AT1G31200

Phloem protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003915
Physical Location & Seq
Reverse (-)
11146923 .. 11147547
625 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31200.1

Sequence Viewer

Length: 396 bp
ATGCCTGCTGAGCTGAAGATGGTGAGTTGGTTAGAAGTAACCGGTTCATTCGACAAGATTGAACCCGGGAAAACATATCGAATCGGTTTTAAAATCTCGTTTAAACCGGATGCGACCGGTTGGGACAAAGCCCCTGTTTTCATGTCTGCTAAAATCGGGAAGAAAGGCAAGACAGTGTGGAAAAGAATCAAATCCGTTAGCCAGAACTTTGGTATACTGAAAGGTGGATCAGAACCCGTCAATATACCTGACGAGTCCGATGGCCTGTTTGAAATCTTGGTTAGTCCCACAGCGCTTAACCAAGATACTAAGCTTCAGTTTGGTCTGTATGAGGTGTGGACTGGACGATGGAAGACAGGTCTGTTGATCCACGAAGCCTTTGTTCAAGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

131

Amino Acids

14.66

Weight (kDa)

9.13

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 3 - 125 5.4e-17 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 214
AclWI GGATC 2 cut(s) 235, 361
AcuI CTGAAG 2 cut(s) 35, 299
AfeI AGCGCT 1 cut(s) 294
AgeI ACCGGT 2 cut(s) 41, 116
AgsI TTSAA 3 cut(s) 62, 272, 386
AluBI AGCT 2 cut(s) 13, 313
AluI AGCT 2 cut(s) 13, 313
AlwI GGATC 2 cut(s) 235, 361
Ama87I CYCGRG 1 cut(s) 65
Aor51HI AGCGCT 1 cut(s) 294
AoxI GGCC 1 cut(s) 262
AsiGI ACCGGT 2 cut(s) 41, 116
AspLEI GCGC 1 cut(s) 295
AsuC2I CCSGG 2 cut(s) 66, 67
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 359
BccI CCATC 3 cut(s) 13, 254, 342
BcnI CCSGG 2 cut(s) 66, 67
BfoI RGCGCY 1 cut(s) 296
BlpI GCTNAGC 1 cut(s) 9
Bme1390I CCNGG 2 cut(s) 66, 67
BmeT110I CYCGRG 1 cut(s) 65
BmrFI CCNGG 2 cut(s) 66, 67
BmsI GCATC 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 359
Bpu1102I GCTNAGC 1 cut(s) 9
BpuMI CCSGG 2 cut(s) 66, 67
BsaJI CCNNGG 1 cut(s) 65
BsaWI WCCGGW 3 cut(s) 41, 106, 116
Bse118I RCCGGY 2 cut(s) 41, 116
Bse1I ACTGG 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 264
BshTI ACCGGT 2 cut(s) 41, 116
BsiEI CGRYCG 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 4 cut(s) 42, 66, 107, 117
BslFI GGGAC 2 cut(s) 137, 270
BsmFI GGGAC 2 cut(s) 137, 270
BsnI GGCC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 65
Bsp143I GATC 2 cut(s) 227, 366
Bsp1720I GCTNAGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 264
BspPI GGATC 2 cut(s) 235, 361
BsrFI RCCGGY 2 cut(s) 41, 116
BsrI ACTGG 1 cut(s) 346
BssAI RCCGGY 2 cut(s) 41, 116
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 2 cut(s) 227, 366
BssNAI GTATAC 1 cut(s) 215
Bst1107I GTATAC 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 9, 309
BstF5I GGATG 1 cut(s) 115
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 2 cut(s) 230, 369
BstMBI GATC 2 cut(s) 227, 366
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 64, 65
BstV2I GAAGAC 1 cut(s) 359
BstXI CCANNNNNNTGG 1 cut(s) 209
BstZ17I GTATAC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 264
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 295
Cfr10I RCCGGY 2 cut(s) 41, 116
Cfr9I CCCGGG 1 cut(s) 65
CspAI ACCGGT 2 cut(s) 41, 116
CviAII CATG 1 cut(s) 142
CviJI RGCY 6 cut(s) 13, 131, 201, 264, 313, 377
CviKI_1 RGCY 6 cut(s) 13, 131, 201, 264, 313, 377
DdeI CTNAG 2 cut(s) 9, 309
DpnI GATC 2 cut(s) 229, 368
DpnII GATC 2 cut(s) 227, 366
DraI TTTAAA 2 cut(s) 91, 103
Eco47III AGCGCT 1 cut(s) 294
Eco57I CTGAAG 2 cut(s) 35, 299
Eco88I CYCGRG 1 cut(s) 65
FaeI CATG 1 cut(s) 145
FaiI YATR 5 cut(s) 76, 143, 215, 245, 330
FaqI GGGAC 2 cut(s) 137, 270
FatI CATG 1 cut(s) 141
FblI GTMKAC 1 cut(s) 214
FokI GGATG 1 cut(s) 122
GlaI GCGC 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 1 cut(s) 264
HapII CCGG 4 cut(s) 42, 66, 107, 117
HhaI GCGC 1 cut(s) 295
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 3 cut(s) 81, 186, 254
HpaII CCGG 4 cut(s) 42, 66, 107, 117
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 215, 339
Hpy188I TCNGA 2 cut(s) 232, 259
Hpy188III TCNNGA 2 cut(s) 157, 386
Hpy8I GTNNAC 2 cut(s) 215, 339
HpyCH4III ACNGT 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 9, 309
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 1 cut(s) 293
Kzo9I GATC 2 cut(s) 227, 366
LweI GCATC 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 229, 368
MboI GATC 2 cut(s) 227, 366
MboII GAAGA 3 cut(s) 28, 172, 364
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 1 cut(s) 325
MseI TTAA 3 cut(s) 90, 102, 297
MspI CCGG 4 cut(s) 42, 66, 107, 117
MspR9I CCNGG 2 cut(s) 66, 67
MssI GTTTAAAC 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 2 cut(s) 66, 67
NdeII GATC 2 cut(s) 227, 366
NlaIII CATG 1 cut(s) 145
PfeI GAWTC 2 cut(s) 81, 186
PinAI ACCGGT 2 cut(s) 41, 116
PleI GAGTC 1 cut(s) 262
PmeI GTTTAAAC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 262
SaqAI TTAA 3 cut(s) 90, 102, 297
Sau3AI GATC 2 cut(s) 227, 366
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 2 cut(s) 66, 67
SetI ASST 6 cut(s) 15, 226, 250, 315, 336, 361
SfaNI GCATC 1 cut(s) 100
SmaI CCCGGG 1 cut(s) 67
StyD4I CCNGG 2 cut(s) 64, 65
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 51, 79
TfiI GAWTC 2 cut(s) 81, 186
Tru1I TTAA 3 cut(s) 90, 102, 297
Tru9I TTAA 3 cut(s) 90, 102, 297
TscAI CASTG 1 cut(s) 180
TspDTI ATGAA 2 cut(s) 36, 130
TspGWI ACGGA 1 cut(s) 184
TspMI CCCGGG 1 cut(s) 65
TspRI CASTG 1 cut(s) 180
XmaI CCCGGG 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.