Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Reverse (-)

5472090 .. 5474002

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08240.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACTGCGGATACAACTGATGCGAGTTATTGGTTGAATTGGAGGTTTCTCATTTGTGCAATATGGATCTTATCTACTATGGTTGTAGCCTCAGTTCTTATATGGAAATATGAAGGTTTCAAAAAATCGAGAACGGGCAGGAGAGCAGTGGATCAGCGAGAAACGGTAGGGACTTTGTACGAGGATGAAGCCTGGAAGACGTGTCTTAAAGGAATACATCCCGCGTGGTTACTTGCTTATAGAATAATTGCTTTTGTTGTGATGTTGGGGTTGATAGTTGCTAATGTTGCTCTTGATGGAGCCGGCATCTTTTACTTCTATACTCAGTGGACGTTTGTTTTGGTCACATTCTATTTCGGGTATGGATCTTTAGTCTCGCTTCGTGGAATTTATAAGCATCGCAATAGAATTGGTGAGGATGAAGAGCGAGGCGCTTACGTTGCTCCAGCACTAGGGGAGAATGGCAATACGTCCAATGGATCTAAAAGTCTTACTCATGAAGAATATCATGGCCGCAAAGGTGCAGGTGCATGCGAATACATCTTTCAAATTATTTATCAGATGTGTGGAGGTGCTGTCGCTATCACTGATTGCATATTTTGGCTTGTTCTGTATCCATTTCTAACATCCAAAGACTACAAACTGAATTTTATGATGGTCATAATGCACTCAGTCAATGCCCCTTTCCTCCTTGGTGAGGCATTTTTGAATAACATGCGGTTTCCATTGTTTCGAATCGCATATTTTGTGCTGTGGACGGGAGTATTCGTGATTTTTCAGTGGATATTCCATGCTTGCAAATCCATGTGGTGGCCTTATCCATTTCTCGACCTGTCATCCTTGTATGCTCCCTTATGGTATCTTGGGGTTGGATTGATGCATCTCCCGTGCTACGGCGTCTTTGCTCTAATTGTTAGGATAAAGAACTTGCTGTTGTCAAGAGCATTTCCGGAGTCTTATCAGAACGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

325

Amino Acids

37.36

Weight (kDa)

8.72

Isoelectric Point (pI)

