Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Reverse (-)

63665054 .. 63668083

Gene Structure 3030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCTACGGCTACTACTGCTCCAAGGTATTGGTGGAACTGGAGGTTCTTGACCGGTGCAATATTTATATTGTCTAGTATAGTTATGGCTGCAGTTCTTATAAGGAAATATGAAGGCTGTAAAAAATCCAGGAGGGAAAGAAGAAAAAATCAGCGTGAAACAGTAGGATCTTTATATGAGGATGAAGCCTGGAGGACATCTTTCAAAGTAATTCATCCCGCTTGGCTTCTTGCGTACAGAATAGCTGCTTTCGTTGTGCTTCTGGCCTTGATAATTACCAATTTTATTCTTGATGGAGCTGTCATAGTTTTCTTCTATACTCAGTGGACATTTTGTTTGGTCACAATCTATTTTGCGATTGGAATTTCACTCTCCATTTATGGATGCTACAAATACCGAAATAGAGTTGGCGATGATGCAGCTGATTATGTGAGAGATGAAGAGGAAGGTACATATATTGCTCCAACACTCGGCGAAAATGAAGATACATTCAACACGTCTAAAAGTTTTACTGATGAAGAATGTCCCTCCCGCAAAGCCGCAGGAGTATATGTTTATATCTTTCAAGTCATTTATCAGATGTGTGGGGGTGCTGTGGTGCTCACTGATGTTGTATTTTGGTCCCTTCTGTATCCAAATCTAGATAGCGAATATGACGAACTGGACTTTATTATGGCCAGTATGCACTCATTCAATCTTGGTCTCCTCCTTGGTGATACAATTTTGAATGGCATGCGGTTTCCAATGTTTCGAATCTCATATTTTGTGCTATGGACGGGATTATTCGTGATTTTCCAGTGGATAATCCACGGTTGTATAGACATGTGGTGGCCTTATCCATTTCTCGACTTGTCATCCAATTATGCACCCTTATGGTATCTTGGGGTCGGAGTGGCGCATATCCCATGCTACGGCGCCTATGCTTTAATTATTAGGATGAAGCAGTTTTGGTTCTCAAGATCATTCCCGAAGTCTTTTCAGGGGGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

38.34

Weight (kDa)

