Rroxscaffold_5G00382760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002061
Physical Location & Seq
Forward (+)
62561492 .. 62564257
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382760.1

Sequence Viewer

Length: 1041 bp
ATGAGTTTCTTAACAGGATCATCGAGCCATTCGTGGCATCCAATCATGACTACGGATACTACTGTTCTAAGGTATTGGTGGAACTGGAGGTTCTTGATCAGTGCAATATTTATATTGTCTAGTATGGTTCTAGCCGCAGGTCTTATATGGAAATATGAAGGCTGCAAAAAATCCAGAAGGGGAAGAAGAGAAAATCAGCGAGAAACAGTAGGATCTCTATTTGAGGATGAAGCCTGGAGGACATCTTTCAAAGTAATTCATCCCACTTGGCTTCTTGCTTATAGAGTTGTTGCTTTCATTTTGCTTCTGTCCTTGATAGTTACCAATTTTGTTCTTGATGGAGCTGGCATACTTTACTTCTATACTCAGTGGACATTTTGTTTGGTCACAATCTATTTTGGGCTTGGATCTTCACTCTCCATTTATGGATGCTACAAATACCGCAATAGAGTTGGTGAGGATGCAGCTGATCATCTGAGACATGAAGAACGAGGTAGTACTTATGTTGCTCCAACACTTGGCAAAAATGCAGATACATCCAACTCATCTAAAAGTTTCACTGACGAAGAATGCCCCTCCCACAAAGGCGCTGGTCTAATTGTTTATATCTTTCAAGTCATTTATCAGATGTGTGGGGGTGCTGTGGTGCTCACTGATGTGGTATTTTGGCTCATTCTGTATCCATTTCTAACAAGAAAAGATTACAAACTGGACTTTATGATGGCCAGTATGCACTCATTCAATCTTGTTTTCCTCCTTGGTGAGACAACTTTGAATAGCTTGCGGTTTCCATTGTTTCGAATCTCATATTTTGTGCTATGGACGGGAGTATTCGTGATTTTCCAATGGATAATCCACGCTTGTAAAAACATGTGGTGGCCTTATCCATTTCTCAACTTGTCATCCTCATATGCACCCTTATGGTATCTTGGGGTTGGAGTCATGCATATCCCATGCTACGGTATCTTTGCTTTAATTATTTGGATGAAGCAGTTGTGGTTCTCAAGATCATTCCCGGAGTCTTTTCAGGGTGAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

40.26

Weight (kDa)

