RLG00000006058

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002061
Physical Location & Seq
Forward (+)
3971704 .. 3973870
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006058

Sequence Viewer

Length: 1038 bp
ATGAGTTTCTTAACAGGATCATCGAGCCATTCGTGGCATCCAGTCATGGCTACGGCTACTACTGCTCCAAGGTATTGGTGGAACTGGAGGTTCTTGACCGGTGCAATATTTATATTGTCTAGTATAGTTATGGCTGCAGTTCTTATAAGGAAATATGAAGGCTGCAAAAAATCCAGGAGGGAAAGAAGAGAAAATCAGCGCGAAACAGTTGGATCTTTATATGAGGATGAAGGCTGGAGGACATCTTTCAAAGTAGTTCATCCCGCTTGGCTTCTTGCGTACAGAATAGCTGCTTTCGTTGTGCTTCTGGCTTTGATAATTACCAATTTTGTTCTTGATGGAGCTGTCATAGTTTTCTTCTATACTCAGTGGACATTTTGTTTGGTCACAATCTATTTTGCGATTGGAATTTCACTCTCCATTTATGGATGCTACAAATGCCGCAATAGAGTTGGCGAGGATGCAGCTGATCATGTGATAGATGAAGAGGAAGGTACATATGTTGCTCCAACACTTGGCGAAAATGCAGATACATCCAACACGTCTAAAAGTTTTACTGATAGAGAATGTCCCTCCCGCCAAGCCGCAGGAGTATATGTTTATATCTTTCAAGTCATTTATCAGATGTGTGGGGGTGCTGTGGTGCTCACTGATGTTGTATTTTGGTCCCTTCTGTATCCAAATCTAGATAGCGAATATGACGAACTGGACTTTATGATGGCCAGTATGCACTCATTCAATCTTGGTCTCCTCCTTGGTGATACAATTTTGAATGGCATGCGGTTTCCAATGTTTCGAATCTCATATTTTGTGCTATGGACGGGATTATTCGTGATTTTCCAGTGGATAATCCATGGTTGTATAGACATGTGGTGGCCTTATCCATTTCTCGACTTGTCATCCAATTATGCACCCTTATGGTATCTTGGGGTCGGAGTGGCGCATATCCCATGCTACGGCGCCTATGCTTTAATTATTAGGATGAAGCAGTTTTGGTTCTCAAGATCATTCCCGAAGTCTTTTCAGGGTGAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

39.64

Weight (kDa)

