Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Forward (+)

82411654 .. 82415504

Gene Structure 3851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG480200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGTTTCTTAACAGGATCATCGAGCCATTCGTGGCATCCAGTCATGACCACGGATACTAATGTTCTAAGCTATTGGAATAACTGGAGGTTCTTGATCTGTGCAATATTTATATTGAGTAGTATCGTGCTAGCCGCAGTTCTTATATGGAAATATGAAGGCTGCAAAAAATCCAGAAGGGAAAGAAGAGAAAATCAGCGCGAAACAGTAGGATCTCTATATGAGGATGAAGCCTGGAGGACATCTCTCAAAGTAATTCATCCCGCTTGGCTTCTTGCTTACAGATTAATTGCTTTCGTTGTGCTTCTATCCTTGATAGTTACCAATATGGTTCTTGATGGAGTTGGCATACTTTACTTCTACACTCAGTGGACATTTTGTTTGGTTACAATCTATTTTGGGCTTGGATCTTCACTCTCCATTTATGGATGCTACAAATACCGCAGTAGAGTTGGTGAGGATGCAGCTGATCATGTGAGAGATGAAGAGCGAGGTACTTATGTTGCTCCAACACTTGGGGAAAATGCAGATACATCCAACACATATAAAAGTTTTACTGATGAAGAATGTCCCTCTCGCAAAGGCGCTGGTGTATATGTTTATATCTTTCAAGTCATTTATCAGATGTGTGGGGGTGCTGTGGTGCTCACAGATGTTATATTTTGGCTCATTTTGTATCCATTTCTAACAAGCAAAGATTACAAACTGAACTTTATGATGGTCAGTATGCACTCATTCAATGTTGTTTTCCTCCTTGGTGAGACAGTATTGAATAGCTTGCGGTTTCCATTGTTTCGGATCTCATATTTTGTGCTATGGACGGGAATATTCGTGATTTTCCAATGGATAATCCATGCTTGTAAAAACATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

33.75

Weight (kDa)