8.97

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 518
AciI CCGC 3 cut(s) 135, 442, 784
AclWI GGATC 3 cut(s) 25, 220, 415
AcoI YGGCCR 1 cut(s) 723
AfaI GTAC 1 cut(s) 499
AfiI CCNNNNNNNGG 2 cut(s) 518, 959
AflIII ACRYGT 1 cut(s) 870
AgsI TTSAA 4 cut(s) 250, 614, 742, 775
AjnI CCWGG 1 cut(s) 233
AleI CACNNNNGTG 1 cut(s) 656
AluBI AGCT 3 cut(s) 344, 467, 780
AluI AGCT 3 cut(s) 344, 467, 780
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 2 cut(s) 472, 758
AlwI GGATC 3 cut(s) 25, 220, 415
AoxI GGCC 2 cut(s) 723, 878
ApeKI GCWGC 2 cut(s) 162, 464
ArsI GACNNNNNNTTYG 2 cut(s) 364, 396
AspLEI GCGC 1 cut(s) 590
AsuC2I CCSGG 1 cut(s) 1016
AsuHPI GGTGA 2 cut(s) 467, 773
AsuII TTCGAA 1 cut(s) 799
BaeI ACNNNNGTAYC 2 cut(s) 48, 81
BalI TGGCCA 1 cut(s) 725
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 2 cut(s) 149, 476
BccI CCATC 2 cut(s) 332, 715
BciT130I CCWGG 1 cut(s) 235
BciVI GTATCC 2 cut(s) 49, 690
BclI TGATCA 2 cut(s) 96, 469
BcnI CCSGG 1 cut(s) 1016
BcoDI GTCTC 2 cut(s) 472, 758
BfaI CTAG 2 cut(s) 120, 131
BfoI RGCGCY 1 cut(s) 591
BfuAI ACCTGC 1 cut(s) 128
BfuI GTATCC 2 cut(s) 49, 690
BisI GCNGC 3 cut(s) 135, 163, 465
BlsI GCNGC 3 cut(s) 136, 164, 466
BmcAI AGTACT 1 cut(s) 499
Bme1390I CCNGG 2 cut(s) 235, 1016
BmrFI CCNGG 2 cut(s) 235, 1016
BmsI GCATC 3 cut(s) 46, 419, 451
BpmI CTGGAG 2 cut(s) 106, 256
Bpu14I TTCGAA 1 cut(s) 799
BpuEI CTTGAG 1 cut(s) 988
BpuMI CCSGG 1 cut(s) 1016
BsaJI CCNNGG 1 cut(s) 757
BsaXI ACNNNNNCTCC 2 cut(s) 819, 849
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 959
Bse1I ACTGG 3 cut(s) 89, 714, 726
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 757
BseGI GGATG 8 cut(s) 37, 232, 259, 434, 466, 536, 902, 990
BseLI CCNNNNNNNGG 2 cut(s) 518, 959
BseMII CTCAG 2 cut(s) 380, 467
BseNI ACTGG 3 cut(s) 89, 714, 726
BseXI GCAGC 2 cut(s) 149, 476
BshFI GGCC 2 cut(s) 725, 880
BsiHKAI GWGCWC 1 cut(s) 651
BsiSI CCGG 1 cut(s) 1016
BslI CCNNNNNNNGG 2 cut(s) 518, 959
BsmAI GTCTC 2 cut(s) 472, 758
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 2 cut(s) 725, 880
Bsp119I TTCGAA 1 cut(s) 799
Bsp1286I GDGCHC 1 cut(s) 651
Bsp143I GATC 6 cut(s) 17, 96, 212, 407, 469, 1007
BspACI CCGC 3 cut(s) 135, 442, 784
BspANI GGCC 2 cut(s) 725, 880
BspCNI CTCAG 2 cut(s) 379, 468
BspHI TCATGA 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 3 cut(s) 25, 220, 415
BspT104I TTCGAA 1 cut(s) 799
BsrI ACTGG 3 cut(s) 89, 714, 726
BssECI CCNNGG 1 cut(s) 757
BssMI GATC 6 cut(s) 17, 96, 212, 407, 469, 1007
BssT1I CCWWGG 1 cut(s) 757
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 3 cut(s) 64, 208, 962
Bst6I CTCTTC 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 799
BstC8I GCNNGC 2 cut(s) 346, 782
BstDEI CTNAG 3 cut(s) 68, 366, 476
BstF5I GGATG 8 cut(s) 37, 232, 259, 434, 466, 536, 902, 990
BstH2I RGCGCY 1 cut(s) 591
BstHHI GCGC 1 cut(s) 590
BstKTI GATC 6 cut(s) 20, 99, 215, 410, 472, 1010
BstMAI GTCTC 2 cut(s) 472, 758
BstMBI GATC 6 cut(s) 17, 96, 212, 407, 469, 1007
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 874
BstSCI CCNGG 2 cut(s) 233, 1014
BstV1I GCAGC 2 cut(s) 149, 476
BstX2I RGATCY 2 cut(s) 212, 407
BstYI RGATCY 2 cut(s) 212, 407
BsuI GTATCC 2 cut(s) 49, 690
BsuRI GGCC 2 cut(s) 725, 880
BtsCI GGATG 8 cut(s) 37, 232, 259, 434, 466, 536, 902, 990
BtsIMutI CAGTG 4 cut(s) 106, 374, 558, 651
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 346, 782
CciI TCATGA 1 cut(s) 45
CfoI GCGC 1 cut(s) 590
Csp6I GTAC 1 cut(s) 498
CviAII CATG 5 cut(s) 46, 482, 871, 943, 954
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 3 cut(s) 68, 366, 476
DpnI GATC 6 cut(s) 19, 98, 214, 409, 471, 1009
DpnII GATC 6 cut(s) 17, 96, 212, 407, 469, 1007
EaeI YGGCCR 1 cut(s) 723
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 757
EcoT22I ATGCAT 1 cut(s) 948
ErhI CCWWGG 1 cut(s) 757
FaeI CATG 5 cut(s) 49, 485, 874, 946, 957
FatI CATG 5 cut(s) 45, 481, 870, 942, 953
FauNDI CATATG 1 cut(s) 910
FbaI TGATCA 2 cut(s) 96, 469
Fnu4HI GCNGC 3 cut(s) 135, 163, 465
