Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Reverse (-)

31324966 .. 31326880

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32871.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGATTCTGATTCTGATGTGGATACGACTGAACCAAGTTATTGGTGGAACCGGAGGTTCTTGCTCAGTTCACTATTTGTATTGACTACTGTGATTGTAGCAGCAATTTGTATATGGAAATATGAGGGCCGCAGAAGGGAAAGAGGAGCAAATCATCAGGGCAAAACAGTAGGGTTTTTATATGAGGATGAAGCCTGGAATACATCTTTCAAAGTGATTCATCCTGCTTGGCTTCTTGCGTACAGAATCATTGCTTTCGGTGTGCTTCTGTCCGTGATAGTTATGAATTATGTTGATGATGGACCTGGGATATTTTTGTTCTATACTCAGTGCACATTTTGTTTGGTCACAATCTATTTCGCGGTTGGATCTTCACTTTCCATTTACGGATGCTACAAATACCACAATAGAGTTAGTGATGATCCAGCTGATGATGTGAGAGATGATGAAGAGCAAAGTATTTCTGTTGCTCCAGCACTTGCCGAAAATGCCGACGCAACCAACACGTCTAAAAGATTTACTTTCGAAGAATGTTTCTCCCTCGAAGACACAACCAACACGTCTAAAAGATTTACTGATGAAAAAGGTTCCTCCCGCAAACCCGCAGGAGTATGCGTTTATATCTTTCAAGCCCTTTATCAGATGTGTGGGGGTGCTGTGGTGCTCACTGATCTTATATTTTGGGGCCTTTTGTATCCATTTGTTTGGGACCCCGATTATGACGAACTAGACTATTTGATGATCAGTTTGCACGTATACAATTTTGTTTTCCTTCTTGGTGACACAGCTTTGAATAGCATGAGGTTTCCAATGTTTCGAATCGCATATTTCATGCTGTGGACGATAACATATGTGATTGTGCAATGGATAGTCCACGCTTGTGTGGATCTCTGGTGGCCTTATCCATTTCTTAGCTTGGCATCCACATATGCGCCCTTATGGTATCTTTTGGTTGGACTGGTGCATATCCCATGCTACTGCGGCTATGCTTTAATTGTTAAATTGAAGCATTTGTGGTTCACAAGATTCTTCCCGAAGTCCTTTCAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

40.5

Weight (kDa)

