Rh5CG156400

Protein PHLOEM PROTEIN 2-LIKE A9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003915
Physical Location & Seq
Forward (+)
14495235 .. 14498271
3037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG156400.1

Sequence Viewer

Length: 756 bp
ATGTCTATGACTAAACCTCATTTCCAAGCAGAGAAAGATGAAGATGCAGTCCAAAAGATTGGAGATGGCTACAATATCAAACCACGAGGACTTAACATTGTATGGGGCAATGATGAACGCTACTGGAAAATACCAGCCAAAGGGCCTGCAGGTGTCGATGTTGCTGCAGAGCTGGTGCAGGTTTCATGGCTGGAAGTAACAGGCTCAGTTGTTTTAACACCTGGGAAGACTTATAAACTGAACTTTGAGGTACAACTGCTATCAGAGGCATTTGGCTGGAAAGATATACAAGCTTTCTTGATGGCCAAGGTAGGGAAAAAGGGAAGATACACGTGGAAAAGGGTTCAAGTACAGCAGCAGGCTGGGACAGGAAACTTCTTTATTCCTAAGGAAGAAGATGAGCTCCGCATTGAAGTTCCACCTGGGAATACTGACAACACCCTTCAGTTCGGTCTGTATGAAGTGTGGAGTGGGAAATGGAAAGGAGGCTTGAAGATCTATAATGCGAAACTCGACATCACCATGAGAATAAACCGAAAACAAAGAACGGAAGAGGTTTACTGGGCATCTTATCTCTGTTCGGTTGCAAATTTCAACCCTCATCCTCGTCCAAACCAGAATTGCTTTACACACCTGGTGCTGGATATGAAGTTCATCATGCATGATGTGCACGCCAGGAAAATGACTAATGTAGCCCCGGCTTGCTATATATATGTGTACGAGCAGCATGGGAACAGAAAAGAAGCGTGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

251

Amino Acids

28.81

Weight (kDa)

9.0

Isoelectric Point (pI)