26.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	515
AccB7I	CCANNNNNTGG	1 cut(s)	810
AccII	CGCG	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	949
AciI	CCGC	4 cut(s)	8, 222, 514, 718
AclWI	GGATC	4 cut(s)	74, 159, 373, 487
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	2 cut(s)	387, 646
AcyI	GRCGYC	1 cut(s)	897
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	4 cut(s)	452, 697, 810, 893
AflIII	ACRYGT	1 cut(s)	200
AgsI	TTSAA	4 cut(s)	37, 121, 548, 709
AjiI	CACGTC	1 cut(s)	201
AjnI	CCWGG	1 cut(s)	191
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	4 cut(s)	74, 159, 373, 487
Aor13HI	TCCGGA	1 cut(s)	949
AoxI	GGCC	2 cut(s)	511, 812
ApoI	RAATTY	2 cut(s)	387, 646
ArsI	GACNNNNNNTTYG	2 cut(s)	322, 354
AspLEI	GCGC	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	425, 707
AsuII	TTCGAA	1 cut(s)	733
BbsI	GAAGAC	1 cut(s)	203
BccI	CCATC	2 cut(s)	290, 649
BceAI	ACGGC	1 cut(s)	910
BciT130I	CCWGG	1 cut(s)	193
BciVI	GTATCC	2 cut(s)	4, 624
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	1 cut(s)	452
BfoI	RGCGCY	1 cut(s)	435
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	2 cut(s)	4, 624
BisI	GCNGC	1 cut(s)	514
BlsI	GCNGC	1 cut(s)	515
Bme1390I	CCNGG	1 cut(s)	193
BmgBI	CACGTC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	5 cut(s)	10, 315, 406, 867, 889
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	733
BsaHI	GRCGYC	1 cut(s)	897
BsaJI	CCNNGG	1 cut(s)	691
BsaWI	WCCGGW	1 cut(s)	949
BsaXI	ACNNNNNCTCC	4 cut(s)	561, 591, 753, 783
Bsc4I	CCNNNNNNNGG	4 cut(s)	452, 697, 810, 893
Bse118I	RCCGGY	1 cut(s)	302
BseAI	TCCGGA	1 cut(s)	949
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	691
BseGI	GGATG	5 cut(s)	190, 217, 424, 626, 836
BseLI	CCNNNNNNNGG	4 cut(s)	452, 697, 810, 893
BseMII	CTCAG	3 cut(s)	105, 338, 684
BsgI	GTGCAG	1 cut(s)	543
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	2 cut(s)	513, 814
BsiSI	CCGG	2 cut(s)	303, 950
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	4 cut(s)	452, 697, 810, 893
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	513, 814
Bsp119I	TTCGAA	1 cut(s)	733
Bsp13I	TCCGGA	1 cut(s)	949
Bsp143I	GATC	4 cut(s)	66, 151, 365, 479
BspACI	CCGC	4 cut(s)	8, 222, 514, 718
BspANI	GGCC	2 cut(s)	513, 814
BspCNI	CTCAG	3 cut(s)	104, 337, 683
BspEI	TCCGGA	1 cut(s)	949
BspFNI	CGCG	1 cut(s)	224
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	4 cut(s)	74, 159, 373, 487
BspQI	GCTCTTC	1 cut(s)	417
BspT104I	TTCGAA	1 cut(s)	733
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	691
BssMI	GATC	4 cut(s)	66, 151, 365, 479
BssNI	GRCGYC	1 cut(s)	897
BssT1I	CCWWGG	1 cut(s)	691
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	1 cut(s)	897
BstBI	TTCGAA	1 cut(s)	733
BstC8I	GCNNGC	3 cut(s)	304, 532, 796
BstDEI	CTNAG	3 cut(s)	91, 324, 670
BstENI	CCTNNNNNAGG	1 cut(s)	695
BstF5I	GGATG	5 cut(s)	190, 217, 424, 626, 836
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	4 cut(s)	69, 154, 368, 482
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	4 cut(s)	66, 151, 365, 479
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 440
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	2 cut(s)	534, 718
BstSCI	CCNGG	1 cut(s)	191
BstUI	CGCG	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	3 cut(s)	66, 365, 479
BstYI	RGATCY	3 cut(s)	66, 365, 479
BsuI	GTATCC	2 cut(s)	4, 624
BsuRI	GGCC	2 cut(s)	513, 814
BtgZI	GCGATG	1 cut(s)	383
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	5 cut(s)	190, 217, 424, 626, 836
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	4 cut(s)	153, 332, 585, 785
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	3 cut(s)	304, 532, 796
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	1 cut(s)	434
Cfr10I	RCCGGY	1 cut(s)	302
CseI	GACGC	1 cut(s)	886
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	6 cut(s)	497, 509, 531, 715, 791, 805
CviJI	RGCY	6 cut(s)	89, 191, 302, 513, 604, 814
CviKI_1	RGCY	6 cut(s)	89, 191, 302, 513, 604, 814
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	3 cut(s)	91, 324, 670
DpnI	GATC	4 cut(s)	68, 153, 367, 481
DpnII	GATC	4 cut(s)	66, 151, 365, 479
