Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000344.1

Orthogroup ID

OG0003915

Physical Location & Seq

Genomic Coordinates Reverse (-)

18628 .. 19762

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000344.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgactaaacctcatcaccaagcagagaaagaagaagtcataccgctgggagagaactaccttatcaaaccacgaggacttaatattgtatggggcaatgatgaacgctactggaaaataccagccaaagggactgaggatcctgcggagctggtacaggtctcgtggctggaagtaacaggctcagttgatgggttgagacccgggaagtatgatctaaccttcgaggtggcactggcaggagatgcatttggttggaaagacatacaagtgttcttgatggcaaagctagggaaaaagggaaggtacaaatggacaagagttaaactcgatcaggataagaataacgtgaaagttataattcctgataaccagaagcttagcattgatgttccatctgctgcaagtgacaccacccttcattttggtctgtatgaagtgtggagtgggaaatggaaaggaggcttgaagatttataatgcgcaagtaaaaactgcgactccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

168

Amino Acids

18.95

Weight (kDa)

8.94

Isoelectric Point (pI)

8.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10155 AT1G31200
fragaria_vesca	FvH4_3g12160 FvH4_3g12160
malus_domestica	MD05G1254300.v1.1 MD10G1234200.v1.1 MD10G1234400.v1.1
prunus_persica	Prupe.4G110400_v2.0.a1 Prupe.4G110400_v2.0.a1
pyrus_communis	pycom05g23220
rosa_chinensis	RchiOBHm_Chr5g0019901 RchiOBHm_Chr5g0019921 RchiOBHm_Chr5g0019931
rosa_laevigata	RLG00000032483 RLG00000032485 RLG00000032487
rosa_multiflora	Rmu_sc0000344.1_g000007 Rmu_sc0002250.1_g000021
rosa_roxburghii	Rroxscaffold_1G00058250 Rroxscaffold_1G00058260 Rroxscaffold_1G00058270
rosa_rugosa	Rorug05G0055300 Rorug05G0055400
rosa_samantha	Rh5AG145000 Rh5AG145400 Rh5BG144800 Rh5BG144900 Rh5CG156100 Rh5CG156300 Rh5CG156400 Rh5DG144000 Rh5DG144200
rosa_wichuraiana	Rw5G012830 Rw5G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	359, 477
Acc16I	TGCGCA	1 cut(s)	483
AciI	CCGC	2 cut(s)	44, 146
AclWI	GGATC	2 cut(s)	134, 147
AfaI	GTAC	2 cut(s)	156, 308
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	469
AluBI	AGCT	3 cut(s)	151, 289, 379
AluI	AGCT	3 cut(s)	151, 289, 379
Alw26I	GTCTC	2 cut(s)	166, 193
AlwI	GGATC	2 cut(s)	134, 147
Ama87I	CYCGRG	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	484
AsuC2I	CCSGG	2 cut(s)	204, 205
AsuHPI	GGTGA	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	139
BarI	GAAGNNNNNNTAC	2 cut(s)	24, 56
BauI	CACGAG	2 cut(s)	72, 163
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	3 cut(s)	185, 274, 403
BcnI	CCSGG	2 cut(s)	204, 205
BcoDI	GTCTC	2 cut(s)	166, 193
BfaI	CTAG	1 cut(s)	290
BisI	GCNGC	1 cut(s)	402
BlpI	GCTNAGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	2 cut(s)	204, 205
BmeT110I	CYCGRG	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	204, 205
BmsI	GCATC	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
Bpu1102I	GCTNAGC	1 cut(s)	380
BpuMI	CCSGG	2 cut(s)	204, 205
BsaI	GGTCTC	2 cut(s)	166, 193
BsaJI	CCNNGG	1 cut(s)	203
BsaXI	ACNNNNNCTCC	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	116, 240
Bse3DI	GCAATG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	126, 198
BseNI	ACTGG	2 cut(s)	116, 240
BseXI	GCAGC	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	2 cut(s)	166, 193
BsmFI	GGGAC	1 cut(s)	145
Bso31I	GGTCTC	2 cut(s)	166, 193
BsoBI	CYCGRG	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	139, 214, 331
Bsp1720I	GCTNAGC	1 cut(s)	380
BspACI	CCGC	2 cut(s)	44, 146
BspCNI	CTCAG	2 cut(s)	127, 197