8.1

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	515
AccII	CGCG	1 cut(s)	201
AciI	CCGC	4 cut(s)	135, 264, 442, 781
AclWI	GGATC	4 cut(s)	25, 220, 415, 806
AdeI	CACNNNGTG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	496
AfiI	CCNNNNNNNGG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	867
AgsI	TTSAA	3 cut(s)	611, 739, 772
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	3 cut(s)	72, 467, 777
AluI	AGCT	3 cut(s)	72, 467, 777
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	1 cut(s)	755
AlwI	GGATC	4 cut(s)	25, 220, 415, 806
ApeKI	GCWGC	2 cut(s)	162, 464
ArsI	GACNNNNNNTTYG	2 cut(s)	364, 396
AseI	ATTAAT	1 cut(s)	287
AspLEI	GCGC	2 cut(s)	201, 587
AsuHPI	GGTGA	2 cut(s)	467, 770
AsuNHI	GCTAGC	1 cut(s)	130
BaeI	ACNNNNGTAYC	4 cut(s)	48, 81, 486, 519
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	2 cut(s)	149, 476
BccI	CCATC	2 cut(s)	332, 712
BciT130I	CCWGG	1 cut(s)	235
BciVI	GTATCC	2 cut(s)	49, 687
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	755
BfaI	CTAG	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	588
BfuI	GTATCC	2 cut(s)	49, 687
BisI	GCNGC	3 cut(s)	135, 163, 465
BlsI	GCNGC	3 cut(s)	136, 164, 466
Bme1390I	CCNGG	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	3 cut(s)	46, 419, 451
BmtI	GCTAGC	1 cut(s)	134
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BpmI	CTGGAG	2 cut(s)	106, 256
BsaJI	CCNNGG	2 cut(s)	51, 754
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse1I	ACTGG	2 cut(s)	41, 89
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	51, 754
BseGI	GGATG	6 cut(s)	37, 232, 259, 434, 466, 533
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	41, 89
BseXI	GCAGC	2 cut(s)	149, 476
Bsh1236I	CGCG	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	648
BslFI	GGGAC	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	755
BsmFI	GGGAC	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	6 cut(s)	17, 96, 212, 407, 469, 798
BspACI	CCGC	4 cut(s)	135, 264, 442, 781
BspCNI	CTCAG	1 cut(s)	379
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	45
BspOI	GCTAGC	1 cut(s)	134
BspPI	GGATC	4 cut(s)	25, 220, 415, 806
BspQI	GCTCTTC	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	41, 89
BssECI	CCNNGG	2 cut(s)	51, 754
BssMI	GATC	6 cut(s)	17, 96, 212, 407, 469, 798
BssT1I	CCWWGG	1 cut(s)	754
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	208, 766
Bst6I	CTCTTC	2 cut(s)	181, 480
BstC8I	GCNNGC	2 cut(s)	132, 779
BstDEI	CTNAG	2 cut(s)	68, 366
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	6 cut(s)	37, 232, 259, 434, 466, 533
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	588
BstHHI	GCGC	2 cut(s)	201, 587
BstKTI	GATC	6 cut(s)	20, 99, 215, 410, 472, 801
BstMAI	GTCTC	1 cut(s)	755
BstMBI	GATC	6 cut(s)	17, 96, 212, 407, 469, 798
BstNI	CCWGG	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	871
BstSCI	CCNGG	1 cut(s)	233
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	149, 476
BstX2I	RGATCY	3 cut(s)	212, 407, 798
BstYI	RGATCY	3 cut(s)	212, 407, 798
BsuI	GTATCC	2 cut(s)	49, 687
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	6 cut(s)	37, 232, 259, 434, 466, 533
BtsIMutI	CAGTG	1 cut(s)	374
Cac8I	GCNNGC	2 cut(s)	132, 779
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	2 cut(s)	201, 587
Csp6I	GTAC	1 cut(s)	495
CviAII	CATG	4 cut(s)	46, 473, 854, 868
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	2 cut(s)	68, 366
DpnI	GATC	6 cut(s)	19, 98, 214, 409, 471, 800
DpnII	GATC	6 cut(s)	17, 96, 212, 407, 469, 798
DraIII	CACNNNGTG	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	181, 480
EarI	CTCTTC	2 cut(s)	181, 480
Eco130I	CCWWGG	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	754
ErhI	CCWWGG	1 cut(s)	754
FaeI	CATG	4 cut(s)	49, 476, 857, 871
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	4 cut(s)	45, 472, 853, 867
FauI	CCCGC	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	3 cut(s)	135, 163, 465
FokI	GGATG	6 cut(s)	24, 239, 246, 441, 473, 520
Fsp4HI	GCNGC	3 cut(s)	135, 163, 465
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	2 cut(s)	200, 586
GluI	GCNGC	3 cut(s)	135, 163, 465
GsuI	CTGGAG	2 cut(s)	106, 256
HaeII	RGCGCY	1 cut(s)	588
HhaI	GCGC	2 cut(s)	201, 587
Hin1II	CATG	4 cut(s)	49, 476, 857, 871
Hin6I	GCGC	2 cut(s)	199, 585
HinP1I	GCGC	2 cut(s)	199, 585
HphI	GGTGA	2 cut(s)	467, 770
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	2 cut(s)	624, 798
Hpy188III	TCNNGA	5 cut(s)	46, 94, 174, 335, 832
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	2 cut(s)	152, 171
HpyCH4III	ACNGT	2 cut(s)	208, 766
HpyCH4V	TGCA	5 cut(s)	104, 165, 464, 527, 730
HpyF3I	CTNAG	2 cut(s)	68, 366
Hsp92II	CATG	4 cut(s)	49, 476, 857, 871
HspAI	GCGC	2 cut(s)	199, 585
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	6 cut(s)	17, 96, 212, 407, 469, 798
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	511
LpnPI	CCDG	6 cut(s)	54, 70, 187, 220, 247, 573
Lsp1109I	GCAGC	2 cut(s)	149, 476
LweI	GCATC	3 cut(s)	46, 419, 451
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	319, 385
MalI	GATC	6 cut(s)	19, 98, 214, 409, 471, 800
MboI	GATC	6 cut(s)	17, 96, 212, 407, 469, 798
MboII	GAAGA	4 cut(s)	198, 402, 497, 575
MflI	RGATCY	3 cut(s)	212, 407, 798
MhlI	GDGCHC	1 cut(s)	648
MluCI	AATT	2 cut(s)	255, 288
MmeI	TCCRAC	2 cut(s)	533, 561
MnlI	CCTC	7 cut(s)	81, 217, 231, 451, 485, 583, 761
MseI	TTAA	2 cut(s)	11, 287
MspA1I	CMGCKG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	201
NdeII	GATC	6 cut(s)	17, 96, 212, 407, 469, 798
NheI	GCTAGC	1 cut(s)	130
NlaIII	CATG	4 cut(s)	49, 476, 857, 871
NspI	RCATGY	1 cut(s)	871
PagI	TCATGA	1 cut(s)	45
PciI	ACATGT	1 cut(s)	867
PciSI	GCTCTTC	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	3 cut(s)	136, 164, 466
PscI	ACATGT	1 cut(s)	867
PshBI	ATTAAT	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PsuI	RGATCY	3 cut(s)	212, 407, 798
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	11, 287
SatI	GCNGC	3 cut(s)	135, 163, 465
Sau3AI	GATC	6 cut(s)	17, 96, 212, 407, 469, 798
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	648
SetI	ASST	5 cut(s)	74, 92, 469, 496, 779
SfaNI	GCATC	3 cut(s)	46, 419, 451
Sse9I	AATT	2 cut(s)	255, 288
SsiI	CCGC	4 cut(s)	135, 264, 442, 781
SspI	AATATT	2 cut(s)	108, 828
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	754
TaaI	ACNGT	2 cut(s)	208, 766
TaqI	TCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	255, 288
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	11, 287
Tru9I	TTAA	2 cut(s)	11, 287
TscAI	CASTG	1 cut(s)	374
TseI	GCWGC	2 cut(s)	162, 464
TspDTI	ATGAA	5 cut(s)	171, 243, 248, 498, 576
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	374
Van91I	CCANNNNNTGG	1 cut(s)	515
VspI	ATTAAT	1 cut(s)	287
XceI	RCATGY	1 cut(s)	871
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.