5.15

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	756
AccII	CGCG	1 cut(s)	362
AciI	CCGC	5 cut(s)	130, 362, 595, 603, 981
AclWI	GGATC	3 cut(s)	376, 416, 894
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	136, 1047
AflIII	ACRYGT	2 cut(s)	504, 558
AgsI	TTSAA	4 cut(s)	211, 629, 793, 1006
AjiI	CACGTC	2 cut(s)	507, 561
AjnI	CCWGG	2 cut(s)	194, 304
AleI	CACNNNNGTG	1 cut(s)	879
AluBI	AGCT	3 cut(s)	428, 788, 915
AluI	AGCT	3 cut(s)	428, 788, 915
Alw21I	GWGCWC	2 cut(s)	335, 666
Alw44I	GTGCAC	1 cut(s)	331
AlwI	GGATC	3 cut(s)	376, 416, 894
AoxI	GGCC	3 cut(s)	127, 685, 896
ApaLI	GTGCAC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	934
AspS9I	GGNCC	4 cut(s)	127, 302, 685, 709
AsuHPI	GGTGA	1 cut(s)	791
AsuII	TTCGAA	2 cut(s)	525, 817
AvaII	GGWCC	2 cut(s)	302, 709
BaeGI	GKGCMC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	2 cut(s)	335, 666
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	293
BciT130I	CCWGG	2 cut(s)	196, 306
BciVI	GTATCC	2 cut(s)	16, 705
BclI	TGATCA	1 cut(s)	741
BfaI	CTAG	1 cut(s)	728
BfuI	GTATCC	2 cut(s)	16, 705
BisI	GCNGC	3 cut(s)	102, 130, 982
BlsI	GCNGC	3 cut(s)	103, 131, 983
Bme1390I	CCNGG	2 cut(s)	196, 306
Bme18I	GGWCC	2 cut(s)	302, 709
BmgBI	CACGTC	2 cut(s)	507, 561
BmgT120I	GGNCC	4 cut(s)	127, 302, 685, 709
BmiI	GGNNCC	5 cut(s)	50, 589, 686, 710, 711
BmrFI	CCNGG	2 cut(s)	196, 306
BmsI	GCATC	2 cut(s)	380, 929
BpiI	GAAGAC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	456
Bpu14I	TTCGAA	2 cut(s)	525, 817
BsaAI	YACGTR	1 cut(s)	754
BsaJI	CCNNGG	1 cut(s)	305
BsaWI	WCCGGW	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 1047
Bse1I	ACTGG	1 cut(s)	963
Bse3DI	GCAATG	2 cut(s)	249, 869
BseBI	CCWGG	2 cut(s)	196, 306
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	4 cut(s)	193, 220, 395, 920
BseLI	CCNNNNNNNGG	2 cut(s)	136, 1047
BseMI	GCAATG	2 cut(s)	249, 869
BseMII	CTCAG	2 cut(s)	79, 341
BseNI	ACTGG	1 cut(s)	963
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	3 cut(s)	129, 687, 898
BsiHKAI	GWGCWC	2 cut(s)	335, 666
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	2 cut(s)	136, 1047
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	3 cut(s)	129, 687, 898
Bsp119I	TTCGAA	2 cut(s)	525, 817
Bsp1286I	GDGCHC	2 cut(s)	335, 666
Bsp143I	GATC	5 cut(s)	368, 421, 670, 741, 886
BspACI	CCGC	5 cut(s)	130, 362, 595, 603, 981
BspANI	GGCC	3 cut(s)	129, 687, 898
BspCNI	CTCAG	2 cut(s)	78, 340
BspFNI	CGCG	1 cut(s)	362
BspLI	GGNNCC	5 cut(s)	50, 589, 686, 710, 711
BspPI	GGATC	3 cut(s)	376, 416, 894
BspQI	GCTCTTC	1 cut(s)	444
BspT104I	TTCGAA	2 cut(s)	525, 817
BsrDI	GCAATG	2 cut(s)	249, 869
BsrI	ACTGG	1 cut(s)	963
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	5 cut(s)	368, 421, 670, 741, 886
BssNAI	GTATAC	1 cut(s)	757
Bst1107I	GTATAC	1 cut(s)	757
Bst2UI	CCWGG	2 cut(s)	196, 306
Bst4CI	ACNGT	2 cut(s)	91, 169
Bst6I	CTCTTC	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	754
BstBI	TTCGAA	2 cut(s)	525, 817
BstDEI	CTNAG	3 cut(s)	65, 327, 911
BstF5I	GGATG	4 cut(s)	193, 220, 395, 920
BstFNI	CGCG	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	934
BstKTI	GATC	5 cut(s)	371, 424, 673, 744, 889
BstMBI	GATC	5 cut(s)	368, 421, 670, 741, 886
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 981
BstNI	CCWGG	2 cut(s)	196, 306
BstSCI	CCNGG	2 cut(s)	194, 304
BstSLI	GKGCMC	1 cut(s)	335
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	2 cut(s)	368, 886
BstXI	CCANNNNNNTGG	2 cut(s)	42, 705
BstYI	RGATCY	2 cut(s)	368, 886
BstZ17I	GTATAC	1 cut(s)	757
BsuI	GTATCC	2 cut(s)	16, 705
BsuRI	GGCC	3 cut(s)	129, 687, 898
BtrI	CACGTC	2 cut(s)	507, 561
BtsCI	GGATG	4 cut(s)	193, 220, 395, 920
BtsIMutI	CAGTG	2 cut(s)	335, 666
CfoI	GCGC	1 cut(s)	934
Cfr13I	GGNCC	4 cut(s)	127, 302, 685, 709
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	3 cut(s)	799, 832, 972
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	3 cut(s)	65, 327, 911
DpnI	GATC	5 cut(s)	370, 423, 672, 743, 888
DpnII	GATC	5 cut(s)	368, 421, 670, 741, 886
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	302, 709
EcoO109I	RGGNCCY	2 cut(s)	685, 709
EcoRII	CCWGG	2 cut(s)	194, 304
FaeI	CATG	3 cut(s)	802, 835, 975