6.44

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	914
AciI	CCGC	4 cut(s)	219, 532, 540, 736
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	675
AcsI	RAATTY	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	915
AfaI	GTAC	2 cut(s)	236, 451
AfiI	CCNNNNNNNGG	2 cut(s)	470, 911
AflIII	ACRYGT	2 cut(s)	495, 822
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	5 cut(s)	205, 493, 566, 694, 727
AjiI	CACGTC	1 cut(s)	498
AjnI	CCWGG	2 cut(s)	128, 188
AluBI	AGCT	3 cut(s)	245, 299, 422
AluI	AGCT	3 cut(s)	245, 299, 422
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	1 cut(s)	707
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	3 cut(s)	264, 675, 830
ApeKI	GCWGC	3 cut(s)	89, 245, 419
ApoI	RAATTY	1 cut(s)	363
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AsiGI	ACCGGT	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	898, 917
AspS9I	GGNCC	1 cut(s)	621
AsuHPI	GGTGA	1 cut(s)	725
AsuII	TTCGAA	1 cut(s)	751
AvaII	GGWCC	1 cut(s)	621
BalI	TGGCCA	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	914
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	3 cut(s)	76, 232, 431
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	2 cut(s)	24, 928
BciT130I	CCWGG	2 cut(s)	130, 190
BciVI	GTATCC	1 cut(s)	642
BcoDI	GTCTC	1 cut(s)	707
BfaI	CTAG	2 cut(s)	75, 641
BfmI	CTRYAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	918
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	4 cut(s)	90, 246, 420, 540
BlsI	GCNGC	4 cut(s)	91, 247, 421, 541
Bme1390I	CCNGG	2 cut(s)	130, 190
Bme18I	GGWCC	1 cut(s)	621
BmgBI	CACGTC	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	2 cut(s)	623, 916
BmrFI	CCNGG	2 cut(s)	130, 190
BmsI	GCATC	2 cut(s)	374, 406
BpmI	CTGGAG	2 cut(s)	61, 211
Bpu14I	TTCGAA	1 cut(s)	751
BpuEI	CTTGAG	1 cut(s)	940
BsaHI	GRCGYC	1 cut(s)	915
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	3 cut(s)	23, 709, 808
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 537, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 911
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	4 cut(s)	44, 666, 678, 796
BseBI	CCWGG	2 cut(s)	130, 190
BseDI	CCNNGG	3 cut(s)	23, 709, 808
BseGI	GGATG	5 cut(s)	187, 214, 389, 854, 942
BseLI	CCNNNNNNNGG	2 cut(s)	470, 911
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	4 cut(s)	44, 666, 678, 796
BseRI	GAGGAG	1 cut(s)	695
BseXI	GCAGC	3 cut(s)	76, 232, 431
BshFI	GGCC	3 cut(s)	266, 677, 832
BshNI	GGYRCC	1 cut(s)	914
BshTI	ACCGGT	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	2 cut(s)	510, 607
BslI	CCNNNNNNNGG	2 cut(s)	470, 911
BsmAI	GTCTC	1 cut(s)	707
BsmFI	GGGAC	2 cut(s)	510, 607
BsnI	GGCC	3 cut(s)	266, 677, 832
Bso31I	GGTCTC	1 cut(s)	707
Bsp119I	TTCGAA	1 cut(s)	751
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	2 cut(s)	167, 959
BspACI	CCGC	4 cut(s)	219, 532, 540, 736
BspANI	GGCC	3 cut(s)	266, 677, 832
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	623, 916
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	175
BspT104I	TTCGAA	1 cut(s)	751
BspT107I	GGYRCC	1 cut(s)	914
BspTNI	GGTCTC	1 cut(s)	707
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	4 cut(s)	44, 666, 678, 796
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	3 cut(s)	23, 709, 808
BssMI	GATC	2 cut(s)	167, 959
BssNI	GRCGYC	1 cut(s)	915
BssT1I	CCWWGG	2 cut(s)	23, 709
Bst2UI	CCWGG	2 cut(s)	130, 190
Bst4CI	ACNGT	2 cut(s)	163, 812
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	915
BstBI	TTCGAA	1 cut(s)	751
BstC8I	GCNNGC	1 cut(s)	734
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	808
BstF5I	GGATG	5 cut(s)	187, 214, 389, 854, 942
BstH2I	RGCGCY	1 cut(s)	918
BstHHI	GCGC	2 cut(s)	898, 917
BstKTI	GATC	2 cut(s)	170, 962
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	2 cut(s)	167, 959
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	2 cut(s)	130, 190
BstNSI	RCATGY	2 cut(s)	736, 826
BstSCI	CCNGG	2 cut(s)	128, 188
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	3 cut(s)	76, 232, 431
BstX2I	RGATCY	1 cut(s)	167
BstXI	CCANNNNNNTGG	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	3 cut(s)	266, 677, 832
BtgI	CCRYGG	1 cut(s)	808
BtgZI	GCGATG	1 cut(s)	426
BtrI	CACGTC	1 cut(s)	498
BtsCI	GGATG	5 cut(s)	187, 214, 389, 854, 942
BtsIMutI	CAGTG	3 cut(s)	329, 603, 803
Cac8I	GCNNGC	1 cut(s)	734
CfoI	GCGC	2 cut(s)	898, 917
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	235, 450
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	3 cut(s)	733, 823, 906
CviQI	GTAC	2 cut(s)	235, 450
DdeI	CTNAG	1 cut(s)	321
DinI	GGCGCC	1 cut(s)	916
DpnI	GATC	2 cut(s)	169, 961