6.17

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 959
AccB7I CCANNNNNTGG 1 cut(s) 515
AccII CGCG 1 cut(s) 201
AciI CCGC 5 cut(s) 264, 442, 577, 585, 781
AclWI GGATC 2 cut(s) 25, 220
AcoI YGGCCR 1 cut(s) 720
AcsI RAATTY 1 cut(s) 408
AcyI GRCGYC 1 cut(s) 960
AfaI GTAC 2 cut(s) 281, 496
AfiI CCNNNNNNNGG 2 cut(s) 515, 956
AflIII ACRYGT 2 cut(s) 540, 867
AgeI ACCGGT 1 cut(s) 98
AgsI TTSAA 4 cut(s) 250, 611, 739, 772
AjiI CACGTC 1 cut(s) 543
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 3 cut(s) 290, 344, 467
AluI AGCT 3 cut(s) 290, 344, 467
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 1 cut(s) 752
AlwI GGATC 2 cut(s) 25, 220
AoxI GGCC 2 cut(s) 720, 875
ApeKI GCWGC 4 cut(s) 134, 162, 290, 464
ApoI RAATTY 1 cut(s) 408
ArsI GACNNNNNNTTYG 2 cut(s) 364, 396
AsiGI ACCGGT 1 cut(s) 98
AspLEI GCGC 3 cut(s) 201, 943, 962
AspS9I GGNCC 1 cut(s) 666
AsuHPI GGTGA 1 cut(s) 770
AsuII TTCGAA 1 cut(s) 796
AvaII GGWCC 1 cut(s) 666
BaeI ACNNNNGTAYC 2 cut(s) 486, 519
BalI TGGCCA 1 cut(s) 722
BanI GGYRCC 1 cut(s) 959
Bbv12I GWGCWC 1 cut(s) 648
BbvI GCAGC 4 cut(s) 121, 149, 277, 476
BccI CCATC 2 cut(s) 332, 712
BceAI ACGGC 2 cut(s) 69, 973
BciT130I CCWGG 1 cut(s) 175
BciVI GTATCC 1 cut(s) 687
BclI TGATCA 1 cut(s) 469
BcoDI GTCTC 1 cut(s) 752
BfaI CTAG 2 cut(s) 120, 686
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 963
BfuI GTATCC 1 cut(s) 687
BisI GCNGC 6 cut(s) 135, 163, 291, 442, 465, 585
BlsI GCNGC 6 cut(s) 136, 164, 292, 443, 466, 586
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 666
BmgBI CACGTC 1 cut(s) 543
BmgT120I GGNCC 1 cut(s) 666
BmiI GGNNCC 2 cut(s) 668, 961
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 3 cut(s) 46, 419, 451
BpmI CTGGAG 2 cut(s) 106, 256
Bpu14I TTCGAA 1 cut(s) 796
BpuEI CTTGAG 1 cut(s) 985
BsaHI GRCGYC 1 cut(s) 960
BsaI GGTCTC 1 cut(s) 752
BsaJI CCNNGG 3 cut(s) 68, 754, 853
BsaWI WCCGGW 1 cut(s) 98
BsaXI ACNNNNNCTCC 4 cut(s) 49, 79, 582, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 515, 956
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 5 cut(s) 41, 89, 711, 723, 841
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 3 cut(s) 68, 754, 853
BseGI GGATG 8 cut(s) 37, 232, 259, 434, 466, 533, 899, 987
BseLI CCNNNNNNNGG 2 cut(s) 515, 956
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 5 cut(s) 41, 89, 711, 723, 841
BseRI GAGGAG 1 cut(s) 740
BseXI GCAGC 4 cut(s) 121, 149, 277, 476
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 722, 877
BshNI GGYRCC 1 cut(s) 959
BshTI ACCGGT 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 648
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 2 cut(s) 555, 652
BslI CCNNNNNNNGG 2 cut(s) 515, 956
BsmAI GTCTC 1 cut(s) 752
BsmFI GGGAC 2 cut(s) 555, 652
BsnI GGCC 2 cut(s) 722, 877
Bso31I GGTCTC 1 cut(s) 752
Bsp119I TTCGAA 1 cut(s) 796
Bsp1286I GDGCHC 1 cut(s) 648
Bsp143I GATC 4 cut(s) 17, 212, 469, 1004
Bsp19I CCATGG 1 cut(s) 853
BspACI CCGC 5 cut(s) 264, 442, 577, 585, 781
BspANI GGCC 2 cut(s) 722, 877
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 668, 961
BspMAI CTGCAG 1 cut(s) 139
BspPI GGATC 2 cut(s) 25, 220
BspT104I TTCGAA 1 cut(s) 796
BspT107I GGYRCC 1 cut(s) 959
BspTNI GGTCTC 1 cut(s) 752
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 5 cut(s) 41, 89, 711, 723, 841
