AT1G10660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002061
Physical Location & Seq
Forward (+)
3532229 .. 3535137
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10660.3

Sequence Viewer

Length: 963 bp
ATGGCTGCTGATACCACAGCTTCAAGTTACTGGTTGAATTGGAGGGTCCTCCTCTGTGCATTAATCCTCTTAGCTCCAATAGTATTAGCAGCTGTTCTCATTTGGAAATATGAAGGCAAGAGAAGAAGACAACGCGAGAGCCAGCGAGAATTACCAGGGACATTGTTCCAAGATGAAGCTTGGACCACATGTTTTAAAAGAATCCACCCTCTTTGGTTGCTTGCCTTTAGGGTATTCTCGTTTGTTGCAATGTTGACTTTACTCATTTCCAATGTTGTGCGCGATGGAGCTGGCATATTCTACTTCTATACTCAGTGGACATTTACTCTTGTCACACTCTACTTTGGGTATGCTTCGGTGTTATCTGTTTATGGATGCTGCATCTATAATAAAGAAGCTAGTGGAAACATGGAGAGTTATACAAGTATAGGTGATACGGAACAAGGCACTTATAGACCACCAATCGCTCTTGATGGGGAGGGAAATACGTCAAAAGCTTCCAATAGACCTTCAGAAGCACCCGCCCGAAAAACAGCGGGGTTTTGGGTTTATATCTTTCAGATCCTTTTCCAAACTTGTGCAGGTGCTGTTGTGCTAACAGATATTGTATTTTGGGCGATAATCTACCCGTTTACTAAAGGTTACAAGCTGAGTTTTCTCGATGTTTGTATGCATTCTCTCAACGCTGTTTTTCTCCTTGGTGACACAAGCCTCAATTCCTTGCGATTCCCACTGTTCCGGATTGCTTACTTTGTACTTTGGAGCTGTATTTTCGTGGCTTACCAATGGATAATCCATGCCGTCAAGAACTTATGGTGGCCATACCAATTTCTTGATCTTTCGTCACCATACGCACCCTTATGGTACTTGGGAGTGGCTGTGATGCATATACCATGCTTTGCGGTCTTCGCTTTGGTCATAAAGCTGAAGAATTACTTGCTGCAGCAGCGTCACAACTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

36.76

Weight (kDa)

