Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Reverse (-)

60689688 .. 60692108

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCTACGGCTACTACTGCTCCAAGGTATTGGTGGAACTGGAGGTTCTTGACCGGTGCAGTATTTATATTGTCTAGTATAGTTATGGCTGCAGTTCTTATAAGGAAATATGAAGGCTGCAAAAAATCCAGGAGGGAAAGAAGAGAAAACCAGCGTGAAACAGTAGGATCTTTATATGAGGATGAAGCCTGGAGGACATCTTTCAAAGTAATTCATCCCGCTTGGCTTCTTGCGTACAGAATAGCTGCTTTCGTTGTGCTTCTGGCCTTGATAATTACCAATTTTATTCTTGATGGAGCTGTCATAGTTTTCTTCTATACTCAGTGGACATTTTGTTTGGTCACAATCTATTTTGCGATTGGAATTTCACTCTCCATTCATGGATGCTACAAATACCGCAATAGAGTTGGCGAGGATGCAGCTGATTATGTGAGAGATGAAGAGGAAGGTACATATATTGCTACAACACTCGGCGAAAATGAAGATACATTCAACACGTCTAAAAGTTTTACTGATGAAGAATGTCCCTCCCGCAAAGCCGCAGGAGTATATGTTTATATCTTTCAAGTCATTTATCAGATGTGTGGGGGTGCTGTGGTGCTCACTGATGTTGTATTTTGGTCCCTTCTGTATCCAAATCTAGATAGCGAATATGACGAACTGGACTTTATTATGGCCAGTATGCACTCATTCAATCTTGGTCTCCTCCTTGGTGATACAATTTTGAATGGCATGCGGTTTCCAATGTTTCGAATCTCATATTTTGTGCTATGGACGGGATTATTCGTGATTTTCCAGTGGCCTTATCCATTTCTCGACTTGTCATCCAATTATGCACCCTTATGGTATCTTGGGGTCGGAGTGGCGCATATCCCATGCTACGGCGCCTATGCTTTAATTATTAGGATGAAGCAGTTTTGGTTCTCAAGGTCATTCCCGAAGTCTTTTCAGGGGGGAGATGACACACTGCCTTCATCGAATCACAAGACTTCATACTGTGCCACCAACCCGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

38.87

Weight (kDa)

