Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002250.1

Orthogroup ID

OG0003915

Physical Location & Seq

Genomic Coordinates Reverse (-)

94218 .. 95376

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002250.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgactaaacctcatttccaagcagtgaaagatgaacagacagtcctgccaaagactggaggatcagcgggctatactatcaaaccacaaggacttaacatagtatggggcaatgatgaacgctactggaaaatacctgccaaaggcaccaatgaggctgcagagctggtgcaggtttcatggcttgaagtaacaggctcagttggtttaatagctgggaagaagtataaactgaactttgaggtagaactgctaccagaggcatttggctggaaagatatacaagctttcttgatggccaaggtagggaaaaagggaaggtacaactggaaaagggttcaactgcagccggggacggaaaaaaccttgattcctgagggagatacgctcaccattgaagttccaactgggcaaaatgtcgacaccacccttcagttcggtctgtatgaagtgtggagtgggaaatggaaaggaggcttgaagatttatgatgcgcaagtaactgagatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2

Protein Analysis

170

Amino Acids

18.99

Weight (kDa)

8.65

Isoelectric Point (pI)

15.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10155 AT1G31200
fragaria_vesca	FvH4_3g12160 FvH4_3g12160
malus_domestica	MD05G1254300.v1.1 MD10G1234200.v1.1 MD10G1234400.v1.1
prunus_persica	Prupe.4G110400_v2.0.a1 Prupe.4G110400_v2.0.a1
pyrus_communis	pycom05g23220
rosa_chinensis	RchiOBHm_Chr5g0019901 RchiOBHm_Chr5g0019921 RchiOBHm_Chr5g0019931
rosa_laevigata	RLG00000032483 RLG00000032485 RLG00000032487
rosa_multiflora	Rmu_sc0000344.1_g000007 Rmu_sc0002250.1_g000021
rosa_roxburghii	Rroxscaffold_1G00058250 Rroxscaffold_1G00058260 Rroxscaffold_1G00058270
rosa_rugosa	Rorug05G0055300 Rorug05G0055400
rosa_samantha	Rh5AG145000 Rh5AG145400 Rh5BG144800 Rh5BG144900 Rh5CG156100 Rh5CG156300 Rh5CG156400 Rh5DG144000 Rh5DG144200
rosa_wichuraiana	Rw5G012830 Rw5G012850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	495
Acc36I	ACCTGC	2 cut(s)	145, 163
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	420
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	56, 143, 306
AgsI	TTSAA	4 cut(s)	188, 341, 398, 481
AloI	GAACNNNNNNTCC	2 cut(s)	27, 59
AluBI	AGCT	3 cut(s)	166, 215, 287
AluI	AGCT	3 cut(s)	166, 215, 287
AlwI	GGATC	1 cut(s)	70
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	158, 346
AspLEI	GCGC	1 cut(s)	496
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	382
AxyI	CCTNAGG	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	145, 358
BccI	CCATC	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	351
BfmI	CTRYAG	2 cut(s)	159, 344
BfuAI	ACCTGC	2 cut(s)	145, 163
BisI	GCNGC	2 cut(s)	159, 347
BlsI	GCNGC	2 cut(s)	160, 348
Bme1390I	CCNGG	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	351
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	481
BmuI	ACTGGG	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	372, 404
BpmI	CTGGAG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	300, 350
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 143, 306
Bse1I	ACTGG	4 cut(s)	61, 131, 332, 412
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	300, 350
BseLI	CCNNNNNNNGG	3 cut(s)	56, 143, 306
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	3 cut(s)	213, 366, 495
BseNI	ACTGG	4 cut(s)	61, 131, 332, 412
BseXI	GCAGC	2 cut(s)	145, 358
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	3 cut(s)	56, 143, 306
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	62
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	3 cut(s)	212, 367, 496
BspLI	GGNNCC	1 cut(s)	148
BspMAI	CTGCAG	2 cut(s)	163, 348
BspMI	ACCTGC	2 cut(s)	145, 163
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	4 cut(s)	61, 131, 332, 412
BssECI	CCNNGG	2 cut(s)	300, 350
BssMI	GATC	1 cut(s)	62
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	3 cut(s)	199, 375, 504
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	2 cut(s)	159, 344
BstV1I	GCAGC	2 cut(s)	145, 358
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	299
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
BveI	ACCTGC	2 cut(s)	145, 163
Cac8I	GCNNGC	1 cut(s)	70
CfoI	GCGC	1 cut(s)	496
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	180
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	3 cut(s)	199, 375, 504
DpnI	GATC	1 cut(s)	64
DpnII	GATC	1 cut(s)	62
EaeI	YGGCCR	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	416
Eco81I	CCTNAGG	1 cut(s)	375
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	183
FaiI	YATR	8 cut(s)	75, 101, 106, 181, 228, 281, 447, 489
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	1 cut(s)	179
FauI	CCCGC	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	159, 347
Fsp4HI	GCNGC	2 cut(s)	159, 347
FspI	TGCGCA	1 cut(s)	495
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	2 cut(s)	159, 347
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	1 cut(s)	350
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188III	TCNNGA	2 cut(s)	292, 374
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	2 cut(s)	312, 440
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	161, 172, 346
HpyF3I	CTNAG	3 cut(s)	199, 375, 504
Hsp92II	CATG	1 cut(s)	183
HspAI	GCGC	1 cut(s)	494
Kzo9I	GATC	1 cut(s)	62
Lsp1109I	GCAGC	2 cut(s)	145, 358
LweI	GCATC	1 cut(s)	481
MaeIII	GTNAC	2 cut(s)	190, 499
MalI	GATC	1 cut(s)	64
MboI	GATC	1 cut(s)	62
MboII	GAAGA	2 cut(s)	232, 493
MlsI	TGGCCA	1 cut(s)	299
MluNI	TGGCCA	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	7 cut(s)	21, 53, 148, 235, 253, 370, 467
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	3 cut(s)	96, 209, 511
Msp20I	TGGCCA	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	351
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	1 cut(s)	62
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	148
NsbI	TGCGCA	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	370
PflMI	CCANNNNNTGG	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	160, 348
PspFI	CCCAGC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	148
PstI	CTGCAG	2 cut(s)	163, 348
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SalI	GTCGAC	1 cut(s)	419
SaqAI	TTAA	3 cut(s)	96, 209, 511
SatI	GCNGC	2 cut(s)	159, 347
Sau3AI	GATC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	2 cut(s)	159, 344
SsiI	CCGC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	420
TaqII	GACCGA	1 cut(s)	428
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	3 cut(s)	96, 209, 511
Tru9I	TTAA	3 cut(s)	96, 209, 511
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	158, 346
TspDTI	ATGAA	4 cut(s)	48, 132, 168, 462
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.