DpnII	GATC	2 cut(s)	167, 959
EaeI	YGGCCR	1 cut(s)	675
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	2 cut(s)	23, 709
Eco31I	GGTCTC	1 cut(s)	707
Eco47I	GGWCC	1 cut(s)	621
EcoRII	CCWGG	2 cut(s)	128, 188
EcoT14I	CCWWGG	2 cut(s)	23, 709
EgeI	GGCGCC	1 cut(s)	916
EheI	GGCGCC	1 cut(s)	916
ErhI	CCWWGG	2 cut(s)	23, 709
FaeI	CATG	3 cut(s)	736, 826, 909
FaqI	GGGAC	2 cut(s)	510, 607
FatI	CATG	3 cut(s)	732, 822, 905
FauI	CCCGC	2 cut(s)	226, 539
Fnu4HI	GCNGC	4 cut(s)	90, 246, 420, 540
FokI	GGATG	5 cut(s)	194, 201, 396, 841, 949
Fsp4HI	GCNGC	4 cut(s)	90, 246, 420, 540
FspBI	CTAG	2 cut(s)	75, 641
GlaI	GCGC	2 cut(s)	897, 916
GluI	GCNGC	4 cut(s)	90, 246, 420, 540
GsuI	CTGGAG	2 cut(s)	61, 211
HaeII	RGCGCY	1 cut(s)	918
HaeIII	GGCC	3 cut(s)	266, 677, 832
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	2 cut(s)	898, 917
Hin1I	GRCGYC	1 cut(s)	915
Hin1II	CATG	3 cut(s)	736, 826, 909
Hin6I	GCGC	2 cut(s)	896, 915
HinP1I	GCGC	2 cut(s)	896, 915
HinfI	GANTC	1 cut(s)	753
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	579, 890
Hpy188III	TCNNGA	7 cut(s)	49, 290, 641, 787, 845, 957, 967
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	3 cut(s)	107, 440, 635
HpyCH4III	ACNGT	2 cut(s)	163, 812
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	5 cut(s)	59, 92, 419, 685, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	497
Hsp92I	GRCGYC	1 cut(s)	915
Hsp92II	CATG	3 cut(s)	736, 826, 909
HspAI	GCGC	2 cut(s)	896, 915
KasI	GGCGCC	1 cut(s)	914
Kzo9I	GATC	2 cut(s)	167, 959
LmnI	GCTCC	3 cut(s)	25, 296, 466
Lsp1109I	GCAGC	3 cut(s)	76, 232, 431
LweI	GCATC	2 cut(s)	374, 406
MaeI	CTAG	2 cut(s)	75, 641
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	2 cut(s)	169, 961
MboI	GATC	2 cut(s)	167, 959
MboII	GAAGA	5 cut(s)	153, 304, 452, 494, 530
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	603
MlsI	TGGCCA	1 cut(s)	677
MluCI	AATT	7 cut(s)	210, 273, 280, 363, 720, 859, 927
MluNI	TGGCCA	1 cut(s)	677
Mly113I	GGCGCC	1 cut(s)	915
MmeI	TCCRAC	2 cut(s)	488, 868
MnlI	CCTC	7 cut(s)	36, 126, 172, 186, 436, 538, 716
Mox20I	TGGCCA	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	1 cut(s)	926
MslI	CAYNNNNRTG	1 cut(s)	871
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	130, 190
MvaI	CCWGG	2 cut(s)	130, 190
MwoI	GCNNNNNNNGC	1 cut(s)	17
NarI	GGCGCC	1 cut(s)	915
NdeII	GATC	2 cut(s)	167, 959
NlaIII	CATG	3 cut(s)	736, 826, 909
NlaIV	GGNNCC	2 cut(s)	623, 916
NmeAIII	GCCGAG	1 cut(s)	450
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	2 cut(s)	736, 826
NspV	TTCGAA	1 cut(s)	751
PaeI	GCATGC	1 cut(s)	736
PciI	ACATGT	1 cut(s)	822
PfeI	GAWTC	1 cut(s)	753
PfoI	TCCNGGA	1 cut(s)	128
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	4 cut(s)	91, 247, 421, 541
PluTI	GGCGCC	1 cut(s)	918
PscI	ACATGT	1 cut(s)	822
PsiI	TTATAA	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	128, 188
PspGI	CCWGG	2 cut(s)	128, 188
PspN4I	GGNNCC	2 cut(s)	623, 916
PspPI	GGNCC	1 cut(s)	621
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	236, 451
RsaNI	GTAC	2 cut(s)	235, 450
RseI	CAYNNNNRTG	1 cut(s)	871
SaqAI	TTAA	1 cut(s)	926
SatI	GCNGC	4 cut(s)	90, 246, 420, 540
Sau3AI	GATC	2 cut(s)	167, 959
Sau96I	GGNCC	1 cut(s)	621
ScrFI	CCNGG	2 cut(s)	130, 190
SduI	GDGCHC	1 cut(s)	603
SetI	ASST	7 cut(s)	29, 47, 247, 301, 424, 451, 500
SfaNI	GCATC	2 cut(s)	374, 406
SfcI	CTRYAG	1 cut(s)	90
SfoI	GGCGCC	1 cut(s)	916
SfuI	TTCGAA	1 cut(s)	751
SinI	GGWCC	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	871
SmlI	CTYRAG	1 cut(s)	955
SmoI	CTYRAG	1 cut(s)	955
SphI	GCATGC	1 cut(s)	736
Sse9I	AATT	7 cut(s)	210, 273, 280, 363, 720, 859, 927
SsiI	CCGC	4 cut(s)	219, 532, 540, 736
SspDI	GGCGCC	1 cut(s)	914
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	2 cut(s)	75, 641
StyD4I	CCNGG	2 cut(s)	128, 188
StyI	CCWWGG	2 cut(s)	23, 709
TaaI	ACNGT	2 cut(s)	163, 812
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	2 cut(s)	751, 846
TasI	AATT	7 cut(s)	210, 273, 280, 363, 720, 859, 927
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	1 cut(s)	753
Tru1I	TTAA	1 cut(s)	926
Tru9I	TTAA	1 cut(s)	926
TscAI	CASTG	3 cut(s)	329, 610, 803
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	3 cut(s)	89, 245, 419
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	7 cut(s)	126, 198, 203, 453, 495, 531, 953
TspRI	CASTG	3 cut(s)	329, 610, 803
VpaK11BI	GGWCC	1 cut(s)	621
XapI	RAATTY	1 cut(s)	363
XbaI	TCTAGA	1 cut(s)	640
XceI	RCATGY	2 cut(s)	736, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XspI	CTAG	2 cut(s)	75, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.