Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Forward (+)

31338087 .. 31341260

Gene Structure 3174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32900.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGACTGCGGATACTACTGTTCTAAGTTACTGGTGGAACTGGAGGTTCTTGATCTGTGCAATATTTATTTTGAGTAGTATAGTTGTAGCCGCAGTTCTTATATGGAAATATGAAGGCTGCAAAAAATCCAGAAGGGAAAGAAGAGAAAATCAACACCAAACAGTAGGATCTCTATATGAGGATGAAGCATGGAGGACATCTCTCAAAGTAATTCATCCTGCTTGGCTTCTTGCGTACAGAATAGTTGCTTTCTTTGTGCTTCTGTCCTTGATAATTACCAATATTGTTCTTAGTGGAGCTGGCGTACTATATTTCTATACTCAGTGGACATTTTGCTTGGTCACAATCTACTTTGGGCTTGGATCTTCACTCTCCATTTATGGATGCTACAGATACCACAATAGAGTTGGTGAGGATGCAGCTGATCATTTGAGAGATGAAGAGCAAGGTAATTATGTTGCTCCAACACTTGGCGAAAATGCAGATACATCTGACATGTCTAAAAATTTTACTGGTGAAGAATTCCCCTCTCGAAAGGCCGCAGGTGTATATGTTTATATCTTTCAAGTCATTTATCAGATGTGCGGAGGTACTGTGGTGCTCACTGATGTTGTATTTTGGCTCATTCTATATCCATTTCTAACAAGCAAATCGTACAAACTGAACTTTATGATGGTCAGTATGCACTCATTCAATGTTGTTTTCCTCCTTGGTGAGACAATTTTGAATAGCTTGCGGTTTCCAATGTTTCGAATCTCATATTTTGTGCTATGGACGGGAATATTCGTGATATTCCAATGGATAATCCACGCTTTTAAAAACATGTGGTGGCCTTATCCATTTCTTGACTTGGCATCCCCATATGCACCCTTATGGTATCTTGGGGTTGGAGTGATGCATATCCCATGCTACGGCGTCTTTGCTTTAATCATTAAAATGAAGCAGTTGTGGTTCTCAAGATCATTCCCAGAGTCTTTTCAGGGTGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

331

Amino Acids

38.48

Weight (kDa)

