Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Reverse (-)

6650224 .. 6652752

Gene Structure 2529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1095700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGACTGCGGATACGACTGATCCGAGTTATTGGTTGAATTGGAGGTTTCTCGTTTGTGCAGTATGGATCTTATCTACCATCGTTGCAGCCTCAATTCTTATATGGAAATACGAAGGTTTCAAAAAATCAACAACGGGGAGGAGAACAGAAGATGAGCGAGAAGCGGTGGGGGCTTTGTACGAGGGTGAAGTCTGGAAGACGTGCCTTAAGGGAATTCATCCCGCGTGGTTACTTGCTTATAGAGTAATCGCTTTCTTTGTGATGTTGGGGTTGATAGTTGCCAATGTTGCTCTTGACGGAGGCGGCATCTTTTACTATTATACTCAGTGGACGTTTGCTTTGGTCACATTCTATTTCGGGTTTGGATCTTCAGTCTCGCTTTGCGGAATTTATAAGCATCGCAATAGGATTGGTGAGGATGAAGAGCGAGGCGCTTATGTTGCTCCGACACTAGGGGAGAGTGGCAATACGTTCAGTGGATCTAAAAGACTTACTCATGAAGAATATCCCGGCCGCGAAGGTGCAGGTGCATGCGAATACATCTTTCAAATTATTTATCAGATGTGTGGAGGTGCCGCGGTTCTCACTGATTGCGTATATTGGCTCATTCTGTCCAAATCTGACACACTGGATTTTATGCTGGTCAGTATGCACTCGGTCAATGCCGTTTTCCTCCTTGGCGAGGCAGTTTTGAATAACATGCGGTTTCCATTGTTCCGAATCGCATATTTTGTGCTGTGGACGGGAGTGTTCGTGATTTTCCAGTGGATATTCCATGCTTTCAAATCCATGGCGTGGCCTTATTCATTTCTCGACCTCTCATCCTCGTACGCTCCCTTATGGTATATTGGGATTGGATTGATGCATCTCCCATGCTACGGCTTCTTTGCTTTTATAATTAGGATGAAGAACTTGCTGTTGTCAAGAGCGTTTCCGGAGTCTTATCAGAGCGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

36.42

Weight (kDa)