23.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 24 - 167 3.4e-21 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AarI CACCTGC 1 cut(s) 140
Acc36I ACCTGC 2 cut(s) 140, 169
AciI CCGC 1 cut(s) 406
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 589
AcuI CTGAAG 1 cut(s) 428
AcvI CACGTG 1 cut(s) 333
AdeI CACNNNGTG 1 cut(s) 637
AfaI GTAC 4 cut(s) 252, 351, 719, 751
AfiI CCNNNNNNNGG 3 cut(s) 140, 312, 640
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 4 cut(s) 347, 413, 493, 595
AjnI CCWGG 4 cut(s) 220, 421, 633, 674
AloI GAACNNNNNNTCC 2 cut(s) 635, 667
AluBI AGCT 3 cut(s) 172, 293, 403
AluI AGCT 3 cut(s) 172, 293, 403
Alw21I GWGCWC 2 cut(s) 405, 672
Alw44I GTGCAC 1 cut(s) 668
AoxI GGCC 2 cut(s) 143, 303
ApaLI GTGCAC 1 cut(s) 668
ApeKI GCWGC 3 cut(s) 164, 355, 724
ApoI RAATTY 1 cut(s) 589
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 698
AsuHPI GGTGA 1 cut(s) 511
AxyI CCTNAGG 1 cut(s) 387
BaeGI GKGCMC 1 cut(s) 672
BalI TGGCCA 1 cut(s) 305
BanII GRGCYC 1 cut(s) 405
BauI CACGAG 1 cut(s) 84
BbrPI CACGTG 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 2 cut(s) 405, 672
BbvI GCAGC 3 cut(s) 151, 367, 736
BccI CCATC 2 cut(s) 59, 295
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 4 cut(s) 222, 423, 635, 676
BcnI CCSGG 1 cut(s) 698
BfmI CTRYAG 2 cut(s) 147, 165
BfuAI ACCTGC 2 cut(s) 140, 169
BglII AGATCT 1 cut(s) 495
BisI GCNGC 3 cut(s) 165, 356, 725
BlsI GCNGC 3 cut(s) 166, 357, 726
Bme1390I CCNGG 5 cut(s) 222, 423, 635, 676, 698
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 5 cut(s) 222, 423, 635, 676, 698
BmrI ACTGGG 1 cut(s) 571
BmsI GCATC 2 cut(s) 34, 575
BmuI ACTGGG 1 cut(s) 571
BpiI GAAGAC 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 698
BsaAI YACGTR 2 cut(s) 333, 753
BsaJI CCNNGG 4 cut(s) 221, 306, 422, 696
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 312, 640
Bse1I ACTGG 2 cut(s) 128, 566
Bse21I CCTNAGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 115
BseBI CCWGG 4 cut(s) 222, 423, 635, 676
BseDI CCNNGG 4 cut(s) 221, 306, 422, 696
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 3 cut(s) 140, 312, 640
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 2 cut(s) 128, 566
BseSI GKGCMC 1 cut(s) 672
BseXI GCAGC 3 cut(s) 151, 367, 736
BseYI CCCAGC 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 197
BshFI GGCC 2 cut(s) 145, 305
BsiHKAI GWGCWC 2 cut(s) 405, 672
BsiSI CCGG 1 cut(s) 698
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 3 cut(s) 140, 312, 640
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 2 cut(s) 145, 305
Bsp1286I GDGCHC 2 cut(s) 405, 672
Bsp143I GATC 1 cut(s) 495
BspACI CCGC 1 cut(s) 406
BspANI GGCC 2 cut(s) 145, 305
BspCNI CTCAG 1 cut(s) 218
BspMAI CTGCAG 2 cut(s) 151, 169
BspMI ACCTGC 2 cut(s) 140, 169
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 2 cut(s) 128, 566
BssECI CCNNGG 4 cut(s) 221, 306, 422, 696
BssMI GATC 1 cut(s) 495
BssSI CACGAG 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 84
Bst2UI CCWGG 4 cut(s) 222, 423, 635, 676
Bst6I CTCTTC 1 cut(s) 546
BstAPI GCANNNNNTGC 1 cut(s) 667
BstBAI YACGTR 2 cut(s) 333, 753
BstC8I GCNNGC 4 cut(s) 147, 360, 672, 703
BstDEI CTNAG 2 cut(s) 205, 387
BstF5I GGATG 1 cut(s) 601
BstKTI GATC 1 cut(s) 498
BstMBI GATC 1 cut(s) 495
BstMWI GCNNNNNNNGC 1 cut(s) 667
BstNI CCWGG 4 cut(s) 222, 423, 635, 676
BstSCI CCNGG 5 cut(s) 220, 421, 633, 674, 696
BstSFI CTRYAG 2 cut(s) 147, 165
BstSLI GKGCMC 1 cut(s) 672
BstSNI TACGTA 1 cut(s) 753
BstV1I GCAGC 3 cut(s) 151, 367, 736
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 495
BstXI CCANNNNNNTGG 1 cut(s) 59
BstYI RGATCY 1 cut(s) 495
Bsu36I CCTNAGG 1 cut(s) 387
BsuRI GGCC 2 cut(s) 145, 305
BtsCI GGATG 1 cut(s) 601
BveI ACCTGC 2 cut(s) 140, 169
Cac8I GCNNGC 4 cut(s) 147, 360, 672, 703
Cfr13I GGNCC 1 cut(s) 143
CsiI ACCWGGT 1 cut(s) 633
Csp6I GTAC 4 cut(s) 251, 350, 718, 750
CviAII CATG 5 cut(s) 186, 523, 658, 662, 728
