Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Forward (+)

26257529 .. 26260890

Gene Structure 3362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G250800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGACTGCCGATACTACTGATCCAAGTTACTGGTTGAACTGGAGGTTCCTCATCTGTGCAATATGGATCGCATCTACTATGGTTGTAGCCTCAATTCTTATATGGAAATATGAAGGTTTCAACAAACTTGGAACGAACAGGAGGGCAGCTCAGCGAGAAACAGTAGGGTCTTTGTATAAGGATGAAGCCTGGAAGACATGCCTTAAAGGAATACATCCCAATTGGTTACTTGCCTATAGAATAATTGCTTTCATTGTGATGTTGGGCTTGATAGTTGCCAATGTTGCTCTTGATGGATTCGGCATCTTTTACTTTTATACACAGTGGACATTTACTTTGGTCACCTTTTATTTTGGGCTGGCTTCTTTGCTCTCTCTTCGTGGAATTTGCAAGTATCGCAATAGAGTTGGTGAGGATGAAGAACGAGGTACTTATGTTGCTCCAACACTTGGGGAGAATAGTAATCCATCCAATGCGTCTAAAAGTTTAACTGACGAGGAATATCATGGCTGTGAAGACGCAGGTGCATGTGTTTATATCTTTCAGATTATTTATCAGATGTGTGGAGGTGCCGTTGCGCTCACTGATTGCATATTTTGGCTCGTTCTGTATCCATTTCTAACAGCTGCAGATTACAAACTGAATTTTATGATTGTCAGTATGCATTCAATCAATGCTGTTTTCCTCCTTGGCGAGGCATTGTTGAATTGCATGCGGTTTCCCTTGTTTCGAATCGCTTACTTTGTGCTATGGACGGGTATATTCGTGATATTTCAGTGGATATTACATGCTTGCAAATCTATGTGGTGGCCCTATCCATTTCTTGACTTGTCATCCTCATATGCTCCTCTATGGTATCTTGGGGTTGGATTGATGCATATCCCATGCTACGGTGTCTTTGCTTTAATAATTAGGATGAAGCAGCTTTTGTTGTCAAGAGCATTCCCGGATTCTTATCAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

36.85

Weight (kDa)

