Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003915

Physical Location & Seq

Genomic Coordinates Reverse (-)

25164823 .. 25165873

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCTATGACAACTAAACCTCATTTCCAAGCAGACCAAGATGAAATAAAACAGGAGGGAAATAATTACATCTTCAGACCACGGGGACTTAGCATTGTATGGGGCAATGATGAACGCTACTGGAAGTTACCTAACAAGAAGCAATCTAAGGATGAACCTACTGAACCTGCGGAGCTGATACAGGTTTCTTGGCTGGAAGTAACCGGCTCATATGGTTTAACACCTGCGAAAAAATATGAAATTAGTTTCGACGTAGAACTGGCACCTGATGCATTTGGTTGGAGAGACATACAAGCTTTCTTGATGGCCAAGGTAGGGAAAAAGGGTAAGTACACTTGGACCAAAGTTAAAGTTGCAGCACAGGATCCAAAAGACAGTAGATTCACAATTCCTGATGACAACGGCCCGCGAATGAGAATTGAAGTTCCGCAGAATGCTCTGGATAGCACGCTTCATTTTGGACTGTATGAAGTCTGGAGTGGAAAATGGAAGGGGGGCTTGAAAATTCATCAAGCATTTGTGAAAGATGTAACTCCGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

181

Amino Acids

20.66

Weight (kDa)

8.92

Isoelectric Point (pI)

24.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10155 AT1G31200
fragaria_vesca	FvH4_3g12160 FvH4_3g12160
malus_domestica	MD05G1254300.v1.1 MD10G1234200.v1.1 MD10G1234400.v1.1
prunus_persica	Prupe.4G110400_v2.0.a1 Prupe.4G110400_v2.0.a1
pyrus_communis	pycom05g23220
rosa_chinensis	RchiOBHm_Chr5g0019901 RchiOBHm_Chr5g0019921 RchiOBHm_Chr5g0019931
rosa_laevigata	RLG00000032483 RLG00000032485 RLG00000032487
rosa_multiflora	Rmu_sc0000344.1_g000007 Rmu_sc0002250.1_g000021
rosa_roxburghii	Rroxscaffold_1G00058250 Rroxscaffold_1G00058260 Rroxscaffold_1G00058270
rosa_rugosa	Rorug05G0055300 Rorug05G0055400
rosa_samantha	Rh5AG145000 Rh5AG145400 Rh5BG144800 Rh5BG144900 Rh5CG156100 Rh5CG156300 Rh5CG156400 Rh5DG144000 Rh5DG144200
rosa_wichuraiana	Rw5G012830 Rw5G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
Acc36I	ACCTGC	2 cut(s)	175, 232
AccB1I	GGYRCC	1 cut(s)	262
AccII	CGCG	1 cut(s)	409
AciI	CCGC	3 cut(s)	170, 407, 428
AclWI	GGATC	2 cut(s)	359, 372
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	504
AcuI	CTGAAG	1 cut(s)	58
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	2 cut(s)	422, 502
AluBI	AGCT	2 cut(s)	175, 296
AluI	AGCT	2 cut(s)	175, 296
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	2 cut(s)	359, 372
AoxI	GGCC	2 cut(s)	306, 403
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	504
AspS9I	GGNCC	2 cut(s)	339, 404
AvaII	GGWCC	1 cut(s)	339
BalI	TGGCCA	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	1 cut(s)	298
BceAI	ACGGC	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	279
BfuAI	ACCTGC	2 cut(s)	175, 232
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	339, 404
BmiI	GGNNCC	2 cut(s)	264, 366
BmsI	GCATC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	496
BsaJI	CCNNGG	2 cut(s)	80, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	125, 264
Bse3DI	GCAATG	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	80, 309
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMI	GCAATG	1 cut(s)	112
BseNI	ACTGG	2 cut(s)	125, 264
BseXI	GCAGC	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	2 cut(s)	308, 405
BshNI	GGYRCC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	308, 405
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	3 cut(s)	170, 407, 428
BspANI	GGCC	2 cut(s)	308, 405
BspFNI	CGCG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	264, 366
BspMI	ACCTGC	2 cut(s)	175, 232
BspPI	GGATC	2 cut(s)	359, 372
BspT107I	GGYRCC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	125, 264
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	80, 309
BssMI	GATC	1 cut(s)	364
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	377, 465
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	407, 449
BstDEI	CTNAG	2 cut(s)	89, 147
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	409
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	308, 405
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	157
BveI	ACCTGC	2 cut(s)	175, 232
Cac8I	GCNNGC	2 cut(s)	407, 449
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	339, 404
Csp6I	GTAC	1 cut(s)	331
CviJI	RGCY	7 cut(s)	175, 193, 207, 296, 308, 405, 498
CviKI_1	RGCY	7 cut(s)	175, 193, 207, 296, 308, 405, 498
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	2 cut(s)	89, 147
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	309
FaiI	YATR	7 cut(s)	8, 100, 211, 213, 237, 290, 468
FalI	AAGNNNNNCTT	2 cut(s)	482, 514
FaqI	GGGAC	1 cut(s)	99
FauI	CCCGC	1 cut(s)	414
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	496
HaeIII	GGCC	2 cut(s)	308, 405
HapII	CCGG	1 cut(s)	204
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	1 cut(s)	381
HpaII	CCGG	1 cut(s)	204
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	77, 537
Hpy188III	TCNNGA	4 cut(s)	301, 392, 440, 475
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	2 cut(s)	377, 465
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	272, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	89, 147
HpySE526I	ACGT	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	3 cut(s)	126, 199, 529
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	5 cut(s)	64, 240, 387, 417, 504
MluNI	TGGCCA	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	2 cut(s)	30, 49
Mox20I	TGGCCA	1 cut(s)	308
Mph1103I	ATGCAT	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	2 cut(s)	218, 348
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	439
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	364
NlaIV	GGNNCC	2 cut(s)	264, 366
NsiI	ATGCAT	1 cut(s)	274
PaqCI	CACCTGC	1 cut(s)	232
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	264, 366
PspPI	GGNCC	2 cut(s)	339, 404
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SaqAI	TTAA	2 cut(s)	218, 348
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	2 cut(s)	339, 404
SfaNI	GCATC	1 cut(s)	259
SinI	GGWCC	1 cut(s)	339
Sse9I	AATT	5 cut(s)	64, 240, 387, 417, 504
SsiI	CCGC	3 cut(s)	170, 407, 428
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	2 cut(s)	377, 465
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	249
TasI	AATT	5 cut(s)	64, 240, 387, 417, 504
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	2 cut(s)	218, 348
Tru9I	TTAA	2 cut(s)	218, 348
TseI	GCWGC	1 cut(s)	356
TspDTI	ATGAA	7 cut(s)	57, 126, 168, 252, 443, 483, 497
VpaK11BI	GGWCC	1 cut(s)	339
XapI	RAATTY	1 cut(s)	504
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.