Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011990.1

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Reverse (-)

52901 .. 55032

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011990.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgactacggatactaccgttctaaggtattggtggaactggaggttcttgatcagtgcagtatttatattgtctagtatgcttggatcttcactctccatttatggatgctacaaataccgcaatagagttggtgaggatgcagctgattttgtgagacatgaagaacgaggtagtacttatgttgctccaacacttggcaaaaatgcagatacatccaactcatctaaaagtttcactgacgaagaatgtccctcccacaaaggcgctggtctgattgtttatatctttcaagtcatttatcagatgtgtgggggtgctgtggtgctcactgatgtggtattttggctcattctgtatccatttttaacaagcaaagattacaaactggactttatgatggccagtatgcactcattcaatcttgttttcctccttggtgagacaactttgaatagcttgcagtttccattgtttcgaatctcatattttgtgctatggactggagtattcgtgattttccaatggataatccacgcttgtaaaaacatgtggtggccttatccatttctcgacttgtcatcctcatatgcacccttatggtatcttggggttggagtgatgcatatcccatgctacggtatctttgctttaattatttggatgaagcagttgtggttctcaagatcattgtcggagtcttttcagggtgagaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

27.74

Weight (kDa)

6.94

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	197
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	402
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	3 cut(s)	24, 197, 638
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	3 cut(s)	293, 421, 454
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	2 cut(s)	146, 459
AluI	AGCT	2 cut(s)	146, 459
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	151, 437
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	2 cut(s)	402, 557
ApeKI	GCWGC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	146, 452
AsuII	TTCGAA	1 cut(s)	478
BaeI	ACNNNNGTAYC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	394
BciVI	GTATCC	2 cut(s)	4, 369
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	151, 437
BfaI	CTAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	270
BfuI	GTATCC	2 cut(s)	4, 369
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmcAI	AGTACT	1 cut(s)	178
BmsI	GCATC	3 cut(s)	98, 130, 612
BpmI	CTGGAG	2 cut(s)	61, 525
Bpu14I	TTCGAA	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	667
BsaBI	GATNNNNATC	1 cut(s)	626
BsaJI	CCNNGG	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 197, 638
Bse1I	ACTGG	4 cut(s)	44, 393, 405, 508
Bse8I	GATNNNNATC	1 cut(s)	626
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	5 cut(s)	113, 145, 215, 581, 669
BseJI	GATNNNNATC	1 cut(s)	626
BseLI	CCNNNNNNNGG	3 cut(s)	24, 197, 638
BseNI	ACTGG	4 cut(s)	44, 393, 405, 508
BseXI	GCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	404, 559
BsiHKAI	GWGCWC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	3 cut(s)	24, 197, 638
BsmAI	GTCTC	2 cut(s)	151, 437
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	404, 559
Bsp119I	TTCGAA	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	51, 86, 686
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	404, 559
BspPI	GGATC	1 cut(s)	94
BspT104I	TTCGAA	1 cut(s)	478
BsrI	ACTGG	4 cut(s)	44, 393, 405, 508
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	3 cut(s)	51, 86, 686
BssT1I	CCWWGG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	19, 641
BstBI	TTCGAA	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	5 cut(s)	113, 145, 215, 581, 669
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	54, 89, 689
BstMAI	GTCTC	2 cut(s)	151, 437
BstMBI	GATC	3 cut(s)	51, 86, 686
BstNSI	RCATGY	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuI	GTATCC	2 cut(s)	4, 369
BsuRI	GGCC	2 cut(s)	404, 559
BtsCI	GGATG	5 cut(s)	113, 145, 215, 581, 669
BtsIMutI	CAGTG	3 cut(s)	61, 237, 330
Cac8I	GCNNGC	1 cut(s)	461
CfoI	GCGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	3 cut(s)	161, 550, 633
CviJI	RGCY	5 cut(s)	146, 349, 404, 459, 559
CviKI_1	RGCY	5 cut(s)	146, 349, 404, 459, 559
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	3 cut(s)	53, 88, 688
DpnII	GATC	3 cut(s)	51, 86, 686
EaeI	YGGCCR	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	436
EcoT22I	ATGCAT	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	3 cut(s)	164, 553, 636
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	3 cut(s)	160, 549, 632
FauNDI	CATATG	1 cut(s)	589
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	5 cut(s)	120, 152, 202, 568, 676
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	2 cut(s)	61, 525
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	404, 559
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	164, 553, 636
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	2 cut(s)	480, 698
HphI	GGTGA	2 cut(s)	146, 452
Hpy188I	TCNGA	3 cut(s)	276, 306, 697
Hpy188III	TCNNGA	4 cut(s)	49, 514, 572, 684
HpyCH4III	ACNGT	2 cut(s)	19, 641
HpyCH4V	TGCA	7 cut(s)	59, 143, 209, 412, 463, 593, 625
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	164, 553, 636
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	51, 86, 686
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	6 cut(s)	25, 255, 374, 418, 489, 692
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	3 cut(s)	98, 130, 612
MaeI	CTAG	1 cut(s)	75
MalI	GATC	3 cut(s)	53, 88, 688
MboI	GATC	3 cut(s)	51, 86, 686
MboII	GAAGA	3 cut(s)	81, 176, 257
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	1 cut(s)	654
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	4 cut(s)	215, 243, 595, 675
MnlI	CCTC	7 cut(s)	36, 130, 164, 265, 443, 595, 708
Mox20I	TGGCCA	1 cut(s)	404
Mph1103I	ATGCAT	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	2 cut(s)	368, 653
MslI	CAYNNNNRTG	2 cut(s)	335, 598
Msp20I	TGGCCA	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	3 cut(s)	51, 86, 686
NlaIII	CATG	3 cut(s)	164, 553, 636
NsiI	ATGCAT	1 cut(s)	627
NspI	RCATGY	1 cut(s)	553
NspV	TTCGAA	1 cut(s)	478
OliI	CACNNNNGTG	1 cut(s)	335
PciI	ACATGT	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	480
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PscI	ACATGT	1 cut(s)	549
PsuI	RGATCY	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
RseI	CAYNNNNRTG	2 cut(s)	335, 598
SaqAI	TTAA	2 cut(s)	368, 653
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	3 cut(s)	51, 86, 686
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	1 cut(s)	707
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	6 cut(s)	29, 47, 148, 175, 461, 719
SfaNI	GCATC	3 cut(s)	98, 130, 612
SfuI	TTCGAA	1 cut(s)	478
SmiMI	CAYNNNNRTG	2 cut(s)	335, 598
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
Sse9I	AATT	1 cut(s)	654
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	19, 641
TaqI	TCGA	2 cut(s)	478, 573
TasI	AATT	1 cut(s)	654
TatI	WGTACW	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	480
Tru1I	TTAA	2 cut(s)	368, 653
Tru9I	TTAA	2 cut(s)	368, 653
TscAI	CASTG	3 cut(s)	61, 244, 337
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	177, 680
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	3 cut(s)	61, 244, 337
Van91I	CCANNNNNTGG	1 cut(s)	197
XceI	RCATGY	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XspI	CTAG	1 cut(s)	75
ZrmI	AGTACT	1 cut(s)	178
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.