6.59

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	393, 896
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	572
AccB7I	CCANNNNNTGG	1 cut(s)	795
AccII	CGCG	3 cut(s)	224, 516, 578
AccIII	TCCGGA	1 cut(s)	934
AciI	CCGC	9 cut(s)	8, 164, 222, 303, 384, 514, 576, 578, 703
AclWI	GGATC	4 cut(s)	14, 74, 373, 487
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	2 cut(s)	213, 387
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	2 cut(s)	179, 830
AfiI	CCNNNNNNNGG	4 cut(s)	452, 682, 795, 878
AflII	CTTAAG	1 cut(s)	206
AgsI	TTSAA	5 cut(s)	37, 121, 548, 694, 784
AjiI	CACGTC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	4 cut(s)	14, 74, 373, 487
Aor13HI	TCCGGA	1 cut(s)	934
AoxI	GGCC	2 cut(s)	511, 797
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	213, 387
ArsI	GACNNNNNNTTYG	2 cut(s)	322, 354
AspLEI	GCGC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	2 cut(s)	197, 425
BanI	GGYRCC	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	2 cut(s)	650, 895
BciVI	GTATCC	1 cut(s)	4
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	1 cut(s)	452
BfoI	RGCGCY	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	4
BisI	GCNGC	4 cut(s)	87, 304, 514, 576
BlsI	GCNGC	4 cut(s)	88, 305, 515, 577
Bme1390I	CCNGG	1 cut(s)	510
BmgBI	CACGTC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	574
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	4 cut(s)	315, 406, 852, 874
BpiI	GAAGAC	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	576, 676, 789
BsaWI	WCCGGW	1 cut(s)	934
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	4 cut(s)	452, 682, 795, 878
Bse1I	ACTGG	2 cut(s)	633, 763
BseAI	TCCGGA	1 cut(s)	934
BseDI	CCNNGG	3 cut(s)	576, 676, 789
BseGI	GGATG	4 cut(s)	217, 424, 821, 909
BseLI	CCNNNNNNNGG	4 cut(s)	452, 682, 795, 878
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	633, 763
BseRI	GAGGAG	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	511
BseXI	GCAGC	1 cut(s)	98
BsgI	GTGCAG	2 cut(s)	78, 543
Bsh1236I	CGCG	3 cut(s)	224, 516, 578
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	2 cut(s)	513, 799
BshNI	GGYRCC	1 cut(s)	572
BsiEI	CGRYCG	1 cut(s)	514
BsiSI	CCGG	2 cut(s)	510, 935
BsiWI	CGTACG	1 cut(s)	828
BslI	CCNNNNNNNGG	4 cut(s)	452, 682, 795, 878
BsmAI	GTCTC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	513, 799
Bsp13I	TCCGGA	1 cut(s)	934
Bsp143I	GATC	4 cut(s)	19, 66, 365, 479
Bsp19I	CCATGG	1 cut(s)	789
BspACI	CCGC	9 cut(s)	8, 164, 222, 303, 384, 514, 576, 578, 703
BspANI	GGCC	2 cut(s)	513, 799
BspCNI	CTCAG	1 cut(s)	337
BspEI	TCCGGA	1 cut(s)	934
BspFNI	CGCG	3 cut(s)	224, 516, 578
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	574
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	4 cut(s)	14, 74, 373, 487
BspQI	GCTCTTC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	572
BspTI	CTTAAG	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	633, 763
BssECI	CCNNGG	3 cut(s)	576, 676, 789
BssMI	GATC	4 cut(s)	19, 66, 365, 479
BssT1I	CCWWGG	2 cut(s)	676, 789
Bst6I	CTCTTC	1 cut(s)	417
BstAFI	CTTAAG	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	2 cut(s)	576, 789
BstENI	CCTNNNNNAGG	1 cut(s)	680
BstF5I	GGATG	4 cut(s)	217, 424, 821, 909
BstFNI	CGCG	3 cut(s)	224, 516, 578
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	4 cut(s)	22, 69, 368, 482
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	4 cut(s)	19, 66, 365, 479
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 287, 440
BstNSI	RCATGY	2 cut(s)	534, 703
BstSCI	CCNGG	1 cut(s)	508
BstUI	CGCG	3 cut(s)	224, 516, 578
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	3 cut(s)	66, 365, 479
BstYI	RGATCY	3 cut(s)	66, 365, 479
BstZI	CGGCCG	1 cut(s)	511
BsuI	GTATCC	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	513, 799
BtgI	CCRYGG	2 cut(s)	576, 789
BtgZI	GCGATG	1 cut(s)	383
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	4 cut(s)	217, 424, 821, 909
BtsIMutI	CAGTG	5 cut(s)	332, 481, 585, 626, 770
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	532
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	1 cut(s)	434
Cfr42I	CCGCGG	1 cut(s)	579
Csp6I	GTAC	2 cut(s)	178, 829
CviAII	CATG	6 cut(s)	497, 531, 700, 776, 790, 873
CviJI	RGCY	6 cut(s)	89, 173, 513, 604, 799, 882
CviKI_1	RGCY	6 cut(s)	89, 173, 513, 604, 799, 882
CviQI	GTAC	2 cut(s)	178, 829
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	4 cut(s)	21, 68, 367, 481
DpnII	GATC	4 cut(s)	19, 66, 365, 479
EaeI	YGGCCR	1 cut(s)	511
