Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003915

Physical Location & Seq

Genomic Coordinates Forward (+)

5867607 .. 5869094

Gene Structure 1488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G110400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCTATGACTAAGCCTCATTTCCAAGCAGAGCAAAATGCAATAATCGAGCAGAAGCAAGGTCGCCATAGCTACACCATCAAACCACGAGGGCTTACCATTGTATGGGGAAATGATGAGCGCTATTGGAAATTACCAAAGATAGAGAGTGATTATACGAACTCGAATGAGCCCGTGGAGCTGCTTCAGGTTTCTTGGCTGGAAGTGACGGCCACAGTTGGCTTAAATCCCGGGAGGGAGTATGAAATTAGCTTTCAAGTAGAACTGGCACCAGATGCATTTGGTTGGAGAGACATACAAGCTTTCTTGATGGCCAAGGTAGGGAAAAAGGGAAAGTACACATGGACAAAAGTTAAACTAGCGCAGGATTCAAATGTAGGCAGATTCACAATTCCTGATACAAACGGAAACGGCCGGCCATTTAGAATTAAAAGTCTTGACATGAAGGATGCCGACAACACGCTTCATTTTGGTCTGTATGAAGTCTGGAGTGGAAAATGGAAGGGAGGCTTGAAAATTTATGAAGCAAATGTCGAAGATGTAACTGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

185

Amino Acids

21.03

Weight (kDa)

8.65

Isoelectric Point (pI)

