Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Forward (+)

73473560 .. 73475332

Gene Structure 1773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG524200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGACCACGGATACTAATGTTCTAAGCTATTGGAACAACTGGAGGTTCTTGATCTGTGCAATATTTATATTGAGTAGTATCGTGCTAGCCGCAGTTCTTATATGGAAATATGAAGGCTGCAAAAAATCCAGAAGGGAAAGAAGAGAAAATCAGCGCGAAACAGTAGGATCTCTATATGAGGATGAAGCCTGGAGGACATCTCTCAAAGTAATTCATCCCGCTTGGCTTCTTGCTTACAGATTAATTGCTTTCGTTGTGCTTCTATCCTTGATAGTTACCAATATTGTTCTTGATGGAGTTGGCATACTTTACTTCTACACTCAGTGGACATTTTGTTTGGTTACAATCTATTTTGGGCTTGGATCTTCACTCTCCATTTATGGATGCTACAAATACCGCAGTAGAGTTGGTGGGGATGCAGCTGATCATGTGAGAGATGAAGAGCGAGGTACTTATGTTGCTCCAACACTTGGGGAAAATGCAGATACATCCAACACATATAAAAGTTTTACTGATGAAGAATGTCCCTCTCGCAAAGGCGCTGGTGTATATGTTTATATCTTTCAAGTCATTTATCAGATGTGTGGGGGTGCTGTGGTGCTCACAGATGTTATATTTTGGCTCATTTTGTATCCATTTCTAACAAGCAAAGATTACAAACTGAACTTTATGATGGTCAGTATGCACTCATTCAATGTTGTTTTCCTCCTTGGTGAGACAATATTGAATAGCTTGCGGTTTCCATTGTTTCGGATCTCATATTTTGTGCTATGGACGGGAATATTCGTGATTTTCCAATGGATAATCCATGCTTGTAAAAACATGTGGTGGCCTTATCCATTTCTTGACTTGTCATCCTCATATGCACCCTTATGGTATGTTGTTTACCTCAATCAGTCGGTAATTCTACAAATTGAACTAACACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

35.95

Weight (kDa)