EagI	CGGCCG	1 cut(s)	511
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
EclXI	CGGCCG	1 cut(s)	511
Eco130I	CCWWGG	2 cut(s)	676, 789
Eco52I	CGGCCG	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	354
EcoNI	CCTNNNNNAGG	1 cut(s)	680
EcoRI	GAATTC	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	676, 789
EcoT22I	ATGCAT	1 cut(s)	867
ErhI	CCWWGG	2 cut(s)	676, 789
FaeI	CATG	6 cut(s)	500, 534, 703, 779, 793, 876
FatI	CATG	6 cut(s)	496, 530, 699, 775, 789, 872
FauI	CCCGC	1 cut(s)	229
Fnu4HI	GCNGC	4 cut(s)	87, 304, 514, 576
FokI	GGATG	4 cut(s)	204, 431, 808, 916
Fsp4HI	GCNGC	4 cut(s)	87, 304, 514, 576
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	4 cut(s)	87, 304, 514, 576
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	513, 799
HapII	CCGG	2 cut(s)	510, 935
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	6 cut(s)	500, 534, 703, 779, 793, 876
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	2 cut(s)	720, 938
HpaII	CCGG	2 cut(s)	510, 935
HphI	GGTGA	2 cut(s)	197, 425
Hpy166II	GTNNAC	2 cut(s)	330, 741
Hpy188I	TCNGA	6 cut(s)	24, 447, 561, 622, 719, 948
Hpy188III	TCNNGA	7 cut(s)	193, 293, 497, 754, 812, 924, 935
Hpy8I	GTNNAC	2 cut(s)	330, 741
HpyAV	CCTTC	2 cut(s)	107, 512
HpyCH4IV	ACGT	3 cut(s)	200, 332, 470
HpyCH4V	TGCA	6 cut(s)	59, 86, 524, 530, 652, 865
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 287, 440
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	3 cut(s)	200, 332, 470
Hsp92II	CATG	6 cut(s)	500, 534, 703, 779, 793, 876
HspAI	GCGC	1 cut(s)	432
Kpn2I	TCCGGA	1 cut(s)	934
KspI	CCGCGG	1 cut(s)	579
Kzo9I	GATC	4 cut(s)	19, 66, 365, 479
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	448, 838
LpnPI	CCDG	7 cut(s)	178, 510, 523, 614, 626, 776, 948
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	4 cut(s)	315, 406, 852, 874
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	3 cut(s)	200, 332, 470
MaeIII	GTNAC	2 cut(s)	228, 343
MalI	GATC	4 cut(s)	21, 68, 367, 481
MboI	GATC	4 cut(s)	19, 66, 365, 479
MboII	GAAGA	6 cut(s)	161, 208, 360, 434, 512, 919
MflI	RGATCY	3 cut(s)	66, 365, 479
MluCI	AATT	6 cut(s)	37, 93, 213, 387, 549, 897
MlyI	GAGTC	1 cut(s)	947
MmeI	TCCRAC	1 cut(s)	470
Mph1103I	ATGCAT	1 cut(s)	867
MroI	TCCGGA	1 cut(s)	934
MseI	TTAA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	578
MspCI	CTTAAG	1 cut(s)	206
MspI	CCGG	2 cut(s)	510, 935
MspR9I	CCNGG	1 cut(s)	510
MvnI	CGCG	3 cut(s)	224, 516, 578
MwoI	GCNNNNNNNGC	3 cut(s)	170, 287, 440
NciI	CCSGG	1 cut(s)	510
NcoI	CCATGG	1 cut(s)	789
NdeII	GATC	4 cut(s)	19, 66, 365, 479
NlaIII	CATG	6 cut(s)	500, 534, 703, 779, 793, 876
NlaIV	GGNNCC	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	343
NsiI	ATGCAT	1 cut(s)	867
NspI	RCATGY	2 cut(s)	534, 703
PaeI	GCATGC	1 cut(s)	534
PagI	TCATGA	1 cut(s)	496
PaqCI	CACCTGC	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	720
Pfl23II	CGTACG	1 cut(s)	828
PflMI	CCANNNNNTGG	1 cut(s)	795
PkrI	GCNGC	4 cut(s)	88, 305, 515, 577
PleI	GAGTC	1 cut(s)	946
PpsI	GAGTC	1 cut(s)	946
PsiI	TTATAA	2 cut(s)	393, 896
PspLI	CGTACG	1 cut(s)	828
PspN4I	GGNNCC	1 cut(s)	574
PsuI	RGATCY	3 cut(s)	66, 365, 479
RsaI	GTAC	2 cut(s)	179, 830
RsaNI	GTAC	2 cut(s)	178, 829
SacII	CCGCGG	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	4 cut(s)	87, 304, 514, 576
Sau3AI	GATC	4 cut(s)	19, 66, 365, 479
SchI	GAGTC	1 cut(s)	947
ScrFI	CCNGG	1 cut(s)	510
SetI	ASST	9 cut(s)	47, 118, 203, 335, 473, 523, 529, 574, 819
SfaNI	GCATC	4 cut(s)	315, 406, 852, 874
Sfr303I	CCGCGG	1 cut(s)	579
SgrBI	CCGCGG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SphI	GCATGC	1 cut(s)	534
Sse9I	AATT	6 cut(s)	37, 93, 213, 387, 549, 897
SsiI	CCGC	9 cut(s)	8, 164, 222, 303, 384, 514, 576, 578, 703
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	2 cut(s)	676, 789
TaiI	ACGT	3 cut(s)	203, 335, 473
TaqI	TCGA	1 cut(s)	813
TaqII	GACCGA	1 cut(s)	646
TasI	AATT	6 cut(s)	37, 93, 213, 387, 549, 897
TauI	GCSGC	3 cut(s)	306, 516, 578
TfiI	GAWTC	1 cut(s)	720
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	5 cut(s)	332, 481, 592, 633, 770
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	5 cut(s)	206, 435, 513, 795, 920
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	5 cut(s)	332, 481, 592, 633, 770
Van91I	CCANNNNNTGG	1 cut(s)	795
Vha464I	CTTAAG	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	680
XapI	RAATTY	2 cut(s)	213, 387
XceI	RCATGY	2 cut(s)	534, 703
XspI	CTAG	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.