8.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10155 AT1G31200
fragaria_vesca	FvH4_3g12160 FvH4_3g12160
malus_domestica	MD05G1254300.v1.1 MD10G1234200.v1.1 MD10G1234400.v1.1
prunus_persica	Prupe.4G110400_v2.0.a1 Prupe.4G110400_v2.0.a1
pyrus_communis	pycom05g23220
rosa_chinensis	RchiOBHm_Chr5g0019901 RchiOBHm_Chr5g0019921 RchiOBHm_Chr5g0019931
rosa_laevigata	RLG00000032483 RLG00000032485 RLG00000032487
rosa_multiflora	Rmu_sc0000344.1_g000007 Rmu_sc0002250.1_g000021
rosa_roxburghii	Rroxscaffold_1G00058250 Rroxscaffold_1G00058260 Rroxscaffold_1G00058270
rosa_rugosa	Rorug05G0055300 Rorug05G0055400
rosa_samantha	Rh5AG145000 Rh5AG145400 Rh5BG144800 Rh5BG144900 Rh5CG156100 Rh5CG156300 Rh5CG156400 Rh5DG144000 Rh5DG144200
rosa_wichuraiana	Rw5G012830 Rw5G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	105
AcoI	YGGCCR	4 cut(s)	210, 312, 412, 416
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	1 cut(s)	338
AfeI	AGCGCT	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	105, 321
AgsI	TTSAA	3 cut(s)	257, 372, 514
AluBI	AGCT	4 cut(s)	72, 181, 252, 302
AluI	AGCT	4 cut(s)	72, 181, 252, 302
Alw26I	GTCTC	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	230
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	4 cut(s)	210, 312, 412, 416
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	516
AspLEI	GCGC	2 cut(s)	123, 364
AsuC2I	CCSGG	2 cut(s)	231, 232
AvaI	CYCGRG	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	174
BauI	CACGAG	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	2 cut(s)	86, 304
BceAI	ACGGC	2 cut(s)	225, 427
BcnI	CCSGG	2 cut(s)	231, 232
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	359
BfoI	RGCGCY	1 cut(s)	124
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
Bme1390I	CCNGG	2 cut(s)	231, 232
BmeT110I	CYCGRG	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	2 cut(s)	231, 232
BmsI	GCATC	2 cut(s)	265, 439
BpmI	CTGGAG	1 cut(s)	508
BpuMI	CCSGG	2 cut(s)	231, 232
BsaJI	CCNNGG	3 cut(s)	174, 230, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 321
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	2 cut(s)	270, 550
BseDI	CCNNGG	3 cut(s)	174, 230, 315
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	2 cut(s)	105, 321
BseNI	ACTGG	2 cut(s)	270, 550
BseX3I	CGGCCG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	4 cut(s)	212, 314, 414, 418
BshNI	GGYRCC	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	231, 415
BslI	CCNNNNNNNGG	2 cut(s)	105, 321
BsmAI	GTCTC	1 cut(s)	285
BsnI	GGCC	4 cut(s)	212, 314, 414, 418
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	174
BspANI	GGCC	4 cut(s)	212, 314, 414, 418
BspLI	GGNNCC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	270, 550
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	3 cut(s)	174, 230, 315
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	454
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	123, 364
BstMAI	GTCTC	1 cut(s)	285
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 275
BstSCI	CCNGG	2 cut(s)	229, 230
BstV1I	GCAGC	1 cut(s)	168
BstZI	CGGCCG	1 cut(s)	412
BsuRI	GGCC	4 cut(s)	212, 314, 414, 418
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	416
CfoI	GCGC	2 cut(s)	123, 364
Cfr10I	RCCGGY	1 cut(s)	414
Cfr9I	CCCGGG	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	2 cut(s)	342, 442
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	12
EaeI	YGGCCR	4 cut(s)	210, 312, 412, 416
EagI	CGGCCG	1 cut(s)	412
EclXI	CGGCCG	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	174
Eco47III	AGCGCT	1 cut(s)	122
Eco52I	CGGCCG	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	315
EcoT22I	ATGCAT	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	345, 445
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FatI	CATG	2 cut(s)	341, 441
Fnu4HI	GCNGC	1 cut(s)	182
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	174
FseI	GGCCGGCC	1 cut(s)	418
Fsp4HI	GCNGC	1 cut(s)	182
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	2 cut(s)	122, 363
GluI	GCNGC	1 cut(s)	182
GsuI	CTGGAG	1 cut(s)	508
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	4 cut(s)	212, 314, 414, 418
HapII	CCGG	2 cut(s)	231, 415
HhaI	GCGC	2 cut(s)	123, 364
Hin1II	CATG	2 cut(s)	345, 445
Hin6I	GCGC	2 cut(s)	121, 362
HinP1I	GCGC	2 cut(s)	121, 362
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	2 cut(s)	368, 384
HpaII	CCGG	2 cut(s)	231, 415
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188III	TCNNGA	4 cut(s)	307, 395, 437, 487
Hpy8I	GTNNAC	1 cut(s)	339
HpyAV	CCTTC	2 cut(s)	439, 496
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	41, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 275
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	345, 445
HspAI	GCGC	2 cut(s)	121, 362
KroI	GCCGGC	1 cut(s)	414
KroNI	GCCGGC	1 cut(s)	416
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	2 cut(s)	265, 439
MaeI	CTAG	1 cut(s)	359
MaeIII	GTNAC	2 cut(s)	205, 541
MboII	GAAGA	1 cut(s)	548
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	5 cut(s)	131, 246, 390, 426, 516
MluNI	TGGCCA	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	4 cut(s)	27, 83, 228, 500
Mox20I	TGGCCA	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	280
MroNI	GCCGGC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	3 cut(s)	224, 354, 429
Msp20I	TGGCCA	1 cut(s)	314
MspI	CCGG	2 cut(s)	231, 415
MspR9I	CCNGG	2 cut(s)	231, 232
MwoI	GCNNNNNNNGC	2 cut(s)	178, 275
NaeI	GCCGGC	1 cut(s)	416
NciI	CCSGG	2 cut(s)	231, 232
NgoMIV	GCCGGC	1 cut(s)	414
NlaIII	CATG	2 cut(s)	345, 445
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	280
PdiI	GCCGGC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	368, 384
PflMI	CCANNNNNTGG	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	270
RigI	GGCCGGCC	1 cut(s)	418
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	3 cut(s)	224, 354, 429
SatI	GCNGC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	231, 232
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	7 cut(s)	64, 74, 183, 192, 254, 304, 321
SfaNI	GCATC	2 cut(s)	265, 439
SmaI	CCCGGG	1 cut(s)	232
Sse9I	AATT	5 cut(s)	131, 246, 390, 426, 516
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	229, 230
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	3 cut(s)	48, 164, 534
TasI	AATT	5 cut(s)	131, 246, 390, 426, 516
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	2 cut(s)	368, 384
Tru1I	TTAA	3 cut(s)	224, 354, 429
Tru9I	TTAA	3 cut(s)	224, 354, 429
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	5 cut(s)	258, 455, 458, 495, 537
TspGWI	ACGGA	1 cut(s)	420
TspMI	CCCGGG	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	105
XapI	RAATTY	1 cut(s)	516
XmaI	CCCGGG	1 cut(s)	230
XspI	CTAG	1 cut(s)	359
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.