FokI GGATG 8 cut(s) 24, 239, 246, 441, 473, 523, 889, 997
Fsp4HI GCNGC 3 cut(s) 135, 163, 465
FspBI CTAG 2 cut(s) 120, 131
GlaI GCGC 1 cut(s) 589
GluI GCNGC 3 cut(s) 135, 163, 465
GsuI CTGGAG 2 cut(s) 106, 256
HaeII RGCGCY 1 cut(s) 591
HaeIII GGCC 2 cut(s) 725, 880
HapII CCGG 1 cut(s) 1016
HhaI GCGC 1 cut(s) 590
Hin1II CATG 5 cut(s) 49, 485, 874, 946, 957
Hin6I GCGC 1 cut(s) 588
HinP1I GCGC 1 cut(s) 588
HinfI GANTC 3 cut(s) 801, 939, 1019
HpaII CCGG 1 cut(s) 1016
HphI GGTGA 2 cut(s) 467, 773
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 2 cut(s) 477, 627
Hpy188III TCNNGA 6 cut(s) 46, 94, 174, 335, 835, 1005
Hpy8I GTNNAC 1 cut(s) 372
HpyAV CCTTC 2 cut(s) 152, 171
HpyCH4III ACNGT 3 cut(s) 64, 208, 962
HpyCH4V TGCA 7 cut(s) 104, 165, 464, 530, 733, 914, 946
HpyF3I CTNAG 3 cut(s) 68, 366, 476
Hsp92II CATG 5 cut(s) 49, 485, 874, 946, 957
HspAI GCGC 1 cut(s) 588
Ksp22I TGATCA 2 cut(s) 96, 469
Kzo9I GATC 6 cut(s) 17, 96, 212, 407, 469, 1007
LmnI GCTCC 2 cut(s) 341, 514
Lsp1109I GCAGC 2 cut(s) 149, 476
LweI GCATC 3 cut(s) 46, 419, 451
MaeI CTAG 2 cut(s) 120, 131
MaeIII GTNAC 2 cut(s) 319, 385
MalI GATC 6 cut(s) 19, 98, 214, 409, 471, 1009
MboI GATC 6 cut(s) 17, 96, 212, 407, 469, 1007
MboII GAAGA 5 cut(s) 195, 198, 402, 497, 578
MflI RGATCY 2 cut(s) 212, 407
MhlI GDGCHC 1 cut(s) 651
MlsI TGGCCA 1 cut(s) 725
MluCI AATT 4 cut(s) 255, 325, 597, 975
MluNI TGGCCA 1 cut(s) 725
MlyI GAGTC 2 cut(s) 948, 1028
MmeI TCCRAC 3 cut(s) 536, 564, 916
MnlI CCTC 9 cut(s) 81, 217, 231, 451, 485, 586, 764, 916, 1029
Mox20I TGGCCA 1 cut(s) 725
Mph1103I ATGCAT 1 cut(s) 948
MscI TGGCCA 1 cut(s) 725
MseI TTAA 2 cut(s) 11, 974
MslI CAYNNNNRTG 2 cut(s) 656, 919
Msp20I TGGCCA 1 cut(s) 725
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 1 cut(s) 1016
MspR9I CCNGG 2 cut(s) 235, 1016
Mva1269I GAATGC 1 cut(s) 575
MvaI CCWGG 1 cut(s) 235
NciI CCSGG 1 cut(s) 1016
NdeI CATATG 1 cut(s) 910
NdeII GATC 6 cut(s) 17, 96, 212, 407, 469, 1007
NlaIII CATG 5 cut(s) 49, 485, 874, 946, 957
NmuCI GTSAC 1 cut(s) 385
NsiI ATGCAT 1 cut(s) 948
NspI RCATGY 1 cut(s) 874
NspV TTCGAA 1 cut(s) 799
OliI CACNNNNGTG 1 cut(s) 656
PagI TCATGA 1 cut(s) 45
PciI ACATGT 1 cut(s) 870
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PctI GAATGC 1 cut(s) 575
PfeI GAWTC 1 cut(s) 801
PflMI CCANNNNNTGG 1 cut(s) 518
PfoI TCCNGGA 1 cut(s) 1014
PkrI GCNGC 3 cut(s) 136, 164, 466
PleI GAGTC 2 cut(s) 947, 1027
PpsI GAGTC 2 cut(s) 947, 1027
PscI ACATGT 1 cut(s) 870
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PsuI RGATCY 2 cut(s) 212, 407
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
RseI CAYNNNNRTG 2 cut(s) 656, 919
SaqAI TTAA 2 cut(s) 11, 974
SatI GCNGC 3 cut(s) 135, 163, 465
Sau3AI GATC 6 cut(s) 17, 96, 212, 407, 469, 1007
ScaI AGTACT 1 cut(s) 499
SchI GAGTC 2 cut(s) 948, 1028
ScrFI CCNGG 2 cut(s) 235, 1016
SduI GDGCHC 1 cut(s) 651
SetI ASST 8 cut(s) 74, 92, 142, 346, 469, 496, 782, 1040
SfaNI GCATC 3 cut(s) 46, 419, 451
SfuI TTCGAA 1 cut(s) 799
SmiMI CAYNNNNRTG 2 cut(s) 656, 919
SmlI CTYRAG 1 cut(s) 1003
SmoI CTYRAG 1 cut(s) 1003
Sse9I AATT 4 cut(s) 255, 325, 597, 975
SsiI CCGC 3 cut(s) 135, 442, 784
SspI AATATT 1 cut(s) 108
SspMI CTAG 2 cut(s) 120, 131
StyD4I CCNGG 2 cut(s) 233, 1014
StyI CCWWGG 1 cut(s) 757
TaaI ACNGT 3 cut(s) 64, 208, 962
TaqI TCGA 2 cut(s) 23, 799
TasI AATT 4 cut(s) 255, 325, 597, 975
TatI WGTACW 1 cut(s) 497
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 1 cut(s) 801
Tru1I TTAA 2 cut(s) 11, 974
Tru9I TTAA 2 cut(s) 11, 974
TscAI CASTG 4 cut(s) 106, 374, 565, 658
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 2 cut(s) 162, 464
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 6 cut(s) 171, 243, 248, 286, 498, 1001
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 4 cut(s) 106, 374, 565, 658
Van91I CCANNNNNTGG 1 cut(s) 518
XceI RCATGY 1 cut(s) 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 587
XspI CTAG 2 cut(s) 120, 131
ZrmI AGTACT 1 cut(s) 499
Zsp2I ATGCAT 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.