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	691
EcoNI	CCTNNNNNAGG	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	691
EcoT22I	ATGCAT	1 cut(s)	882
ErhI	CCWWGG	1 cut(s)	691
FaeI	CATG	6 cut(s)	500, 512, 534, 718, 794, 808
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	6 cut(s)	496, 508, 530, 714, 790, 804
FauI	CCCGC	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	514
FokI	GGATG	5 cut(s)	197, 204, 431, 613, 823
Fsp4HI	GCNGC	1 cut(s)	514
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	1 cut(s)	514
GsuI	CTGGAG	1 cut(s)	429
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	513, 814
HapII	CCGG	2 cut(s)	303, 950
HgaI	GACGC	1 cut(s)	886
HhaI	GCGC	1 cut(s)	434
Hin1I	GRCGYC	1 cut(s)	897
Hin1II	CATG	6 cut(s)	500, 512, 534, 718, 794, 808
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	2 cut(s)	735, 953
HpaII	CCGG	2 cut(s)	303, 950
HphI	GGTGA	2 cut(s)	425, 707
Hpy166II	GTNNAC	2 cut(s)	330, 756
Hpy188I	TCNGA	2 cut(s)	561, 963
Hpy188III	TCNNGA	7 cut(s)	129, 293, 497, 769, 827, 939, 950
Hpy8I	GTNNAC	2 cut(s)	330, 756
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	4 cut(s)	200, 332, 438, 470
HpyCH4V	TGCA	7 cut(s)	59, 524, 530, 594, 667, 798, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 440
HpyF3I	CTNAG	3 cut(s)	91, 324, 670
HpySE526I	ACGT	4 cut(s)	200, 332, 438, 470
Hsp92I	GRCGYC	1 cut(s)	897
Hsp92II	CATG	6 cut(s)	500, 512, 534, 718, 794, 808
HspAI	GCGC	1 cut(s)	432
Kpn2I	TCCGGA	1 cut(s)	949
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	66, 151, 365, 479
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	3 cut(s)	299, 448, 853
LpnPI	CCDG	8 cut(s)	124, 178, 205, 316, 459, 510, 845, 963
LweI	GCATC	5 cut(s)	10, 315, 406, 867, 889
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	4 cut(s)	200, 332, 438, 470
MaeIII	GTNAC	2 cut(s)	228, 343
MalI	GATC	4 cut(s)	68, 153, 367, 481
MboI	GATC	4 cut(s)	66, 151, 365, 479
MboII	GAAGA	3 cut(s)	208, 434, 512
MflI	RGATCY	3 cut(s)	66, 365, 479
MluCI	AATT	7 cut(s)	37, 246, 387, 408, 549, 646, 909
MlyI	GAGTC	1 cut(s)	962
MmeI	TCCRAC	1 cut(s)	850
MnlI	CCTC	8 cut(s)	36, 100, 175, 409, 422, 563, 691, 698
Mph1103I	ATGCAT	1 cut(s)	882
MroI	TCCGGA	1 cut(s)	949
MroNI	GCCGGC	1 cut(s)	302
MseI	TTAA	1 cut(s)	207
MspI	CCGG	2 cut(s)	303, 950
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	2 cut(s)	287, 440
NaeI	GCCGGC	1 cut(s)	304
NdeII	GATC	4 cut(s)	66, 151, 365, 479
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	6 cut(s)	500, 512, 534, 718, 794, 808
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	343
NsiI	ATGCAT	1 cut(s)	882
NspI	RCATGY	2 cut(s)	534, 718
NspV	TTCGAA	1 cut(s)	733
PaeI	GCATGC	1 cut(s)	534
PagI	TCATGA	1 cut(s)	496
PaqCI	CACCTGC	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	417
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	735
PflMI	CCANNNNNTGG	1 cut(s)	810
PkrI	GCNGC	1 cut(s)	515
PleI	GAGTC	1 cut(s)	961
PpsI	GAGTC	1 cut(s)	961
PsiI	TTATAA	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	301
PsrI	GAACNNNNNNTAC	2 cut(s)	78, 110
PsuI	RGATCY	3 cut(s)	66, 365, 479
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	514
Sau3AI	GATC	4 cut(s)	66, 151, 365, 479
SchI	GAGTC	1 cut(s)	962
ScrFI	CCNGG	1 cut(s)	193
SfaNI	GCATC	5 cut(s)	10, 315, 406, 867, 889
SfuI	TTCGAA	1 cut(s)	733
SphI	GCATGC	1 cut(s)	534
Sse9I	AATT	7 cut(s)	37, 246, 387, 408, 549, 646, 909
SsiI	CCGC	4 cut(s)	8, 222, 514, 718
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	691
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	4 cut(s)	203, 335, 441, 473
TaqI	TCGA	3 cut(s)	128, 733, 828
TasI	AATT	7 cut(s)	37, 246, 387, 408, 549, 646, 909
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	1 cut(s)	735
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	4 cut(s)	153, 332, 592, 785
TseFI	GTSAC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	4 cut(s)	126, 201, 435, 513
TspRI	CASTG	4 cut(s)	153, 332, 592, 785
Van91I	CCANNNNNTGG	1 cut(s)	810
XagI	CCTNNNNNAGG	1 cut(s)	695
XapI	RAATTY	2 cut(s)	387, 646
XceI	RCATGY	2 cut(s)	534, 718
XspI	CTAG	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.