FvH4_3g12160

Protein PHLOEM PROTEIN 2-LIKE A9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003915
Physical Location & Seq
Forward (+)
7205122 .. 7207422
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12160.t1

Sequence Viewer

Length: 528 bp
ATGGCTATGACCAAACCCCATTACGCAGCAGATAAGAACAGTGTAATCAAAGATGAGCAGGGAGGTACCTGCGTTATCAAACCACGAGGACTGAATATTGTATGGGGCAATGATGAACGCTACTGGAAAATACCTAAAGAGACTGATGGTGATAAACCTGTAGAGCTGTTACAGGTCTCGTGGCTGGAAGTAACAGGCTCAGTTGATGGGTTGAGACCCGGGAAGTATAAACTGACCTTTGATGTGAAACTGACAGCAGATGCATTTGGTTGGAAAGACATACAGGTGTTCTTGATGGCAAAGGTAGGGAAGAAGGGAAAATACAAATGGGCAAGAGTCAAACTCGATCAGGGTCTGAATACCGATAAAGTTTCGATTCCTGCTGATACACAGAAGCTAAAGATTGAAGTTCCAAATGACACAACAGACAACACCCTTCATTTTGGTCTGTATGAAGTGTGGAGTGGGAAATGGAAAGGAGGCTTGGAGATTTATAATGCCAAAGTAACTGCCATTACTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

176

Amino Acids

19.66

Weight (kDa)

8.98

Isoelectric Point (pI)

8.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 24 - 166 2.4e-20 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
Acc36I ACCTGC 1 cut(s) 77
Acc65I GGTACC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 65
AfaI GTAC 1 cut(s) 67
AgsI TTSAA 1 cut(s) 407
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AluBI AGCT 3 cut(s) 166, 397, 524
AluI AGCT 3 cut(s) 166, 397, 524
Alw26I GTCTC 3 cut(s) 134, 181, 208
AlwNI CAGNNNCTG 1 cut(s) 355
Ama87I CYCGRG 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 65
AsuC2I CCSGG 2 cut(s) 219, 220
AsuHPI GGTGA 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 218
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BanI GGYRCC 1 cut(s) 65
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
BauI CACGAG 2 cut(s) 84, 178
BbvI GCAGC 1 cut(s) 38
BccI CCATC 3 cut(s) 140, 200, 289
BcnI CCSGG 2 cut(s) 219, 220
BcoDI GTCTC 3 cut(s) 134, 181, 208
BfmI CTRYAG 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 77
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 219, 220
BmeT110I CYCGRG 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 2 cut(s) 219, 220
BmsI GCATC 1 cut(s) 250
BplI GAGNNNNNCTC 2 cut(s) 327, 359
BpuMI CCSGG 2 cut(s) 219, 220
BsaI GGTCTC 2 cut(s) 181, 208
BsaJI CCNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 218
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 1 cut(s) 219
BsmAI GTCTC 3 cut(s) 134, 181, 208
Bso31I GGTCTC 2 cut(s) 181, 208
BsoBI CYCGRG 1 cut(s) 218
Bsp143I GATC 1 cut(s) 346
BspCNI CTCAG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 2 cut(s) 181, 208
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 1 cut(s) 346
BssSI CACGAG 2 cut(s) 84, 178
Bst2BI CACGAG 2 cut(s) 84, 178
Bst4CI ACNGT 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 199
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 3 cut(s) 134, 181, 208
BstMBI GATC 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 217, 218
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 46
BveI ACCTGC 1 cut(s) 77
CaiI CAGNNNCTG 1 cut(s) 355
Cfr9I CCCGGG 1 cut(s) 218
Csp6I GTAC 1 cut(s) 66
CviJI RGCY 7 cut(s) 5, 166, 184, 198, 397, 483, 524
CviKI_1 RGCY 7 cut(s) 5, 166, 184, 198, 397, 483, 524
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 1 cut(s) 199
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
Eco31I GGTCTC 2 cut(s) 181, 208
Eco88I CYCGRG 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 265
FaiI YATR 6 cut(s) 8, 103, 228, 281, 453, 495
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
HapII CCGG 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 522
HinfI GANTC 2 cut(s) 336, 376
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 1 cut(s) 292
HpyAV CCTTC 2 cut(s) 307, 446
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 199
KpnI GGTACC 1 cut(s) 69
Kzo9I GATC 1 cut(s) 346
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 1 cut(s) 250
MaeIII GTNAC 3 cut(s) 168, 190, 505
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 1 cut(s) 322
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 3 cut(s) 56, 80, 473
Mph1103I ATGCAT 1 cut(s) 265
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 2 cut(s) 219, 220
NciI CCSGG 2 cut(s) 219, 220
NdeII GATC 1 cut(s) 346
NlaIV GGNNCC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 265
PfeI GAWTC 1 cut(s) 376
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
PsiI TTATAA 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 355
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 284
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 346
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 2 cut(s) 219, 220
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 159
SmaI CCCGGG 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 284
SspI AATATT 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 217, 218
TaaI ACNGT 1 cut(s) 41
TaqI TCGA 2 cut(s) 345, 374
TfiI GAWTC 1 cut(s) 376
TscAI CASTG 1 cut(s) 46
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 3 cut(s) 129, 428, 468
TspMI CCCGGG 1 cut(s) 218
TspRI CASTG 1 cut(s) 46
XmaI CCCGGG 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.