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 68, 754, 853
BssMI GATC 4 cut(s) 17, 212, 469, 1004
BssNI GRCGYC 1 cut(s) 960
BssT1I CCWWGG 3 cut(s) 68, 754, 853
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 2 cut(s) 181, 480
BstACI GRCGYC 1 cut(s) 960
BstBI TTCGAA 1 cut(s) 796
BstC8I GCNNGC 1 cut(s) 779
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 853
BstF5I GGATG 8 cut(s) 37, 232, 259, 434, 466, 533, 899, 987
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 963
BstHHI GCGC 3 cut(s) 201, 943, 962
BstKTI GATC 4 cut(s) 20, 215, 472, 1007
BstMAI GTCTC 1 cut(s) 752
BstMBI GATC 4 cut(s) 17, 212, 469, 1004
BstMWI GCNNNNNNNGC 2 cut(s) 62, 438
BstNI CCWGG 1 cut(s) 175
BstNSI RCATGY 2 cut(s) 781, 871
BstSCI CCNGG 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 135
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 4 cut(s) 121, 149, 277, 476
BstX2I RGATCY 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 75
BstYI RGATCY 1 cut(s) 212
BsuI GTATCC 1 cut(s) 687
BsuRI GGCC 2 cut(s) 722, 877
BtgI CCRYGG 1 cut(s) 853
BtrI CACGTC 1 cut(s) 543
BtsCI GGATG 8 cut(s) 37, 232, 259, 434, 466, 533, 899, 987
BtsIMutI CAGTG 3 cut(s) 374, 648, 848
Cac8I GCNNGC 1 cut(s) 779
CfoI GCGC 3 cut(s) 201, 943, 962
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 666
Csp6I GTAC 2 cut(s) 280, 495
CspAI ACCGGT 1 cut(s) 98
CviAII CATG 6 cut(s) 46, 473, 778, 854, 868, 951
CviQI GTAC 2 cut(s) 280, 495
DdeI CTNAG 1 cut(s) 366
DinI GGCGCC 1 cut(s) 961
DpnI GATC 4 cut(s) 19, 214, 471, 1006
DpnII GATC 4 cut(s) 17, 212, 469, 1004
EaeI YGGCCR 1 cut(s) 720
Eam1104I CTCTTC 2 cut(s) 181, 480
EarI CTCTTC 2 cut(s) 181, 480
Eco130I CCWWGG 3 cut(s) 68, 754, 853
Eco31I GGTCTC 1 cut(s) 752
Eco47I GGWCC 1 cut(s) 666
EcoRII CCWGG 1 cut(s) 173
EcoT14I CCWWGG 3 cut(s) 68, 754, 853
EgeI GGCGCC 1 cut(s) 961
EheI GGCGCC 1 cut(s) 961
ErhI CCWWGG 3 cut(s) 68, 754, 853
FaeI CATG 6 cut(s) 49, 476, 781, 857, 871, 954
FaqI GGGAC 2 cut(s) 555, 652
FatI CATG 6 cut(s) 45, 472, 777, 853, 867, 950
FauI CCCGC 2 cut(s) 271, 584
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 6 cut(s) 135, 163, 291, 442, 465, 585
FokI GGATG 8 cut(s) 24, 239, 246, 441, 473, 520, 886, 994
Fsp4HI GCNGC 6 cut(s) 135, 163, 291, 442, 465, 585
FspBI CTAG 2 cut(s) 120, 686
GlaI GCGC 3 cut(s) 200, 942, 961
GluI GCNGC 6 cut(s) 135, 163, 291, 442, 465, 585
GsuI CTGGAG 2 cut(s) 106, 256
HaeII RGCGCY 1 cut(s) 963
HaeIII GGCC 2 cut(s) 722, 877
HapII CCGG 1 cut(s) 99
HhaI GCGC 3 cut(s) 201, 943, 962
Hin1I GRCGYC 1 cut(s) 960
Hin1II CATG 6 cut(s) 49, 476, 781, 857, 871, 954
Hin6I GCGC 3 cut(s) 199, 941, 960
HinP1I GCGC 3 cut(s) 199, 941, 960
HinfI GANTC 1 cut(s) 798
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 770
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 2 cut(s) 624, 935
Hpy188III TCNNGA 7 cut(s) 94, 335, 686, 832, 890, 1002, 1012
Hpy8I GTNNAC 1 cut(s) 372
HpyAV CCTTC 4 cut(s) 152, 224, 485, 680
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 542
HpyCH4V TGCA 7 cut(s) 104, 137, 165, 464, 527, 730, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 438
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 542
Hsp92I GRCGYC 1 cut(s) 960
Hsp92II CATG 6 cut(s) 49, 476, 781, 857, 871, 954
HspAI GCGC 3 cut(s) 199, 941, 960
KasI GGCGCC 1 cut(s) 959
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 4 cut(s) 17, 212, 469, 1004
