 197, 391
BsrI ACTGG 1 cut(s) 290
BssAI RCCGGY 2 cut(s) 197, 391
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 3 cut(s) 342, 429, 525
BssNI GRCGYC 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 332
BstACI GRCGYC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 162
BstF5I GGATG 2 cut(s) 138, 281
BstKTI GATC 3 cut(s) 345, 432, 528
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 3 cut(s) 342, 429, 525
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BtsCI GGATG 2 cut(s) 138, 281
Cac8I GCNNGC 1 cut(s) 162
Cfr10I RCCGGY 2 cut(s) 197, 391
Cfr13I GGNCC 3 cut(s) 280, 389, 498
CpoI CGGWCCG 1 cut(s) 389
CseI GACGC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 205
CspAI ACCGGT 2 cut(s) 197, 391
CspI CGGWCCG 1 cut(s) 389
CviAII CATG 3 cut(s) 52, 78, 298
CviJI RGCY 7 cut(s) 17, 91, 263, 287, 472, 519, 536
CviKI_1 RGCY 7 cut(s) 17, 91, 263, 287, 472, 519, 536
CviQI GTAC 1 cut(s) 205
DpnI GATC 3 cut(s) 344, 431, 527
DpnII GATC 3 cut(s) 342, 429, 525
DraI TTTAAA 1 cut(s) 247
DriI GACNNNNNGTC 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 332
Eam1105I GACNNNNNGTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 332
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 444
Eco47I GGWCC 3 cut(s) 280, 389, 498
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 3 cut(s) 55, 81, 301
FaiI YATR 9 cut(s) 53, 79, 110, 112, 232, 299, 401, 489, 531
FaqI GGGAC 2 cut(s) 293, 426
FatI CATG 3 cut(s) 51, 77, 297
FauNDI CATATG 1 cut(s) 110
FokI GGATG 2 cut(s) 125, 288
GsuI CTGGAG 1 cut(s) 273
HapII CCGG 5 cut(s) 198, 273, 387, 392, 501
HgaI GACGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 3 cut(s) 55, 81, 301
HincII GTYRAC 2 cut(s) 355, 397
HindII GTYRAC 2 cut(s) 355, 397
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 2 cut(s) 44, 122
HpaI GTTAAC 2 cut(s) 355, 397
HpaII CCGG 5 cut(s) 198, 273, 387, 392, 501
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 4 cut(s) 258, 355, 397, 498
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 4 cut(s) 258, 355, 397, 498
HpyCH4V TGCA 1 cut(s) 269
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 3 cut(s) 55, 81, 301
KspAI GTTAAC 2 cut(s) 355, 397
Kzo9I GATC 3 cut(s) 342, 429, 525
LmnI GCTCC 2 cut(s) 292, 477
LweI GCATC 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 193
MalI GATC 3 cut(s) 344, 431, 527
MboI GATC 3 cut(s) 342, 429, 525
MboII GAAGA 2 cut(s) 161, 349
MflI RGATCY 1 cut(s) 429
MluCI AATT 5 cut(s) 103, 237, 309, 330, 476
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 4 cut(s) 31, 110, 318, 333
MseI TTAA 5 cut(s) 87, 102, 246, 354, 396
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 5 cut(s) 198, 273, 387, 392, 501
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
NdeI CATATG 1 cut(s) 110
NdeII GATC 3 cut(s) 342, 429, 525
NlaIII CATG 3 cut(s) 55, 81, 301
NlaIV GGNNCC 2 cut(s) 281, 385
PfeI GAWTC 2 cut(s) 44, 122
Pfl23II CGTACG 1 cut(s) 204
PinAI ACCGGT 2 cut(s) 197, 391
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspLI CGTACG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 281, 385
PspPI GGNCC 3 cut(s) 280, 389, 498
PsuI RGATCY 1 cut(s) 429
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
Rsr2I CGGWCCG 1 cut(s) 389
RsrII CGGWCCG 1 cut(s) 389
SaqAI TTAA 5 cut(s) 87, 102, 246, 354, 396
Sau3AI GATC 3 cut(s) 342, 429, 525
Sau96I GGNCC 3 cut(s) 280, 389, 498
ScrFI CCNGG 1 cut(s) 222
SetI ASST 7 cut(s) 19, 121, 265, 289, 450, 474, 538
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 3 cut(s) 280, 389, 498
Sse9I AATT 5 cut(s) 103, 237, 309, 330, 476
SsiI CCGC 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 1 cut(s) 444
TasI AATT 5 cut(s) 103, 237, 309, 330, 476
TfiI GAWTC 2 cut(s) 44, 122
Tru1I TTAA 5 cut(s) 87, 102, 246, 354, 396
Tru9I TTAA 5 cut(s) 87, 102, 246, 354, 396
TspDTI ATGAA 4 cut(s) 97, 286, 504, 546
VpaK11BI GGWCC 3 cut(s) 280, 389, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.