5.99

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	884
AciI	CCGC	5 cut(s)	219, 397, 532, 540, 736
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	675
AcsI	RAATTY	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	885
AfaI	GTAC	2 cut(s)	236, 451
AfiI	CCNNNNNNNGG	1 cut(s)	881
AflIII	ACRYGT	1 cut(s)	495
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	5 cut(s)	205, 493, 566, 694, 727
AjiI	CACGTC	1 cut(s)	498
AjnI	CCWGG	2 cut(s)	128, 188
AluBI	AGCT	3 cut(s)	245, 299, 422
AluI	AGCT	3 cut(s)	245, 299, 422
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	1 cut(s)	707
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	3 cut(s)	264, 675, 800
ApeKI	GCWGC	4 cut(s)	89, 117, 245, 419
ApoI	RAATTY	1 cut(s)	363
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AsiGI	ACCGGT	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	868, 887
AspS9I	GGNCC	1 cut(s)	621
AsuHPI	GGTGA	1 cut(s)	725
AsuII	TTCGAA	1 cut(s)	751
AvaII	GGWCC	1 cut(s)	621
BalI	TGGCCA	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	884
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	4 cut(s)	76, 104, 232, 431
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	2 cut(s)	24, 898
BciT130I	CCWGG	2 cut(s)	130, 190
BciVI	GTATCC	1 cut(s)	642
BcoDI	GTCTC	1 cut(s)	707
BfaI	CTAG	2 cut(s)	75, 641
BfmI	CTRYAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	888
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	5 cut(s)	90, 118, 246, 420, 540
BlsI	GCNGC	5 cut(s)	91, 119, 247, 421, 541
Bme1390I	CCNGG	2 cut(s)	130, 190
Bme18I	GGWCC	1 cut(s)	621
BmgBI	CACGTC	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	2 cut(s)	623, 886
BmrFI	CCNGG	2 cut(s)	130, 190
BmsI	GCATC	2 cut(s)	374, 406
BpmI	CTGGAG	2 cut(s)	61, 211
Bpu14I	TTCGAA	1 cut(s)	751
BpuEI	CTTGAG	1 cut(s)	910
BsaHI	GRCGYC	1 cut(s)	885
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	2 cut(s)	23, 709
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 537, 567
Bsc4I	CCNNNNNNNGG	1 cut(s)	881
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	4 cut(s)	44, 666, 678, 796
BseBI	CCWGG	2 cut(s)	130, 190
BseDI	CCNNGG	2 cut(s)	23, 709
BseGI	GGATG	6 cut(s)	187, 214, 389, 421, 824, 912
BseLI	CCNNNNNNNGG	1 cut(s)	881
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	4 cut(s)	44, 666, 678, 796
BseRI	GAGGAG	1 cut(s)	695
BseXI	GCAGC	4 cut(s)	76, 104, 232, 431
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	3 cut(s)	266, 677, 802
BshNI	GGYRCC	1 cut(s)	884
BshTI	ACCGGT	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	2 cut(s)	510, 607
BslI	CCNNNNNNNGG	1 cut(s)	881
BsmAI	GTCTC	1 cut(s)	707
BsmFI	GGGAC	2 cut(s)	510, 607
BsnI	GGCC	3 cut(s)	266, 677, 802
Bso31I	GGTCTC	1 cut(s)	707
Bsp119I	TTCGAA	1 cut(s)	751
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	1 cut(s)	167
BspACI	CCGC	5 cut(s)	219, 397, 532, 540, 736
BspANI	GGCC	3 cut(s)	266, 677, 802
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	623, 886
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	175
BspT104I	TTCGAA	1 cut(s)	751
BspT107I	GGYRCC	1 cut(s)	884
BspTNI	GGTCTC	1 cut(s)	707
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	4 cut(s)	44, 666, 678, 796
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	2 cut(s)	23, 709
BssMI	GATC	1 cut(s)	167
BssNI	GRCGYC	1 cut(s)	885
BssT1I	CCWWGG	2 cut(s)	23, 709
Bst2UI	CCWGG	2 cut(s)	130, 190
Bst4CI	ACNGT	2 cut(s)	163, 998
Bst6I	CTCTTC	2 cut(s)	136, 435
BstACI	GRCGYC	1 cut(s)	885
BstBI	TTCGAA	1 cut(s)	751
BstC8I	GCNNGC	1 cut(s)	734
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	6 cut(s)	187, 214, 389, 421, 824, 912
BstH2I	RGCGCY	1 cut(s)	888
BstHHI	GCGC	2 cut(s)	868, 887
BstKTI	GATC	1 cut(s)	170
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	2 cut(s)	130, 190
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	2 cut(s)	128, 188
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	4 cut(s)	76, 104, 232, 431
BstX2I	RGATCY	1 cut(s)	167
BstXI	CCANNNNNNTGG	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	3 cut(s)	266, 677, 802
BtrI	CACGTC	1 cut(s)	498
BtsCI	GGATG	6 cut(s)	187, 214, 389, 421, 824, 912
BtsI	GCAGTG	1 cut(s)	965
BtsIMutI	CAGTG	4 cut(s)	329, 603, 803, 965
Cac8I	GCNNGC	1 cut(s)	734
CfoI	GCGC	2 cut(s)	868, 887
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	235, 450
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	3 cut(s)	380, 733, 876
CviQI	GTAC	2 cut(s)	235, 450
DdeI	CTNAG	1 cut(s)	321
DinI	GGCGCC	1 cut(s)	886