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	134, 147
BspTNI	GGTCTC	2 cut(s)	166, 193
BsrDI	GCAATG	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	116, 240
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	3 cut(s)	139, 214, 331
BssSI	CACGAG	2 cut(s)	72, 163
Bst2BI	CACGAG	2 cut(s)	72, 163
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstDEI	CTNAG	3 cut(s)	135, 184, 380
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	3 cut(s)	142, 217, 334
BstMAI	GTCTC	2 cut(s)	166, 193
BstMBI	GATC	3 cut(s)	139, 214, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstSCI	CCNGG	2 cut(s)	202, 203
BstV1I	GCAGC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	484
Cfr9I	CCCGGG	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	155, 307
CviJI	RGCY	7 cut(s)	125, 151, 169, 183, 289, 379, 465
CviKI_1	RGCY	7 cut(s)	125, 151, 169, 183, 289, 379, 465
CviQI	GTAC	2 cut(s)	155, 307
DdeI	CTNAG	3 cut(s)	135, 184, 380
DpnI	GATC	3 cut(s)	141, 216, 333
DpnII	GATC	3 cut(s)	139, 214, 331
Eco31I	GGTCTC	2 cut(s)	166, 193
Eco88I	CYCGRG	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	250
FaiI	YATR	7 cut(s)	41, 91, 213, 266, 359, 435, 477
FaqI	GGGAC	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	290
FspI	TGCGCA	1 cut(s)	483
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	1 cut(s)	402
GsaI	CCCAGC	1 cut(s)	50
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	484
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	1 cut(s)	499
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	8
Hpy188III	TCNNGA	3 cut(s)	277, 335, 365
HpyAV	CCTTC	3 cut(s)	232, 297, 428
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	2 cut(s)	248, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	3 cut(s)	135, 184, 380
HpySE526I	ACGT	1 cut(s)	348
HspAI	GCGC	1 cut(s)	482
Kzo9I	GATC	3 cut(s)	139, 214, 331
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	175, 407
MalI	GATC	3 cut(s)	141, 216, 333
MboI	GATC	3 cut(s)	139, 214, 331
MboII	GAAGA	2 cut(s)	44, 481
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	5 cut(s)	21, 68, 130, 220, 455
Mph1103I	ATGCAT	1 cut(s)	250
MseI	TTAA	2 cut(s)	81, 324
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	204, 205
MwoI	GCNNNNNNNGC	1 cut(s)	245
NciI	CCSGG	2 cut(s)	204, 205
NdeII	GATC	3 cut(s)	139, 214, 331
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	407
NsbI	TGCGCA	1 cut(s)	483
NsiI	ATGCAT	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PsiI	TTATAA	2 cut(s)	359, 477
PspFI	CCCAGC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	2 cut(s)	156, 308
RsaNI	GTAC	2 cut(s)	155, 307
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	81, 324
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	3 cut(s)	139, 214, 331
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	204, 205
SfaNI	GCATC	1 cut(s)	235
SmaI	CCCGGG	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	2 cut(s)	44, 146
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	202, 203
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	2 cut(s)	225, 330
TasI	AATT	1 cut(s)	360
Tru1I	TTAA	2 cut(s)	81, 324
Tru9I	TTAA	2 cut(s)	81, 324
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	117, 410, 450
TspMI	CCCGGG	1 cut(s)	203
TspRI	CASTG	1 cut(s)	240
XmaI	CCCGGG	1 cut(s)	203
XspI	CTAG	1 cut(s)	290
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.