LmnI GCTCC 3 cut(s) 70, 341, 511
Lsp1109I GCAGC 4 cut(s) 121, 149, 277, 476
LweI GCATC 3 cut(s) 46, 419, 451
MaeI CTAG 2 cut(s) 120, 686
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 1 cut(s) 385
MalI GATC 4 cut(s) 19, 214, 471, 1006
MboI GATC 4 cut(s) 17, 212, 469, 1004
MboII GAAGA 3 cut(s) 198, 349, 497
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 648
MlsI TGGCCA 1 cut(s) 722
MluCI AATT 6 cut(s) 318, 325, 408, 765, 904, 972
MluNI TGGCCA 1 cut(s) 722
Mly113I GGCGCC 1 cut(s) 960
MmeI TCCRAC 4 cut(s) 190, 533, 561, 913
MnlI CCTC 9 cut(s) 81, 171, 217, 231, 451, 481, 583, 761, 1024
Mox20I TGGCCA 1 cut(s) 722
MscI TGGCCA 1 cut(s) 722
MseI TTAA 2 cut(s) 11, 971
MslI CAYNNNNRTG 1 cut(s) 916
Msp20I TGGCCA 1 cut(s) 722
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 175
MvaI CCWGG 1 cut(s) 175
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 62, 438
NarI GGCGCC 1 cut(s) 960
NcoI CCATGG 1 cut(s) 853
NdeI CATATG 1 cut(s) 499
NdeII GATC 4 cut(s) 17, 212, 469, 1004
NlaIII CATG 6 cut(s) 49, 476, 781, 857, 871, 954
NlaIV GGNNCC 2 cut(s) 668, 961
NmuCI GTSAC 1 cut(s) 385
NspI RCATGY 2 cut(s) 781, 871
NspV TTCGAA 1 cut(s) 796
PaeI GCATGC 1 cut(s) 781
PciI ACATGT 1 cut(s) 867
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PfeI GAWTC 1 cut(s) 798
PflMI CCANNNNNTGG 1 cut(s) 515
PfoI TCCNGGA 1 cut(s) 173
PinAI ACCGGT 1 cut(s) 98
PkrI GCNGC 6 cut(s) 136, 164, 292, 443, 466, 586
PluTI GGCGCC 1 cut(s) 963
PscI ACATGT 1 cut(s) 867
PsiI TTATAA 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 668, 961
PspPI GGNCC 1 cut(s) 666
PstI CTGCAG 1 cut(s) 139
PsuI RGATCY 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 281, 496
RsaNI GTAC 2 cut(s) 280, 495
RseI CAYNNNNRTG 1 cut(s) 916
SaqAI TTAA 2 cut(s) 11, 971
SatI GCNGC 6 cut(s) 135, 163, 291, 442, 465, 585
Sau3AI GATC 4 cut(s) 17, 212, 469, 1004
Sau96I GGNCC 1 cut(s) 666
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 648
SetI ASST 7 cut(s) 74, 92, 292, 346, 469, 496, 545
SfaNI GCATC 3 cut(s) 46, 419, 451
SfcI CTRYAG 1 cut(s) 135
SfoI GGCGCC 1 cut(s) 961
SfuI TTCGAA 1 cut(s) 796
SinI GGWCC 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 916
SmlI CTYRAG 1 cut(s) 1000
SmoI CTYRAG 1 cut(s) 1000
SphI GCATGC 1 cut(s) 781
Sse9I AATT 6 cut(s) 318, 325, 408, 765, 904, 972
SsiI CCGC 5 cut(s) 264, 442, 577, 585, 781
SspDI GGCGCC 1 cut(s) 959
SspI AATATT 1 cut(s) 108
SspMI CTAG 2 cut(s) 120, 686
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 3 cut(s) 68, 754, 853
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 545
TaqI TCGA 3 cut(s) 23, 796, 891
TasI AATT 6 cut(s) 318, 325, 408, 765, 904, 972
TauI GCSGC 2 cut(s) 444, 587
TfiI GAWTC 1 cut(s) 798
Tru1I TTAA 2 cut(s) 11, 971
Tru9I TTAA 2 cut(s) 11, 971
TscAI CASTG 3 cut(s) 374, 655, 848
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 4 cut(s) 134, 162, 290, 464
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 5 cut(s) 171, 243, 248, 498, 998
TspRI CASTG 3 cut(s) 374, 655, 848
Van91I CCANNNNNTGG 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 666
XapI RAATTY 1 cut(s) 408
XbaI TCTAGA 1 cut(s) 685
XceI RCATGY 2 cut(s) 781, 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 75
XspI CTAG 2 cut(s) 120, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.