Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Forward (+)

26570226 .. 26572821

Gene Structure 2596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G70505.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGTGAAGAATGTGTTTAGCAGAATTGATTTGTCGAGTTTTATTACAGGTTCAACTGAACATACTTGGCAACCAACAATGACTTCGGAGACAAACATTCCAAGTTACTGGCTTAACTGGAGATTCTTCGTCTGTGCAATCTTTGTCTTAACGTCTCTGTTTCTATCTTCTTATCTGATTTGGAGATATGAAGGACCAATAAAACGCAAGAAACGTGGTGATGATCAAAGCCTGGAGCTAGAACAACTCACAGGAGTTGTATATGATGATGAATCTTGGAATACTAGTGTCAAAGAGATTCATCCGAATTGGTTGTTAGGTTTTCGTGTTTTTGGTTTTGTTGTTCTTCTTGGACTTATCTCTGGTAATGCTATTGCTGATGGAACCGGCATTTTCATCTTCTACACACAATGGACTTTCACATTGGTCACAATTTACTTTGGGCTTGGATCATTGGTGTCCATATACAGATTTAGGTCTCCTGATAATGGTGAAAACAGAGTTAGTATAGTAGATGAAGAGCAAGGGACGTATAGACCTCCCGGGAATGCCGAAAACTCGAATGTGTTTAAATCTTCAAGCGGACACGATAGAGAAAACATGTCTACACGTCAGGTTGCAACTACATTGGGTTACATTCATCAGATTCTTTTTCAAACTTGTGCAGGAGCTGTATTGCTCACAGATGGTGTGTTTTGGTTCATTATCTATCCTTTTCTCACAGCTAAAGATTTCAATCTCGACTTTTTTATTGTGATTATGCACTCGGTCAATGCTATCTTCCTCCTCGGTGAAACTTTCTTGAATTCTCTGGGTTTCATACTTTGTGGTATGGACCGGCATATTCGTGCTATTTCAATGGATTGTTCATGCTTGTGTCTCCTTTTGGTGGCCTTACCCATTCTTGGATTTGTCATCATCCTATGCTCCTTTATGGTATGCGGCTGTTGGGTTGATGCACATACCATGCTTTGGAATATTTGCTTTGATCGTGAAGTTGAAGCACTTGTGGCTCTCAAGATGTTACTCAGAAGGAACATAATAACATATATCATATACATATACTCAAATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

358

Amino Acids

40.83

Weight (kDa)