8.42

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	533
AccB7I	CCANNNNNTGG	1 cut(s)	470
AciI	CCGC	5 cut(s)	8, 90, 540, 585, 736
AclWI	GGATC	2 cut(s)	175, 370
AcsI	RAATTY	2 cut(s)	505, 521
AcyI	GRCGYC	1 cut(s)	915
AfaI	GTAC	4 cut(s)	236, 306, 592, 656
AfiI	CCNNNNNNNGG	2 cut(s)	470, 911
AflIII	ACRYGT	2 cut(s)	495, 822
AgsI	TTSAA	3 cut(s)	566, 694, 727
AluBI	AGCT	3 cut(s)	299, 422, 732
AluI	AGCT	3 cut(s)	299, 422, 732
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	1 cut(s)	710
AlwI	GGATC	2 cut(s)	175, 370
AoxI	GGCC	2 cut(s)	537, 830
ApeKI	GCWGC	2 cut(s)	117, 419
ApoI	RAATTY	2 cut(s)	505, 521
AsuHPI	GGTGA	3 cut(s)	422, 527, 725
AsuII	TTCGAA	1 cut(s)	751
BaeI	ACNNNNGTAYC	3 cut(s)	36, 582, 615
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	104, 431
BccI	CCATC	1 cut(s)	667
BceAI	ACGGC	1 cut(s)	928
BciVI	GTATCC	1 cut(s)	4
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	710
BfmI	CTRYAG	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	533
BfuI	GTATCC	1 cut(s)	4
BisI	GCNGC	4 cut(s)	90, 118, 420, 540
BlsI	GCNGC	4 cut(s)	91, 119, 421, 541
BmsI	GCATC	4 cut(s)	374, 406, 863, 885
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
BpmI	CTGGAG	1 cut(s)	61
Bpu14I	TTCGAA	1 cut(s)	751
BpuEI	CTTGAG	1 cut(s)	940
BsaBI	GATNNNNATC	1 cut(s)	899
BsaHI	GRCGYC	1 cut(s)	915
BsaJI	CCNNGG	1 cut(s)	709
BsaXI	ACNNNNNCTCC	4 cut(s)	288, 318, 579, 609
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 911
Bse1I	ACTGG	3 cut(s)	35, 44, 517
Bse8I	GATNNNNATC	1 cut(s)	899
BseDI	CCNNGG	1 cut(s)	709
BseGI	GGATG	5 cut(s)	187, 214, 389, 421, 854
BseJI	GATNNNNATC	1 cut(s)	899
BseLI	CCNNNNNNNGG	2 cut(s)	470, 911
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	3 cut(s)	35, 44, 517
BseXI	GCAGC	2 cut(s)	104, 431
BshFI	GGCC	2 cut(s)	539, 832
BsiHKAI	GWGCWC	1 cut(s)	603
BslI	CCNNNNNNNGG	2 cut(s)	470, 911
BsmAI	GTCTC	1 cut(s)	710
BsnI	GGCC	2 cut(s)	539, 832
Bsp119I	TTCGAA	1 cut(s)	751
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	5 cut(s)	51, 167, 362, 424, 959
BspACI	CCGC	5 cut(s)	8, 90, 540, 585, 736
BspANI	GGCC	2 cut(s)	539, 832
BspCNI	CTCAG	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	533
BspPI	GGATC	2 cut(s)	175, 370
BspQI	GCTCTTC	1 cut(s)	435
BspT104I	TTCGAA	1 cut(s)	751
BsrI	ACTGG	3 cut(s)	35, 44, 517
BssECI	CCNNGG	1 cut(s)	709
BssMI	GATC	5 cut(s)	51, 167, 362, 424, 959
BssNI	GRCGYC	1 cut(s)	915
BssT1I	CCWWGG	1 cut(s)	709
Bst4CI	ACNGT	3 cut(s)	19, 163, 595
Bst6I	CTCTTC	2 cut(s)	136, 435
BstACI	GRCGYC	1 cut(s)	915
BstBI	TTCGAA	1 cut(s)	751
BstC8I	GCNNGC	2 cut(s)	301, 734
BstDEI	CTNAG	3 cut(s)	23, 290, 321
BstF5I	GGATG	5 cut(s)	187, 214, 389, 421, 854
BstKTI	GATC	5 cut(s)	54, 170, 365, 427, 962
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	5 cut(s)	51, 167, 362, 424, 959
BstNSI	RCATGY	2 cut(s)	499, 826
BstSFI	CTRYAG	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	104, 431
BstX2I	RGATCY	2 cut(s)	167, 362
BstYI	RGATCY	2 cut(s)	167, 362
BsuI	GTATCC	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	539, 832
BtsCI	GGATG	5 cut(s)	187, 214, 389, 421, 854
BtsIMutI	CAGTG	2 cut(s)	329, 603
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	2 cut(s)	301, 734
CseI	GACGC	1 cut(s)	904
Csp6I	GTAC	4 cut(s)	235, 305, 591, 655
CviAII	CATG	4 cut(s)	189, 496, 823, 906
CviQI	GTAC	4 cut(s)	235, 305, 591, 655
DdeI	CTNAG	3 cut(s)	23, 290, 321
DpnI	GATC	5 cut(s)	53, 169, 364, 426, 961
DpnII	GATC	5 cut(s)	51, 167, 362, 424, 959
DraI	TTTAAA	1 cut(s)	817
Eam1104I	CTCTTC	2 cut(s)	136, 435
EarI	CTCTTC	2 cut(s)	136, 435
Eco130I	CCWWGG	1 cut(s)	709
EcoRI	GAATTC	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	709
EcoT22I	ATGCAT	1 cut(s)	900
ErhI	CCWWGG	1 cut(s)	709
