RchiOBHm_Chr5g0019921

Protein PHLOEM PROTEIN 2-LIKE A9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003915
Physical Location & Seq
Forward (+)
14312036 .. 14313439
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30004

Sequence Viewer

Length: 525 bp
ATGGCTATGACTAAACCTCATTGGCAAGCAGAGAAAGAAGAAATCATAAAGCAGGGAGATAACTACCATATCAAACCACGAGGACTTAATATTGTATGGGGCAATGATGAACGCTACTGGAAAATACCAGCCAAAAGGACTGAGGATCCTGCAGAGCCTCCTGCAGAGCTGGTACAGGTCTCATGGCTGGAAGTAACAGGCTCAGTTGATGAGTTGAAACCCGGGAAGGGGTATGATCTGACCTTCGAGGTGGGGCTGGCAGGAGATGCATTTGGTTGGAAAGACATACAAGTGTTCTTGATGGCAAAGGTAGGGAAAAAGGGAAGGTACAAATGGACAAGAGTTAAACTCGATCAGGATAGGAATAACGAGAGAGTTACAATTCCTGATAACCAGAAGCTTAGCATTGATGTTCCAGCTGATACAAGGGACACCACCCTTCATTTTGGTCTGTATGAAGTGTGGAGTGGGAAATGGAAAGGAGGCTTGAAGATTTATAATGCGAAAGTAACTGCCACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

174

Amino Acids

19.89

Weight (kDa)

8.63

Isoelectric Point (pI)

14.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 21 - 168 9.3e-23 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 498
AclWI GGATC 2 cut(s) 140, 153
AfaI GTAC 2 cut(s) 174, 329
AfiI CCNNNNNNNGG 2 cut(s) 227, 228
AgsI TTSAA 2 cut(s) 217, 490
AluBI AGCT 3 cut(s) 169, 400, 419
AluI AGCT 3 cut(s) 169, 400, 419
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 2 cut(s) 140, 153
Ama87I CYCGRG 1 cut(s) 221
AsuC2I CCSGG 2 cut(s) 222, 223
AvaI CYCGRG 1 cut(s) 221
BamHI GGATCC 1 cut(s) 145
BauI CACGAG 1 cut(s) 78
BccI CCATC 1 cut(s) 295
BcnI CCSGG 2 cut(s) 222, 223
BcoDI GTCTC 1 cut(s) 184
BfmI CTRYAG 2 cut(s) 150, 162
BlpI GCTNAGC 1 cut(s) 401
Bme1390I CCNGG 2 cut(s) 222, 223
BmeT110I CYCGRG 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 222, 223
BmsI GCATC 1 cut(s) 256
BplI GAGNNNNNCTC 2 cut(s) 333, 365
Bpu1102I GCTNAGC 1 cut(s) 401
BpuMI CCSGG 2 cut(s) 222, 223
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 221
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 228
Bse1I ACTGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 221
BseLI CCNNNNNNNGG 2 cut(s) 227, 228
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 132, 216
BseNI ACTGG 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 2 cut(s) 227, 228
BsmAI GTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 443
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 221
Bsp143I GATC 3 cut(s) 145, 235, 352
Bsp1720I GCTNAGC 1 cut(s) 401
BspCNI CTCAG 2 cut(s) 133, 215
BspLI GGNNCC 1 cut(s) 147
BspMAI CTGCAG 2 cut(s) 154, 166
BspPI GGATC 2 cut(s) 140, 153
BspTNI GGTCTC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 109
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 3 cut(s) 145, 235, 352
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 27, 258
BstDEI CTNAG 3 cut(s) 141, 202, 401
BstKTI GATC 3 cut(s) 148, 238, 355
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 3 cut(s) 145, 235, 352
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 220, 221
BstSFI CTRYAG 2 cut(s) 150, 162
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 1 cut(s) 516
Cac8I GCNNGC 2 cut(s) 27, 258
Cfr9I CCCGGG 1 cut(s) 221
Csp6I GTAC 2 cut(s) 173, 328
CviAII CATG 1 cut(s) 183
CviQI GTAC 2 cut(s) 173, 328
DdeI CTNAG 3 cut(s) 141, 202, 401
DpnI GATC 3 cut(s) 147, 237, 354
DpnII GATC 3 cut(s) 145, 235, 352
Eco31I GGTCTC 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 271
FaeI CATG 1 cut(s) 186
FaiI YATR 9 cut(s) 8, 47, 69, 97, 184, 234, 287, 456, 498
FaqI GGGAC 1 cut(s) 443
FatI CATG 1 cut(s) 182
HapII CCGG 1 cut(s) 222
Hin1II CATG 1 cut(s) 186
HindIII AAGCTT 1 cut(s) 398
HpaII CCGG 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 3 cut(s) 298, 356, 386
HpyAV CCTTC 4 cut(s) 220, 253, 318, 449
HpyCH4V TGCA 3 cut(s) 152, 164, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 3 cut(s) 141, 202, 401
Hsp92II CATG 1 cut(s) 186
Kzo9I GATC 3 cut(s) 145, 235, 352
LweI GCATC 1 cut(s) 256
MaeIII GTNAC 3 cut(s) 193, 376, 508
MalI GATC 3 cut(s) 147, 237, 354
MboI GATC 3 cut(s) 145, 235, 352
MboII GAAGA 2 cut(s) 50, 502
MflI RGATCY 1 cut(s) 145
MluCI AATT 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 6 cut(s) 27, 74, 136, 168, 241, 476
Mph1103I ATGCAT 1 cut(s) 271
MseI TTAA 2 cut(s) 87, 345
MslI CAYNNNNRTG 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 222, 223
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 2 cut(s) 222, 223
NdeII GATC 3 cut(s) 145, 235, 352
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 1 cut(s) 147
NsiI ATGCAT 1 cut(s) 271
PsiI TTATAA 1 cut(s) 498
PspN4I GGNNCC 1 cut(s) 147
PstI CTGCAG 2 cut(s) 154, 166
PsuI RGATCY 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 2 cut(s) 174, 329
RsaNI GTAC 2 cut(s) 173, 328
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 2 cut(s) 87, 345
Sau3AI GATC 3 cut(s) 145, 235, 352
ScrFI CCNGG 2 cut(s) 222, 223
SetI ASST 9 cut(s) 19, 171, 180, 245, 252, 312, 329, 402, 421
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 2 cut(s) 150, 162
SmaI CCCGGG 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 1 cut(s) 381
SspI AATATT 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 220, 221
TaqI TCGA 2 cut(s) 246, 351
TasI AATT 1 cut(s) 381
Tru1I TTAA 2 cut(s) 87, 345
Tru9I TTAA 2 cut(s) 87, 345
TscAI CASTG 1 cut(s) 523
TspDTI ATGAA 3 cut(s) 123, 431, 471
TspMI CCCGGG 1 cut(s) 221
TspRI CASTG 1 cut(s) 523
XmaI CCCGGG 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.