Rh5BG144800

Protein PHLOEM PROTEIN 2-LIKE A9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003915
Physical Location & Seq
Forward (+)
14990837 .. 14991731
895 bp
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UTR
Exon/CDS
Intron
Rh5BG144800.1

Sequence Viewer

Length: 279 bp
ATGGCTATGACTAAACCTCATTGGCAAGCAGAGAAAGAAGAAATCATAAAGCAGGGAGATGACTACCTTATCAAACCACGAGGACTTAATATTGTATGGGGCAATGATGAACGGTACTGGAAAATACCAGCCAGAGGGACTGATGGAGCTGCAGAGCTGGTACAGGTCTCGTGGCTGGAAGTAACAGGCTCAGTTGAGTTGAAAGCCGGGAAGGGGTACGAACTGACCTTCGATGTGGGACTGGCAGAAGATGCATTTGGTTGGAAAGACATATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

92

Amino Acids

10.38

Weight (kDa)

4.77

Isoelectric Point (pI)

10.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 22 - 90 9.7e-14 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 116, 162, 218
AfiI CCNNNNNNNGG 2 cut(s) 134, 213
AgsI TTSAA 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 2 cut(s) 149, 157
AluI AGCT 2 cut(s) 149, 157
Alw26I GTCTC 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 208
BauI CACGAG 2 cut(s) 78, 169
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 137
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 208
BsaI GGTCTC 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 213
Bse1I ACTGG 2 cut(s) 122, 246
Bse3DI GCAATG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 134, 213
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 122, 246
BseXI GCAGC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 2 cut(s) 151, 252
BslI CCNNNNNNNGG 2 cut(s) 134, 213
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 2 cut(s) 151, 252
Bso31I GGTCTC 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 203
BspMAI CTGCAG 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 109
BsrI ACTGG 2 cut(s) 122, 246
BssSI CACGAG 2 cut(s) 78, 169
Bst2BI CACGAG 2 cut(s) 78, 169
Bst4CI ACNGT 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 27
Csp6I GTAC 3 cut(s) 115, 161, 217
CviJI RGCY 7 cut(s) 5, 131, 149, 157, 175, 189, 206
CviKI_1 RGCY 7 cut(s) 5, 131, 149, 157, 175, 189, 206
CviQI GTAC 3 cut(s) 115, 161, 217
DdeI CTNAG 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 256
FaiI YATR 5 cut(s) 8, 47, 97, 272, 274
FaqI GGGAC 2 cut(s) 151, 252
FauNDI CATATG 1 cut(s) 272
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
HapII CCGG 1 cut(s) 207
HpaII CCGG 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 205, 238
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 152, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 190
LmnI GCTCC 1 cut(s) 146
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 181
MboII GAAGA 2 cut(s) 50, 260
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 3 cut(s) 27, 74, 128
Mph1103I ATGCAT 1 cut(s) 256
MseI TTAA 1 cut(s) 87
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 208
NdeI CATATG 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 256
PkrI GCNGC 1 cut(s) 151
PstI CTGCAG 1 cut(s) 154
RsaI GTAC 3 cut(s) 116, 162, 218
RsaNI GTAC 3 cut(s) 115, 161, 217
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 208
SetI ASST 6 cut(s) 19, 69, 151, 159, 168, 230
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 150
SspI AATATT 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 231
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.