Rh5BG144900

Protein PHLOEM PROTEIN 2-LIKE A9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003915
Physical Location & Seq
Forward (+)
15021977 .. 15024149
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG144900.1

Sequence Viewer

Length: 507 bp
ATGTCTATGACTAAACCTCATTTCCAAGCAGAGAAAGATGCAGAGACAGTCCAAAAGATTGGGGATGGCTACATTATCAAACCACGAGGACTTAACATTGTATGGGGCAATGACGAACGCTACTGGAAAATACCAGCCAAAGGGGTCGATGATGCTGCAGAGCTGGTGCAGGTTTCATGGCTGGAAGTAACAGGCTCAGTTGGTTTAACAGCTGGGATGACGTATAAACTGAACTTTGATGTAGAACTGCTACCAGAGGCATTTGGCTGGAAAGATATACAAGCTTTCTTGATGGCCAAGGTAGGGAAAAAGGGAAGGTACAGCTGGAAAAGGGTTCAACTGCAGCCGGGGAGAGACAAGATTCCTAAGGAAAATGATGACCTCACCATTCAAGTTCCAACTGGGCTCACTGACACCACCCTTCAGTTCGGTCTGTATGAAGTGTGGAGTGGGAAATGGAAAGGAGGCTTGAAGATTTATAATGCGAAAGTAACTGCGATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

168

Amino Acids

18.89

Weight (kDa)

8.96

Isoelectric Point (pI)

8.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 24 - 162 7.2e-21 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
Acc36I ACCTGC 1 cut(s) 160
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 407
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 140, 303
AgsI TTSAA 3 cut(s) 338, 392, 472
AluBI AGCT 4 cut(s) 163, 212, 284, 324
AluI AGCT 4 cut(s) 163, 212, 284, 324
Alw26I GTCTC 2 cut(s) 38, 348
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 2 cut(s) 155, 343
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 376
AxyI CCTNAGG 1 cut(s) 366
BalI TGGCCA 1 cut(s) 296
BanII GRGCYC 1 cut(s) 408
BauI CACGAG 1 cut(s) 84
BbvI GCAGC 2 cut(s) 142, 355
BccI CCATC 2 cut(s) 59, 286
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 38, 348
BfmI CTRYAG 2 cut(s) 156, 341
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 2 cut(s) 156, 344
BlsI GCNGC 2 cut(s) 157, 345
Bme1390I CCNGG 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 348
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 2 cut(s) 28, 142
BmuI ACTGGG 1 cut(s) 411
BpuMI CCSGG 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 297, 347
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 303
Bse1I ACTGG 2 cut(s) 128, 406
Bse21I CCTNAGG 1 cut(s) 366
Bse3DI GCAATG 1 cut(s) 115
BseDI CCNNGG 2 cut(s) 297, 347
BseGI GGATG 2 cut(s) 70, 222
BseLI CCNNNNNNNGG 2 cut(s) 140, 303
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 2 cut(s) 128, 406
BseXI GCAGC 2 cut(s) 142, 355
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 188
BshFI GGCC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 140, 303
BsmAI GTCTC 2 cut(s) 38, 348
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 408
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 209
BspMAI CTGCAG 2 cut(s) 160, 345
BspMI ACCTGC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 2 cut(s) 128, 406
BssECI CCNNGG 2 cut(s) 297, 347
BssSI CACGAG 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 196, 366
BstF5I GGATG 2 cut(s) 70, 222
BstMAI GTCTC 2 cut(s) 38, 348
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 2 cut(s) 156, 341
BstV1I GCAGC 2 cut(s) 142, 355
BstXI CCANNNNNNTGG 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 366
BsuRI GGCC 1 cut(s) 296
BtsCI GGATG 2 cut(s) 70, 222
BtsIMutI CAGTG 1 cut(s) 408
BveI ACCTGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 319
CviAII CATG 1 cut(s) 177
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 2 cut(s) 196, 366
EaeI YGGCCR 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 407
Eco81I CCTNAGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 180
FaiI YATR 7 cut(s) 8, 103, 178, 225, 278, 438, 480
FatI CATG 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 156, 344
FokI GGATG 2 cut(s) 77, 229
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 2 cut(s) 156, 344
GluI GCNGC 2 cut(s) 156, 344
GsaI CCCAGC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 296
HapII CCGG 1 cut(s) 347
Hin1II CATG 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 2 cut(s) 361, 499
HpaII CCGG 1 cut(s) 347
HphI GGTGA 1 cut(s) 376
Hpy188III TCNNGA 1 cut(s) 289
HpyAV CCTTC 2 cut(s) 309, 431
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 4 cut(s) 41, 158, 169, 343
HpyF3I CTNAG 2 cut(s) 196, 366
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 1 cut(s) 180
Lsp1109I GCAGC 2 cut(s) 142, 355
LweI GCATC 2 cut(s) 28, 142
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 2 cut(s) 187, 490
MboII GAAGA 1 cut(s) 484
MhlI GDGCHC 1 cut(s) 408
MlsI TGGCCA 1 cut(s) 296
MluNI TGGCCA 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 5 cut(s) 27, 80, 250, 392, 458
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 2 cut(s) 93, 206
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 2 cut(s) 212, 324
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 348
NciI CCSGG 1 cut(s) 348
NlaIII CATG 1 cut(s) 180
PfeI GAWTC 2 cut(s) 361, 499
PkrI GCNGC 2 cut(s) 157, 345
PsiI TTATAA 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 212
PstI CTGCAG 2 cut(s) 160, 345
PvuII CAGCTG 2 cut(s) 212, 324
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 2 cut(s) 93, 206
SatI GCNGC 2 cut(s) 156, 344
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 2 cut(s) 28, 142
SfcI CTRYAG 2 cut(s) 156, 341
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 147
TaqII GACCGA 1 cut(s) 419
TfiI GAWTC 2 cut(s) 361, 499
Tru1I TTAA 2 cut(s) 93, 206
Tru9I TTAA 2 cut(s) 93, 206
TscAI CASTG 1 cut(s) 415
TseI GCWGC 2 cut(s) 155, 343
TspDTI ATGAA 2 cut(s) 165, 453
TspRI CASTG 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.