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	2 cut(s)	136, 435
EarI	CTCTTC	2 cut(s)	136, 435
Eco130I	CCWWGG	2 cut(s)	23, 709
Eco31I	GGTCTC	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	621
EcoRII	CCWGG	2 cut(s)	128, 188
EcoT14I	CCWWGG	2 cut(s)	23, 709
EgeI	GGCGCC	1 cut(s)	886
EheI	GGCGCC	1 cut(s)	886
ErhI	CCWWGG	2 cut(s)	23, 709
FaeI	CATG	3 cut(s)	383, 736, 879
FaqI	GGGAC	2 cut(s)	510, 607
FatI	CATG	3 cut(s)	379, 732, 875
FauI	CCCGC	2 cut(s)	226, 539
Fnu4HI	GCNGC	5 cut(s)	90, 118, 246, 420, 540
FokI	GGATG	6 cut(s)	194, 201, 396, 428, 811, 919
Fsp4HI	GCNGC	5 cut(s)	90, 118, 246, 420, 540
FspBI	CTAG	2 cut(s)	75, 641
GlaI	GCGC	2 cut(s)	867, 886
GluI	GCNGC	5 cut(s)	90, 118, 246, 420, 540
GsuI	CTGGAG	2 cut(s)	61, 211
HaeII	RGCGCY	1 cut(s)	888
HaeIII	GGCC	3 cut(s)	266, 677, 802
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	2 cut(s)	868, 887
Hin1I	GRCGYC	1 cut(s)	885
Hin1II	CATG	3 cut(s)	383, 736, 879
Hin6I	GCGC	2 cut(s)	866, 885
HinP1I	GCGC	2 cut(s)	866, 885
HinfI	GANTC	2 cut(s)	753, 979
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	579, 860
Hpy188III	TCNNGA	6 cut(s)	49, 290, 641, 787, 815, 937
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	4 cut(s)	107, 440, 635, 981
HpyCH4III	ACNGT	2 cut(s)	163, 998
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	6 cut(s)	59, 92, 120, 419, 685, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	497
Hsp92I	GRCGYC	1 cut(s)	885
Hsp92II	CATG	3 cut(s)	383, 736, 879
HspAI	GCGC	2 cut(s)	866, 885
KasI	GGCGCC	1 cut(s)	884
Kzo9I	GATC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	25, 296
Lsp1109I	GCAGC	4 cut(s)	76, 104, 232, 431
LweI	GCATC	2 cut(s)	374, 406
MaeI	CTAG	2 cut(s)	75, 641
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	5 cut(s)	153, 304, 452, 494, 530
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	603
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	7 cut(s)	210, 273, 280, 363, 720, 829, 897
MluNI	TGGCCA	1 cut(s)	677
Mly113I	GGCGCC	1 cut(s)	885
MmeI	TCCRAC	1 cut(s)	838
MnlI	CCTC	8 cut(s)	36, 126, 172, 186, 406, 436, 538, 716
Mox20I	TGGCCA	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	1 cut(s)	896
MslI	CAYNNNNRTG	1 cut(s)	841
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	130, 190
MvaI	CCWGG	2 cut(s)	130, 190
MwoI	GCNNNNNNNGC	1 cut(s)	17
NarI	GGCGCC	1 cut(s)	885
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	383, 736, 879
NlaIV	GGNNCC	2 cut(s)	623, 886
NmeAIII	GCCGAG	1 cut(s)	450
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	736
NspV	TTCGAA	1 cut(s)	751
PaeI	GCATGC	1 cut(s)	736
PfeI	GAWTC	2 cut(s)	753, 979
PfoI	TCCNGGA	1 cut(s)	128
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	91, 119, 247, 421, 541
PluTI	GGCGCC	1 cut(s)	888
PsiI	TTATAA	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	128, 188
PspGI	CCWGG	2 cut(s)	128, 188
PspN4I	GGNNCC	2 cut(s)	623, 886
PspPI	GGNCC	1 cut(s)	621
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	236, 451
RsaNI	GTAC	2 cut(s)	235, 450
RseI	CAYNNNNRTG	1 cut(s)	841
SaqAI	TTAA	1 cut(s)	896
SatI	GCNGC	5 cut(s)	90, 118, 246, 420, 540
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	1 cut(s)	621
ScrFI	CCNGG	2 cut(s)	130, 190
SduI	GDGCHC	1 cut(s)	603
SetI	ASST	8 cut(s)	29, 47, 247, 301, 424, 451, 500, 932
SfaNI	GCATC	2 cut(s)	374, 406
SfcI	CTRYAG	1 cut(s)	90
SfoI	GGCGCC	1 cut(s)	886
SfuI	TTCGAA	1 cut(s)	751
SinI	GGWCC	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	841
SmlI	CTYRAG	1 cut(s)	925
SmoI	CTYRAG	1 cut(s)	925
SphI	GCATGC	1 cut(s)	736
Sse9I	AATT	7 cut(s)	210, 273, 280, 363, 720, 829, 897
SsiI	CCGC	5 cut(s)	219, 397, 532, 540, 736
SspDI	GGCGCC	1 cut(s)	884
SspMI	CTAG	2 cut(s)	75, 641
StyD4I	CCNGG	2 cut(s)	128, 188
StyI	CCWWGG	2 cut(s)	23, 709
TaaI	ACNGT	2 cut(s)	163, 998
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	3 cut(s)	751, 816, 977
TasI	AATT	7 cut(s)	210, 273, 280, 363, 720, 829, 897
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	2 cut(s)	753, 979
Tru1I	TTAA	1 cut(s)	896
Tru9I	TTAA	1 cut(s)	896
TscAI	CASTG	4 cut(s)	329, 610, 803, 972
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	4 cut(s)	89, 117, 245, 419
Tsp45I	GTSAC	1 cut(s)	340
TspRI	CASTG	4 cut(s)	329, 610, 803, 972
VpaK11BI	GGWCC	1 cut(s)	621
XapI	RAATTY	1 cut(s)	363
XbaI	TCTAGA	1 cut(s)	640
XceI	RCATGY	1 cut(s)	736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XspI	CTAG	2 cut(s)	75, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.