5.65

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	972
AccI	GTMKAC	1 cut(s)	605
AciI	CCGC	2 cut(s)	582, 942
AclWI	GGATC	1 cut(s)	457
AcsI	RAATTY	1 cut(s)	805
AfiI	CCNNNNNNNGG	4 cut(s)	488, 889, 905, 972
AflIII	ACRYGT	2 cut(s)	600, 608
AgsI	TTSAA	7 cut(s)	54, 579, 656, 736, 805, 858, 1001
AhlI	ACTAGT	1 cut(s)	284
AjiI	CACGTC	1 cut(s)	611
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AluBI	AGCT	3 cut(s)	238, 671, 725
AluI	AGCT	3 cut(s)	238, 671, 725
Alw26I	GTCTC	4 cut(s)	83, 159, 483, 884
AlwI	GGATC	1 cut(s)	457
AlwNI	CAGNNNCTG	1 cut(s)	671
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	1 cut(s)	891
ApoI	RAATTY	1 cut(s)	805
AspS9I	GGNCC	2 cut(s)	194, 835
AsuC2I	CCSGG	2 cut(s)	543, 544
AsuHPI	GGTGA	4 cut(s)	16, 230, 503, 803
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	2 cut(s)	194, 835
BccI	CCATC	2 cut(s)	374, 680
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	2 cut(s)	543, 544
BcoDI	GTCTC	4 cut(s)	83, 159, 483, 884
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	2 cut(s)	239, 285
BisI	GCNGC	1 cut(s)	943
BlsI	GCNGC	1 cut(s)	944
Bme1390I	CCNGG	3 cut(s)	233, 543, 544
Bme18I	GGWCC	2 cut(s)	194, 835
BmeT110I	CYCGRG	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	611
BmgT120I	GGNCC	2 cut(s)	194, 835
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	3 cut(s)	233, 543, 544
BmsI	GCATC	1 cut(s)	946
BpmI	CTGGAG	2 cut(s)	139, 254
BpuEI	CTTGAG	1 cut(s)	1001
BpuMI	CCSGG	2 cut(s)	543, 544
BsaBI	GATNNNNATC	1 cut(s)	735
BsaI	GGTCTC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	542, 787
Bsc4I	CCNNNNNNNGG	4 cut(s)	488, 889, 905, 972
Bse118I	RCCGGY	2 cut(s)	386, 837
Bse1I	ACTGG	2 cut(s)	113, 122
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	542, 787
BseGI	GGATG	2 cut(s)	301, 918
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	4 cut(s)	488, 889, 905, 972
BseMII	CTCAG	1 cut(s)	1042
BseNI	ACTGG	2 cut(s)	113, 122
BseRI	GAGGAG	1 cut(s)	776
BsgI	GTGCAG	1 cut(s)	684
BshFI	GGCC	1 cut(s)	893
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	3 cut(s)	387, 543, 838
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	4 cut(s)	488, 889, 905, 972
BsmAI	GTCTC	4 cut(s)	83, 159, 483, 884
BsmBI	CGTCTC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	541
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	1 cut(s)	893
Bso31I	GGTCTC	1 cut(s)	483
BsoBI	CYCGRG	1 cut(s)	542
Bsp143I	GATC	3 cut(s)	223, 449, 988
BspACI	CCGC	2 cut(s)	582, 942
BspANI	GGCC	1 cut(s)	893
BspCNI	CTCAG	1 cut(s)	1041
BspLI	GGNNCC	1 cut(s)	385
BspPI	GGATC	1 cut(s)	457
BspQI	GCTCTTC	1 cut(s)	513
BspTNI	GGTCTC	1 cut(s)	483
BsrFI	RCCGGY	2 cut(s)	386, 837
BsrI	ACTGG	2 cut(s)	113, 122
BssAI	RCCGGY	2 cut(s)	386, 837
BssECI	CCNNGG	2 cut(s)	542, 787
BssMI	GATC	3 cut(s)	223, 449, 988
Bst2UI	CCWGG	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	513
BstDEI	CTNAG	1 cut(s)	1028
BstF5I	GGATG	2 cut(s)	301, 918
BstKTI	GATC	3 cut(s)	226, 452, 991
BstMAI	GTCTC	4 cut(s)	83, 159, 483, 884
BstMBI	GATC	3 cut(s)	223, 449, 988
BstMWI	GCNNNNNNNGC	1 cut(s)	1010
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	3 cut(s)	231, 541, 542
BstXI	CCANNNNNNTGG	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	893
BtrI	CACGTC	1 cut(s)	611
BtsCI	GGATG	2 cut(s)	301, 918
CaiI	CAGNNNCTG	1 cut(s)	671
Cfr10I	RCCGGY	2 cut(s)	386, 837
Cfr13I	GGNCC	2 cut(s)	194, 835
Cfr9I	CCCGGG	1 cut(s)	542
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	3 cut(s)	601, 870, 967
CviJI	RGCY	9 cut(s)	112, 231, 238, 445, 671, 725, 893, 945, 1013
CviKI_1	RGCY	9 cut(s)	112, 231, 238, 445, 671, 725, 893, 945, 1013
DdeI	CTNAG	1 cut(s)	1028
DpnI	GATC	3 cut(s)	225, 451, 990
DpnII	GATC	3 cut(s)	223, 449, 988