FaeI	CATG	4 cut(s)	192, 499, 826, 909
FatI	CATG	4 cut(s)	188, 495, 822, 905
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	90, 118, 420, 540
FokI	GGATG	5 cut(s)	194, 201, 396, 428, 841
Fsp4HI	GCNGC	4 cut(s)	90, 118, 420, 540
GluI	GCNGC	4 cut(s)	90, 118, 420, 540
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	539, 832
HgaI	GACGC	1 cut(s)	904
Hin1I	GRCGYC	1 cut(s)	915
Hin1II	CATG	4 cut(s)	192, 499, 826, 909
HinfI	GANTC	2 cut(s)	753, 971
HphI	GGTGA	3 cut(s)	422, 527, 725
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	493, 579
Hpy188III	TCNNGA	6 cut(s)	49, 129, 531, 787, 845, 957
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	2 cut(s)	107, 126
HpyCH4III	ACNGT	3 cut(s)	19, 163, 595
HpyCH4V	TGCA	7 cut(s)	59, 120, 419, 482, 685, 866, 898
HpyF3I	CTNAG	3 cut(s)	23, 290, 321
Hsp92I	GRCGYC	1 cut(s)	915
Hsp92II	CATG	4 cut(s)	192, 499, 826, 909
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	5 cut(s)	51, 167, 362, 424, 959
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	2 cut(s)	296, 466
LpnPI	CCDG	9 cut(s)	16, 25, 142, 231, 285, 498, 528, 965, 981
Lsp1109I	GCAGC	2 cut(s)	104, 431
LweI	GCATC	4 cut(s)	374, 406, 863, 885
MaeIII	GTNAC	2 cut(s)	26, 340
MalI	GATC	5 cut(s)	53, 169, 364, 426, 961
MboI	GATC	5 cut(s)	51, 167, 362, 424, 959
MboII	GAAGA	4 cut(s)	153, 357, 452, 530
MflI	RGATCY	2 cut(s)	167, 362
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	6 cut(s)	210, 273, 451, 505, 521, 720
MlyI	GAGTC	1 cut(s)	980
MmeI	TCCRAC	2 cut(s)	488, 868
MnlI	CCTC	8 cut(s)	36, 172, 186, 406, 538, 581, 716, 981
Mph1103I	ATGCAT	1 cut(s)	900
MseI	TTAA	3 cut(s)	816, 926, 933
MslI	CAYNNNNRTG	2 cut(s)	871, 935
MspA1I	CMGCKG	1 cut(s)	422
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	5 cut(s)	51, 167, 362, 424, 959
NlaIII	CATG	4 cut(s)	192, 499, 826, 909
NmuCI	GTSAC	1 cut(s)	340
NsiI	ATGCAT	1 cut(s)	900
NspI	RCATGY	2 cut(s)	499, 826
NspV	TTCGAA	1 cut(s)	751
PaqCI	CACCTGC	1 cut(s)	533
PciI	ACATGT	2 cut(s)	495, 822
PciSI	GCTCTTC	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	753
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	91, 119, 421, 541
PleI	GAGTC	1 cut(s)	979
PpsI	GAGTC	1 cut(s)	979
PscI	ACATGT	2 cut(s)	495, 822
PsrI	GAACNNNNNNTAC	2 cut(s)	78, 110
PsuI	RGATCY	2 cut(s)	167, 362
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	4 cut(s)	236, 306, 592, 656
RsaNI	GTAC	4 cut(s)	235, 305, 591, 655
RseI	CAYNNNNRTG	2 cut(s)	871, 935
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	3 cut(s)	816, 926, 933
SatI	GCNGC	4 cut(s)	90, 118, 420, 540
Sau3AI	GATC	5 cut(s)	51, 167, 362, 424, 959
SchI	GAGTC	1 cut(s)	980
SduI	GDGCHC	1 cut(s)	603
SetI	ASST	8 cut(s)	47, 301, 424, 451, 547, 592, 734, 992
SfaNI	GCATC	4 cut(s)	374, 406, 863, 885
SfcI	CTRYAG	1 cut(s)	388
SfuI	TTCGAA	1 cut(s)	751
SmiMI	CAYNNNNRTG	2 cut(s)	871, 935
SmlI	CTYRAG	1 cut(s)	955
SmoI	CTYRAG	1 cut(s)	955
Sse9I	AATT	6 cut(s)	210, 273, 451, 505, 521, 720
SsiI	CCGC	5 cut(s)	8, 90, 540, 585, 736
SspI	AATATT	3 cut(s)	63, 283, 783
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	3 cut(s)	19, 163, 595
TaqI	TCGA	2 cut(s)	532, 751
TasI	AATT	6 cut(s)	210, 273, 451, 505, 521, 720
TauI	GCSGC	2 cut(s)	92, 542
TfiI	GAWTC	1 cut(s)	753
Tru1I	TTAA	3 cut(s)	816, 926, 933
Tru9I	TTAA	3 cut(s)	816, 926, 933
TscAI	CASTG	2 cut(s)	329, 610
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	117, 419
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	5 cut(s)	126, 198, 203, 453, 953
TspRI	CASTG	2 cut(s)	329, 610
Van91I	CCANNNNNTGG	1 cut(s)	470
XapI	RAATTY	2 cut(s)	505, 521
XceI	RCATGY	2 cut(s)	499, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
Zsp2I	ATGCAT	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.