FalI	AAGNNNNNCTT	2 cut(s)	505, 537
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	3 cut(s)	798, 831, 971
FauI	CCCGC	2 cut(s)	602, 610
FauNDI	CATATG	2 cut(s)	850, 928
FbaI	TGATCA	1 cut(s)	741
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	3 cut(s)	102, 130, 982
FokI	GGATG	4 cut(s)	200, 207, 402, 907
Fsp4HI	GCNGC	3 cut(s)	102, 130, 982
FspBI	CTAG	1 cut(s)	728
GlaI	GCGC	1 cut(s)	933
GluI	GCNGC	3 cut(s)	102, 130, 982
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	129, 687, 898
HapII	CCGG	1 cut(s)	52
HgaI	GACGC	1 cut(s)	503
HhaI	GCGC	1 cut(s)	934
Hin1II	CATG	3 cut(s)	802, 835, 975
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HinfI	GANTC	6 cut(s)	5, 11, 217, 246, 819, 1026
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	791
Hpy166II	GTNNAC	6 cut(s)	71, 333, 757, 840, 874, 1020
Hpy188I	TCNGA	3 cut(s)	10, 16, 642
Hpy188III	TCNNGA	1 cut(s)	1033
Hpy8I	GTNNAC	6 cut(s)	71, 333, 757, 840, 874, 1020
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	2 cut(s)	129, 782
HpyCH4III	ACNGT	2 cut(s)	91, 169
HpyCH4IV	ACGT	3 cut(s)	506, 560, 753
HpyCH4V	TGCA	4 cut(s)	333, 751, 862, 964
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 981
HpyF3I	CTNAG	3 cut(s)	65, 327, 911
HpySE526I	ACGT	3 cut(s)	506, 560, 753
Hsp92II	CATG	3 cut(s)	802, 835, 975
HspAI	GCGC	1 cut(s)	932
KflI	GGGWCCC	1 cut(s)	709
Ksp22I	TGATCA	1 cut(s)	741
Kzo9I	GATC	5 cut(s)	368, 421, 670, 741, 886
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	2 cut(s)	146, 475
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	2 cut(s)	380, 929
MaeI	CTAG	1 cut(s)	728
MaeII	ACGT	3 cut(s)	506, 560, 753
MaeIII	GTNAC	2 cut(s)	346, 779
MalI	GATC	5 cut(s)	370, 423, 672, 743, 888
MboI	GATC	5 cut(s)	368, 421, 670, 741, 886
MboII	GAAGA	5 cut(s)	363, 461, 539, 557, 1021
MflI	RGATCY	2 cut(s)	368, 886
MhlI	GDGCHC	2 cut(s)	335, 666
MluCI	AATT	5 cut(s)	105, 286, 760, 993, 1001
MmeI	TCCRAC	2 cut(s)	346, 934
MnlI	CCTC	7 cut(s)	48, 118, 137, 178, 551, 601, 795
MseI	TTAA	2 cut(s)	992, 999
MslI	CAYNNNNRTG	1 cut(s)	879
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	2 cut(s)	196, 306
MvaI	CCWGG	2 cut(s)	196, 306
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	488, 981
NdeI	CATATG	2 cut(s)	850, 928
NdeII	GATC	5 cut(s)	368, 421, 670, 741, 886
NlaIII	CATG	3 cut(s)	802, 835, 975
NlaIV	GGNNCC	5 cut(s)	50, 589, 686, 710, 711
NmuCI	GTSAC	2 cut(s)	346, 779
NspV	TTCGAA	2 cut(s)	525, 817
OliI	CACNNNNGTG	1 cut(s)	879
PciSI	GCTCTTC	1 cut(s)	444
PfeI	GAWTC	6 cut(s)	5, 11, 217, 246, 819, 1026
PkrI	GCNGC	3 cut(s)	103, 131, 983
Ppu21I	YACGTR	1 cut(s)	754
PpuMI	RGGWCCY	1 cut(s)	709
Psp5II	RGGWCCY	1 cut(s)	709
Psp6I	CCWGG	2 cut(s)	194, 304
PspGI	CCWGG	2 cut(s)	194, 304
PspN4I	GGNNCC	5 cut(s)	50, 589, 686, 710, 711
PspPI	GGNCC	4 cut(s)	127, 302, 685, 709
PspPPI	RGGWCCY	1 cut(s)	709
PsuI	RGATCY	2 cut(s)	368, 886
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	879
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	992, 999
SatI	GCNGC	3 cut(s)	102, 130, 982
Sau3AI	GATC	5 cut(s)	368, 421, 670, 741, 886
Sau96I	GGNCC	4 cut(s)	127, 302, 685, 709
ScrFI	CCNGG	2 cut(s)	196, 306
SduI	GDGCHC	2 cut(s)	335, 666
SfaNI	GCATC	2 cut(s)	380, 929
SfuI	TTCGAA	2 cut(s)	525, 817
SinI	GGWCC	2 cut(s)	302, 709
SmiMI	CAYNNNNRTG	1 cut(s)	879
Sse9I	AATT	5 cut(s)	105, 286, 760, 993, 1001
SsiI	CCGC	5 cut(s)	130, 362, 595, 603, 981
SspMI	CTAG	1 cut(s)	728
StyD4I	CCNGG	2 cut(s)	194, 304
TaaI	ACNGT	2 cut(s)	91, 169
TaiI	ACGT	3 cut(s)	509, 563, 756
TaqI	TCGA	3 cut(s)	525, 543, 817
TasI	AATT	5 cut(s)	105, 286, 760, 993, 1001
TauI	GCSGC	2 cut(s)	132, 984
TfiI	GAWTC	6 cut(s)	5, 11, 217, 246, 819, 1026
Tru1I	TTAA	2 cut(s)	992, 999
Tru9I	TTAA	2 cut(s)	992, 999
TscAI	CASTG	2 cut(s)	335, 673
TseFI	GTSAC	2 cut(s)	346, 779
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	2 cut(s)	346, 779
TspDTI	ATGAA	6 cut(s)	204, 209, 299, 462, 594, 820
TspGWI	ACGGA	2 cut(s)	262, 402
TspRI	CASTG	2 cut(s)	335, 673
VneI	GTGCAC	1 cut(s)	331
VpaK11BI	GGWCC	2 cut(s)	302, 709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	756
XspI	CTAG	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.