CviQI GTAC 4 cut(s) 251, 350, 718, 750
DdeI CTNAG 2 cut(s) 205, 387
DpnI GATC 1 cut(s) 497
DpnII GATC 1 cut(s) 495
DraIII CACNNNGTG 1 cut(s) 637
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Ecl136II GAGCTC 1 cut(s) 403
Eco105I TACGTA 1 cut(s) 753
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 428
Eco72I CACGTG 1 cut(s) 333
Eco81I CCTNAGG 1 cut(s) 387
EcoICRI GAGCTC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 143
EcoRII CCWGG 4 cut(s) 220, 421, 633, 674
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 5 cut(s) 189, 526, 661, 665, 731
FaqI GGGAC 1 cut(s) 379
FatI CATG 5 cut(s) 185, 522, 657, 661, 727
Fnu4HI GCNGC 3 cut(s) 165, 356, 725
FokI GGATG 1 cut(s) 588
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 3 cut(s) 165, 356, 725
GluI GCNGC 3 cut(s) 165, 356, 725
GsaI CCCAGC 1 cut(s) 366
HaeIII GGCC 2 cut(s) 145, 305
HapII CCGG 1 cut(s) 698
Hin1II CATG 5 cut(s) 189, 526, 661, 665, 731
HindIII AAGCTT 1 cut(s) 291
HpaII CCGG 1 cut(s) 698
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 4 cut(s) 559, 670, 718, 750
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 4 cut(s) 559, 670, 718, 750
HpyAV CCTTC 1 cut(s) 452
HpyCH4IV ACGT 2 cut(s) 332, 752
HpyCH4V TGCA 7 cut(s) 47, 149, 167, 178, 587, 661, 670
HpyF10VI GCNNNNNNNGC 1 cut(s) 667
HpyF3I CTNAG 2 cut(s) 205, 387
HpySE526I ACGT 2 cut(s) 332, 752
Hsp92II CATG 5 cut(s) 189, 526, 661, 665, 731
Kzo9I GATC 1 cut(s) 495
LmnI GCTCC 1 cut(s) 408
Lsp1109I GCAGC 3 cut(s) 151, 367, 736
LweI GCATC 2 cut(s) 34, 575
MabI ACCWGGT 1 cut(s) 633
MaeII ACGT 2 cut(s) 332, 752
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 497
MboI GATC 1 cut(s) 495
MboII GAAGA 7 cut(s) 53, 238, 336, 404, 407, 505, 563
MflI RGATCY 1 cut(s) 495
MhlI GDGCHC 2 cut(s) 405, 672
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 2 cut(s) 589, 619
MluNI TGGCCA 1 cut(s) 305
MnlI CCTC 8 cut(s) 27, 80, 241, 259, 479, 547, 609, 615
Mox20I TGGCCA 1 cut(s) 305
Mph1103I ATGCAT 1 cut(s) 663
MscI TGGCCA 1 cut(s) 305
MseI TTAA 2 cut(s) 93, 215
MslI CAYNNNNRTG 1 cut(s) 521
Msp20I TGGCCA 1 cut(s) 305
MspI CCGG 1 cut(s) 698
MspR9I CCNGG 5 cut(s) 222, 423, 635, 676, 698
MvaI CCWGG 4 cut(s) 222, 423, 635, 676
MwoI GCNNNNNNNGC 1 cut(s) 667
NciI CCSGG 1 cut(s) 698
NdeII GATC 1 cut(s) 495
NlaIII CATG 5 cut(s) 189, 526, 661, 665, 731
NsiI ATGCAT 1 cut(s) 663
PaqCI CACCTGC 1 cut(s) 140
PkrI GCNGC 3 cut(s) 166, 357, 726
PmaCI CACGTG 1 cut(s) 333
PmlI CACGTG 1 cut(s) 333
Ppu21I YACGTR 2 cut(s) 333, 753
PsiI TTATAA 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 405
Psp6I CCWGG 4 cut(s) 220, 421, 633, 674
PspCI CACGTG 1 cut(s) 333
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 4 cut(s) 220, 421, 633, 674
PspPI GGNCC 1 cut(s) 143
PstI CTGCAG 2 cut(s) 151, 169
PsuI RGATCY 1 cut(s) 495
RsaI GTAC 4 cut(s) 252, 351, 719, 751
RsaNI GTAC 4 cut(s) 251, 350, 718, 750
RseI CAYNNNNRTG 1 cut(s) 521
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 2 cut(s) 93, 215
SatI GCNGC 3 cut(s) 165, 356, 725
Sau3AI GATC 1 cut(s) 495
Sau96I GGNCC 1 cut(s) 143
SbfI CCTGCAGG 1 cut(s) 151
ScrFI CCNGG 5 cut(s) 222, 423, 635, 676, 698
SdaI CCTGCAGG 1 cut(s) 151
SduI GDGCHC 2 cut(s) 405, 672
SexAI ACCWGGT 1 cut(s) 633
SfaNI GCATC 2 cut(s) 34, 575
SfcI CTRYAG 2 cut(s) 147, 165
SmiMI CAYNNNNRTG 1 cut(s) 521
SnaBI TACGTA 1 cut(s) 753
Sse8387I CCTGCAGG 1 cut(s) 151
Sse9I AATT 2 cut(s) 589, 619
SsiI CCGC 1 cut(s) 406
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 5 cut(s) 220, 421, 633, 674, 696
StyI CCWWGG 1 cut(s) 306
TaiI ACGT 2 cut(s) 335, 755
TaqI TCGA 2 cut(s) 156, 513
TaqII GACCGA 1 cut(s) 440
TasI AATT 2 cut(s) 589, 619
TatI WGTACW 1 cut(s) 349
Tru1I TTAA 2 cut(s) 93, 215
Tru9I TTAA 2 cut(s) 93, 215
TseI GCWGC 3 cut(s) 164, 355, 724
TspDTI ATGAA 6 cut(s) 54, 129, 174, 474, 643, 662
TspGWI ACGGA 1 cut(s) 563
VneI GTGCAC 1 cut(s) 668
XapI RAATTY 1 cut(s) 589
Zsp2I ATGCAT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.