9.03

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 572
Acc36I ACCTGC 1 cut(s) 572
AccII CGCG 2 cut(s) 135, 282
AccIII TCCGGA 1 cut(s) 738
AciI CCGC 3 cut(s) 522, 536, 902
AclWI GGATC 1 cut(s) 556
AcoI YGGCCR 1 cut(s) 818
AcuI CTGAAG 2 cut(s) 495, 947
AfaI GTAC 2 cut(s) 756, 866
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 2 cut(s) 24, 37
AjnI CCWGG 1 cut(s) 154
AlwI GGATC 1 cut(s) 556
AlwNI CAGNNNCTG 1 cut(s) 587
Aor13HI TCCGGA 1 cut(s) 738
AoxI GGCC 1 cut(s) 818
ApeKI GCWGC 6 cut(s) 5, 89, 378, 940, 943, 946
AseI ATTAAT 1 cut(s) 62
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 2 cut(s) 46, 183
AsuHPI GGTGA 3 cut(s) 443, 713, 837
AvaII GGWCC 2 cut(s) 46, 183
BalI TGGCCA 1 cut(s) 820
BauI CACGAG 1 cut(s) 958
BbsI GAAGAC 2 cut(s) 133, 898
BbvI GCAGC 5 cut(s) 101, 365, 927, 955, 958
BccI CCATC 2 cut(s) 278, 467
BceAI ACGGC 1 cut(s) 785
BciT130I CCWGG 1 cut(s) 156
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 1 cut(s) 941
BfuAI ACCTGC 1 cut(s) 572
BisI GCNGC 6 cut(s) 6, 90, 379, 941, 944, 947
BlsI GCNGC 6 cut(s) 7, 91, 380, 942, 945, 948
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 2 cut(s) 46, 183
BmgT120I GGNCC 2 cut(s) 46, 183
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 3 cut(s) 365, 390, 873
BpiI GAAGAC 2 cut(s) 133, 898
BsaJI CCNNGG 2 cut(s) 155, 697
BsaWI WCCGGW 1 cut(s) 738
BsaXI ACNNNNNCTCC 2 cut(s) 864, 894
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 738
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 155, 697
BseGI GGATG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 326, 641
BseNI ACTGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 5 cut(s) 101, 365, 927, 955, 958
BsgI GTGCAG 1 cut(s) 600
Bsh1236I CGCG 2 cut(s) 135, 282
BshFI GGCC 1 cut(s) 820
BsiSI CCGG 1 cut(s) 739
BslFI GGGAC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 1 cut(s) 820
Bsp13I TCCGGA 1 cut(s) 738
Bsp143I GATC 2 cut(s) 561, 835
BspACI CCGC 3 cut(s) 522, 536, 902
BspANI GGCC 1 cut(s) 820
BspCNI CTCAG 2 cut(s) 325, 642
BspEI TCCGGA 1 cut(s) 738
BspFNI CGCG 2 cut(s) 135, 282
BspLI GGNNCC 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 945
BspMI ACCTGC 1 cut(s) 572
BspPI GGATC 1 cut(s) 556
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 155, 697
BssMI GATC 2 cut(s) 561, 835
BssSI CACGAG 1 cut(s) 958
BssT1I CCWWGG 1 cut(s) 697
Bst2BI CACGAG 1 cut(s) 958
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 735
BstC8I GCNNGC 3 cut(s) 143, 222, 292
BstDEI CTNAG 3 cut(s) 70, 312, 650
BstF5I GGATG 1 cut(s) 380
BstFNI CGCG 2 cut(s) 135, 282
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 2 cut(s) 564, 838
BstMBI GATC 2 cut(s) 561, 835
BstMWI GCNNNNNNNGC 2 cut(s) 908, 946
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 941
BstUI CGCG 2 cut(s) 135, 282
BstV1I GCAGC 5 cut(s) 101, 365, 927, 955, 958
BstV2I GAAGAC 2 cut(s) 133, 898
BstX2I RGATCY 1 cut(s) 561
BstYI RGATCY 1 cut(s) 561
BsuRI GGCC 1 cut(s) 820
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 380
BtsIMutI CAGTG 2 cut(s) 320, 731
BveI ACCTGC 1 cut(s) 572
Cac8I GCNNGC 3 cut(s) 143, 222, 292
CaiI CAGNNNCTG 1 cut(s) 587
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 2 cut(s) 46, 183
CseI GACGC 1 cut(s) 938
Csp6I GTAC 2 cut(s) 755, 865
CspCI CAANNNNNGTGG 2 cut(s) 194, 229
CviAII CATG 4 cut(s) 189, 409, 797, 894
CviQI GTAC 2 cut(s) 755, 865
DdeI CTNAG 3 cut(s) 70, 312, 650
DpnI GATC 2 cut(s) 563, 837
DpnII GATC 2 cut(s) 561, 835
DraI TTTAAA 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 818
Eco130I CCWWGG 1 cut(s) 697
Eco47I GGWCC 2 cut(s) 46, 183
Eco57I CTGAAG 2 cut(s) 495, 947
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 697
EcoT22I ATGCAT 2 cut(s) 675, 888
ErhI CCWWGG 1 cut(s) 697
FaeI CATG 4 cut(s) 192, 412, 800, 897
FalI AAGNNNNNCTT 2 cut(s) 920, 952
FaqI GGGAC 1 cut(s) 172
FatI CATG 4 cut(s) 188, 408, 796, 893