7.54

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccII	CGCG	1 cut(s)	156
AciI	CCGC	4 cut(s)	90, 219, 397, 736
AclWI	GGATC	3 cut(s)	175, 370, 761
AdeI	CACNNNGTG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	1 cut(s)	470
AflIII	ACRYGT	1 cut(s)	822
AgsI	TTSAA	4 cut(s)	566, 694, 727, 917
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	3 cut(s)	27, 422, 732
AluI	AGCT	3 cut(s)	27, 422, 732
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	1 cut(s)	710
AlwI	GGATC	3 cut(s)	175, 370, 761
AoxI	GGCC	1 cut(s)	830
ApeKI	GCWGC	2 cut(s)	117, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AseI	ATTAAT	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	156, 542
AsuHPI	GGTGA	1 cut(s)	725
AsuNHI	GCTAGC	1 cut(s)	85
BaeI	ACNNNNGTAYC	3 cut(s)	36, 441, 474
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	104, 431
BccI	CCATC	2 cut(s)	287, 667
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	2 cut(s)	4, 642
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	543
BfuI	GTATCC	2 cut(s)	4, 642
BisI	GCNGC	3 cut(s)	90, 118, 420
BlsI	GCNGC	3 cut(s)	91, 119, 421
Bme1390I	CCNGG	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	374, 406
BmtI	GCTAGC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
BpmI	CTGGAG	2 cut(s)	61, 211
BsaJI	CCNNGG	2 cut(s)	6, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	6, 709
BseGI	GGATG	6 cut(s)	187, 214, 389, 421, 488, 854
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	104, 431
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	832
BsiHKAI	GWGCWC	1 cut(s)	603
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	710
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	1 cut(s)	832
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	5 cut(s)	51, 167, 362, 424, 753
BspACI	CCGC	4 cut(s)	90, 219, 397, 736
BspANI	GGCC	1 cut(s)	832
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	156
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	3 cut(s)	175, 370, 761
BspQI	GCTCTTC	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	6, 709
BssMI	GATC	5 cut(s)	51, 167, 362, 424, 753
BssT1I	CCWWGG	1 cut(s)	709
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	136, 435
BstC8I	GCNNGC	2 cut(s)	87, 734
BstDEI	CTNAG	2 cut(s)	23, 321
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	6 cut(s)	187, 214, 389, 421, 488, 854
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	2 cut(s)	156, 542
BstKTI	GATC	5 cut(s)	54, 170, 365, 427, 756
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	5 cut(s)	51, 167, 362, 424, 753
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	826
BstSCI	CCNGG	1 cut(s)	188
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	104, 431
BstX2I	RGATCY	3 cut(s)	167, 362, 753
BstYI	RGATCY	3 cut(s)	167, 362, 753
BsuI	GTATCC	2 cut(s)	4, 642
BsuRI	GGCC	1 cut(s)	832
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	6 cut(s)	187, 214, 389, 421, 488, 854
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	87, 734
CfoI	GCGC	2 cut(s)	156, 542
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	3 cut(s)	428, 809, 823
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	2 cut(s)	23, 321
DpnI	GATC	5 cut(s)	53, 169, 364, 426, 755
DpnII	GATC	5 cut(s)	51, 167, 362, 424, 753
DraIII	CACNNNGTG	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	136, 435
EarI	CTCTTC	2 cut(s)	136, 435
Eco130I	CCWWGG	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	709
FaeI	CATG	3 cut(s)	431, 812, 826
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	3 cut(s)	427, 808, 822
FauI	CCCGC	1 cut(s)	226
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	90, 118, 420
FokI	GGATG	6 cut(s)	194, 201, 396, 428, 475, 841
Fsp4HI	GCNGC	3 cut(s)	90, 118, 420
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	2 cut(s)	155, 541
GluI	GCNGC	3 cut(s)	90, 118, 420
GsuI	CTGGAG	2 cut(s)	61, 211
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	832
HhaI	GCGC	2 cut(s)	156, 542
Hin1II	CATG	3 cut(s)	431, 812, 826
Hin6I	GCGC	2 cut(s)	154, 540
HinP1I	GCGC	2 cut(s)	154, 540
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	2 cut(s)	327, 886
Hpy188I	TCNGA	2 cut(s)	579, 753
Hpy188III	TCNNGA	5 cut(s)	49, 129, 290, 787, 845
Hpy8I	GTNNAC	2 cut(s)	327, 886
HpyAV	CCTTC	2 cut(s)	107, 126
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	6 cut(s)	59, 120, 419, 482, 685, 866
HpyF3I	CTNAG	2 cut(s)	23, 321
Hsp92II	CATG	3 cut(s)	431, 812, 826
HspAI	GCGC	2 cut(s)	154, 540
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	5 cut(s)	51, 167, 362, 424, 753
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	466
LpnPI	CCDG	5 cut(s)	25, 142, 175, 202, 528
Lsp1109I	GCAGC	2 cut(s)	104, 431
LweI	GCATC	2 cut(s)	374, 406
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	274, 340
MalI	GATC	5 cut(s)	53, 169, 364, 426, 755
MboI	GATC	5 cut(s)	51, 167, 362, 424, 753
MboII	GAAGA	4 cut(s)	153, 357, 452, 530
MflI	RGATCY	3 cut(s)	167, 362, 753
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	4 cut(s)	210, 243, 903, 912
MmeI	TCCRAC	2 cut(s)	488, 516
MnlI	CCTC	8 cut(s)	36, 172, 186, 440, 538, 716, 868, 899
MseI	TTAA	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	871
MspA1I	CMGCKG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	156
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	5 cut(s)	51, 167, 362, 424, 753
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	3 cut(s)	431, 812, 826
NspI	RCATGY	1 cut(s)	826
PciI	ACATGT	1 cut(s)	822
PciSI	GCTCTTC	1 cut(s)	435
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	91, 119, 421
PscI	ACATGT	1 cut(s)	822
PshBI	ATTAAT	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PsuI	RGATCY	3 cut(s)	167, 362, 753
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	871
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	3 cut(s)	90, 118, 420
Sau3AI	GATC	5 cut(s)	51, 167, 362, 424, 753
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	603
SetI	ASST	6 cut(s)	29, 47, 424, 451, 734, 891
SfaNI	GCATC	2 cut(s)	374, 406
SmiMI	CAYNNNNRTG	1 cut(s)	871
Sse9I	AATT	4 cut(s)	210, 243, 903, 912
SsiI	CCGC	4 cut(s)	90, 219, 397, 736
SspI	AATATT	4 cut(s)	63, 283, 723, 783
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	1 cut(s)	163
TasI	AATT	4 cut(s)	210, 243, 903, 912
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	1 cut(s)	329
TseI	GCWGC	2 cut(s)	117, 419
TspDTI	ATGAA	5 cut(s)	126, 198, 203, 453, 531
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	329
Van91I	CCANNNNNTGG	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	242
XceI	RCATGY	1 cut(s)	826
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.