DraI	TTTAAA	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco31I	GGTCTC	1 cut(s)	483
Eco47I	GGWCC	2 cut(s)	194, 835
Eco88I	CYCGRG	1 cut(s)	542
EcoRI	GAATTC	1 cut(s)	805
EcoRII	CCWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	3 cut(s)	604, 873, 970
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	3 cut(s)	600, 869, 966
FbaI	TGATCA	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	605
Fnu4HI	GCNGC	1 cut(s)	943
FokI	GGATG	2 cut(s)	288, 905
Fsp4HI	GCNGC	1 cut(s)	943
FspBI	CTAG	2 cut(s)	239, 285
GluI	GCNGC	1 cut(s)	943
GsuI	CTGGAG	2 cut(s)	139, 254
HaeIII	GGCC	1 cut(s)	893
HapII	CCGG	3 cut(s)	387, 543, 838
Hin1II	CATG	3 cut(s)	604, 873, 970
HinfI	GANTC	4 cut(s)	123, 272, 298, 646
HpaII	CCGG	3 cut(s)	387, 543, 838
HphI	GGTGA	4 cut(s)	16, 230, 503, 803
Hpy166II	GTNNAC	1 cut(s)	606
Hpy188I	TCNGA	5 cut(s)	88, 177, 306, 645, 1031
Hpy188III	TCNNGA	5 cut(s)	482, 740, 802, 992, 1018
Hpy8I	GTNNAC	1 cut(s)	606
HpyAV	CCTTC	2 cut(s)	185, 1026
HpyCH4IV	ACGT	4 cut(s)	152, 214, 530, 610
HpyCH4V	TGCA	5 cut(s)	137, 620, 665, 763, 959
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1010
HpyF3I	CTNAG	1 cut(s)	1028
HpySE526I	ACGT	4 cut(s)	152, 214, 530, 610
Hsp92II	CATG	3 cut(s)	604, 873, 970
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	223, 449, 988
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	3 cut(s)	235, 668, 932
LweI	GCATC	1 cut(s)	946
MaeI	CTAG	2 cut(s)	239, 285
MaeII	ACGT	4 cut(s)	152, 214, 530, 610
MaeIII	GTNAC	4 cut(s)	104, 427, 632, 1023
MalI	GATC	3 cut(s)	225, 451, 990
MboI	GATC	3 cut(s)	223, 449, 988
MboII	GAAGA	8 cut(s)	19, 118, 159, 338, 391, 530, 567, 772
MluCI	AATT	4 cut(s)	24, 307, 432, 805
MnlI	CCTC	3 cut(s)	549, 794, 797
MseI	TTAA	4 cut(s)	114, 149, 570, 1075
MslI	CAYNNNNRTG	2 cut(s)	846, 874
MspI	CCGG	3 cut(s)	387, 543, 838
MspR9I	CCNGG	3 cut(s)	233, 543, 544
Mva1269I	GAATGC	1 cut(s)	553
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	1010
NciI	CCSGG	2 cut(s)	543, 544
NdeII	GATC	3 cut(s)	223, 449, 988
NlaIII	CATG	3 cut(s)	604, 873, 970
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	604
PciI	ACATGT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	211
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	4 cut(s)	123, 272, 298, 646
PflMI	CCANNNNNTGG	1 cut(s)	972
PkrI	GCNGC	1 cut(s)	944
PscI	ACATGT	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	2 cut(s)	194, 835
PstNI	CAGNNNCTG	1 cut(s)	671
RseI	CAYNNNNRTG	2 cut(s)	846, 874
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	4 cut(s)	114, 149, 570, 1075
SatI	GCNGC	1 cut(s)	943
Sau3AI	GATC	3 cut(s)	223, 449, 988
Sau96I	GGNCC	2 cut(s)	194, 835
ScrFI	CCNGG	3 cut(s)	233, 543, 544
SfaNI	GCATC	1 cut(s)	946
SinI	GGWCC	2 cut(s)	194, 835
SmaI	CCCGGG	1 cut(s)	544
SmiMI	CAYNNNNRTG	2 cut(s)	846, 874
SmlI	CTYRAG	1 cut(s)	1016
SmoI	CTYRAG	1 cut(s)	1016
SpeI	ACTAGT	1 cut(s)	284
Sse9I	AATT	4 cut(s)	24, 307, 432, 805
SsiI	CCGC	2 cut(s)	582, 942
SspI	AATATT	1 cut(s)	979
SspMI	CTAG	2 cut(s)	239, 285
StyD4I	CCNGG	3 cut(s)	231, 541, 542
TaiI	ACGT	4 cut(s)	155, 217, 533, 613
TaqI	TCGA	3 cut(s)	35, 560, 741
TaqII	GACCGA	1 cut(s)	757
TasI	AATT	4 cut(s)	24, 307, 432, 805
TauI	GCSGC	1 cut(s)	945
TfiI	GAWTC	4 cut(s)	123, 272, 298, 646
Tru1I	TTAA	4 cut(s)	114, 149, 570, 1075
Tru9I	TTAA	4 cut(s)	114, 149, 570, 1075
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	9 cut(s)	204, 285, 290, 385, 531, 629, 691, 808, 858
TspMI	CCCGGG	1 cut(s)	542
Van91I	CCANNNNNTGG	1 cut(s)	972
VpaK11BI	GGWCC	2 cut(s)	194, 835
XapI	RAATTY	1 cut(s)	805
XceI	RCATGY	1 cut(s)	604
XmaI	CCCGGG	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	605
XspI	CTAG	2 cut(s)	239, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.