FauI CCCGC 2 cut(s) 529, 529
Fnu4HI GCNGC 6 cut(s) 6, 90, 379, 941, 944, 947
FokI GGATG 1 cut(s) 387
Fsp4HI GCNGC 6 cut(s) 6, 90, 379, 941, 944, 947
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 281
GluI GCNGC 6 cut(s) 6, 90, 379, 941, 944, 947
HaeIII GGCC 1 cut(s) 820
HapII CCGG 1 cut(s) 739
HgaI GACGC 1 cut(s) 938
HhaI GCGC 1 cut(s) 282
Hin1II CATG 4 cut(s) 192, 412, 800, 897
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HindIII AAGCTT 2 cut(s) 177, 495
HinfI GANTC 2 cut(s) 201, 726
HpaII CCGG 1 cut(s) 739
HphI GGTGA 3 cut(s) 443, 713, 837
Hpy166II GTNNAC 3 cut(s) 255, 318, 633
Hpy188I TCNGA 2 cut(s) 514, 561
Hpy188III TCNNGA 6 cut(s) 470, 659, 739, 805, 833, 960
Hpy8I GTNNAC 3 cut(s) 255, 318, 633
HpyAV CCTTC 2 cut(s) 107, 519
HpyCH4III ACNGT 1 cut(s) 735
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 7 cut(s) 59, 248, 381, 581, 673, 886, 943
HpyF10VI GCNNNNNNNGC 2 cut(s) 908, 946
HpyF3I CTNAG 3 cut(s) 70, 312, 650
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 4 cut(s) 192, 412, 800, 897
HspAI GCGC 1 cut(s) 280
Kpn2I TCCGGA 1 cut(s) 738
Kzo9I GATC 2 cut(s) 561, 835
LmnI GCTCC 3 cut(s) 79, 287, 762
LpnPI CCDG 7 cut(s) 16, 141, 155, 168, 276, 567, 752
Lsp1109I GCAGC 5 cut(s) 101, 365, 927, 955, 958
LweI GCATC 3 cut(s) 365, 390, 873
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 6 cut(s) 26, 331, 641, 701, 843, 950
MalI GATC 2 cut(s) 563, 837
MboI GATC 2 cut(s) 561, 835
MboII GAAGA 4 cut(s) 135, 138, 898, 940
MflI RGATCY 1 cut(s) 561
MlsI TGGCCA 1 cut(s) 820
MluCI AATT 5 cut(s) 37, 149, 715, 827, 931
MluNI TGGCCA 1 cut(s) 820
MnlI CCTC 7 cut(s) 36, 59, 62, 77, 219, 472, 722
Mox20I TGGCCA 1 cut(s) 820
Mph1103I ATGCAT 2 cut(s) 675, 888
MroI TCCGGA 1 cut(s) 738
MscI TGGCCA 1 cut(s) 820
MseI TTAA 2 cut(s) 62, 195
MslI CAYNNNNRTG 1 cut(s) 859
Msp20I TGGCCA 1 cut(s) 820
MspA1I CMGCKG 2 cut(s) 92, 536
MspI CCGG 1 cut(s) 739
MspR9I CCNGG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 2 cut(s) 135, 282
MwoI GCNNNNNNNGC 2 cut(s) 908, 946
NdeII GATC 2 cut(s) 561, 835
NlaIII CATG 4 cut(s) 192, 412, 800, 897
NlaIV GGNNCC 1 cut(s) 47
NmuCI GTSAC 4 cut(s) 331, 701, 843, 950
NsiI ATGCAT 2 cut(s) 675, 888
NspI RCATGY 1 cut(s) 192
PaqCI CACCTGC 1 cut(s) 572
PciI ACATGT 1 cut(s) 188
PctI GAATGC 1 cut(s) 673
PfeI GAWTC 2 cut(s) 201, 726
PkrI GCNGC 6 cut(s) 7, 91, 380, 942, 945, 948
PpuMI RGGWCCY 1 cut(s) 46
PscI ACATGT 1 cut(s) 188
PshBI ATTAAT 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 2 cut(s) 46, 183
PspPPI RGGWCCY 1 cut(s) 46
PstI CTGCAG 1 cut(s) 945
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 1 cut(s) 561
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 2 cut(s) 756, 866
RsaNI GTAC 2 cut(s) 755, 865
RseI CAYNNNNRTG 1 cut(s) 859
SaqAI TTAA 2 cut(s) 62, 195
SatI GCNGC 6 cut(s) 6, 90, 379, 941, 944, 947
Sau3AI GATC 2 cut(s) 561, 835
Sau96I GGNCC 2 cut(s) 46, 183
ScrFI CCNGG 1 cut(s) 156
SfaNI GCATC 3 cut(s) 365, 390, 873
SfcI CTRYAG 1 cut(s) 941
SinI GGWCC 2 cut(s) 46, 183
SmiMI CAYNNNNRTG 1 cut(s) 859
Sse9I AATT 5 cut(s) 37, 149, 715, 827, 931
SsiI CCGC 3 cut(s) 522, 536, 902
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 697
TaaI ACNGT 1 cut(s) 735
TaiI ACGT 1 cut(s) 491
TaqI TCGA 1 cut(s) 660
TasI AATT 5 cut(s) 37, 149, 715, 827, 931
TatI WGTACW 1 cut(s) 754
TfiI GAWTC 2 cut(s) 201, 726
Tru1I TTAA 2 cut(s) 62, 195
Tru9I TTAA 2 cut(s) 62, 195
TscAI CASTG 2 cut(s) 320, 738
TseFI GTSAC 4 cut(s) 331, 701, 843, 950
TseI GCWGC 6 cut(s) 5, 89, 378, 940, 943, 946
Tsp45I GTSAC 4 cut(s) 331, 701, 843, 950
TspDTI ATGAA 2 cut(s) 126, 189
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 2 cut(s) 320, 738
VpaK11BI GGWCC 2 cut(s) 46, 183
VspI ATTAAT 1 cut(s) 62
XceI RCATGY 1 cut(s) 192
XspI CTAG 1 cut(s) 399
Zsp2I ATGCAT 2 cut(s) 675, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.