7.5

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	569
AccB7I	CCANNNNNTGG	1 cut(s)	449
AciI	CCGC	1 cut(s)	715
AclWI	GGATC	2 cut(s)	14, 74
AcsI	RAATTY	2 cut(s)	384, 643
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	3 cut(s)	449, 694, 890
AgsI	TTSAA	4 cut(s)	37, 121, 669, 706
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	3 cut(s)	149, 626, 925
AluI	AGCT	3 cut(s)	149, 626, 925
AlwI	GGATC	2 cut(s)	14, 74
AoxI	GGCC	1 cut(s)	809
ApeKI	GCWGC	3 cut(s)	146, 626, 922
ApoI	RAATTY	2 cut(s)	384, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	810
AsuC2I	CCSGG	1 cut(s)	947
AsuHPI	GGTGA	2 cut(s)	334, 422
AsuII	TTCGAA	1 cut(s)	730
BaeI	ACNNNNGTAYC	2 cut(s)	420, 453
BanI	GGYRCC	1 cut(s)	569
BbsI	GAAGAC	2 cut(s)	200, 522
BbvI	GCAGC	3 cut(s)	158, 613, 934
BccI	CCATC	2 cut(s)	287, 475
BceAI	ACGGC	1 cut(s)	557
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	947
BfmI	CTRYAG	2 cut(s)	235, 627
BfuAI	ACCTGC	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	621
BisI	GCNGC	3 cut(s)	147, 627, 923
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	3 cut(s)	148, 628, 924
Bme1390I	CCNGG	2 cut(s)	190, 947
BmgT120I	GGNCC	1 cut(s)	810
BmiI	GGNNCC	2 cut(s)	47, 571
BmrFI	CCNGG	2 cut(s)	190, 947
BmsI	GCATC	3 cut(s)	80, 312, 864
BpiI	GAAGAC	2 cut(s)	200, 522
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BpmI	CTGGAG	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	730
BpuMI	CCSGG	1 cut(s)	947
BsaBI	GATNNNNATC	2 cut(s)	878, 954
BsaJI	CCNNGG	1 cut(s)	688
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	3 cut(s)	449, 694, 890
Bse1I	ACTGG	2 cut(s)	35, 44
Bse8I	GATNNNNATC	2 cut(s)	878, 954
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	688
BseGI	GGATG	6 cut(s)	187, 214, 421, 467, 833, 921
BseJI	GATNNNNATC	2 cut(s)	878, 954
BseLI	CCNNNNNNNGG	3 cut(s)	449, 694, 890
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	2 cut(s)	35, 44
BseRI	GAGGAG	1 cut(s)	837
BseXI	GCAGC	3 cut(s)	158, 613, 934
BshFI	GGCC	1 cut(s)	811
BshNI	GGYRCC	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	947
BslI	CCNNNNNNNGG	3 cut(s)	449, 694, 890
BsmI	GAATGC	2 cut(s)	664, 941
BsnI	GGCC	1 cut(s)	811
Bsp119I	TTCGAA	1 cut(s)	730
Bsp143I	GATC	2 cut(s)	19, 66
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	715
BspANI	GGCC	1 cut(s)	811
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	47, 571
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	512
BspPI	GGATC	2 cut(s)	14, 74
BspT104I	TTCGAA	1 cut(s)	730
BspT107I	GGYRCC	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	35, 44
BssECI	CCNNGG	1 cut(s)	688
BssMI	GATC	2 cut(s)	19, 66
BssT1I	CCWWGG	1 cut(s)	688
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	163, 324, 893
Bst6I	CTCTTC	1 cut(s)	381
BstBI	TTCGAA	1 cut(s)	730
BstC8I	GCNNGC	3 cut(s)	360, 713, 793
BstDEI	CTNAG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	340
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstF5I	GGATG	6 cut(s)	187, 214, 421, 467, 833, 921
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	2 cut(s)	22, 69
BstMBI	GATC	2 cut(s)	19, 66
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 396
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	4 cut(s)	201, 531, 715, 791
BstPI	GGTNACC	1 cut(s)	340
BstSCI	CCNGG	2 cut(s)	188, 945
BstSFI	CTRYAG	2 cut(s)	235, 627
BstV1I	GCAGC	3 cut(s)	158, 613, 934
BstV2I	GAAGAC	2 cut(s)	200, 522
BstXI	CCANNNNNNTGG	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	621
BsuRI	GGCC	1 cut(s)	811
BtsCI	GGATG	6 cut(s)	187, 214, 421, 467, 833, 921
BtsIMutI	CAGTG	3 cut(s)	329, 582, 782
BveI	ACCTGC	1 cut(s)	512
Cac8I	GCNNGC	3 cut(s)	360, 713, 793
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	810
CseI	GACGC	2 cut(s)	465, 527
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	6 cut(s)	198, 506, 528, 712, 788, 885
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	21, 68
DpnII	GATC	2 cut(s)	19, 66
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	688
Eco91I	GGTNACC	1 cut(s)	340
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoO65I	GGTNACC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	688
EcoT22I	ATGCAT	2 cut(s)	666, 879
ErhI	CCWWGG	1 cut(s)	688
FaeI	CATG	6 cut(s)	201, 509, 531, 715, 791, 888
FatI	CATG	6 cut(s)	197, 505, 527, 711, 787, 884
FauNDI	CATATG	1 cut(s)	841
Fnu4HI	GCNGC	3 cut(s)	147, 627, 923
FokI	GGATG	6 cut(s)	194, 201, 428, 454, 820, 928
Fsp4HI	GCNGC	3 cut(s)	147, 627, 923
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	3 cut(s)	147, 627, 923
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	811
HapII	CCGG	1 cut(s)	947
HgaI	GACGC	2 cut(s)	465, 527
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	6 cut(s)	201, 509, 531, 715, 791, 888
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HinfI	GANTC	3 cut(s)	297, 732, 950
HpaII	CCGG	1 cut(s)	947
HphI	GGTGA	2 cut(s)	334, 422
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	3 cut(s)	546, 558, 960
Hpy188III	TCNNGA	4 cut(s)	290, 766, 824, 936
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	3 cut(s)	163, 324, 893
HpyCH4V	TGCA	9 cut(s)	59, 390, 527, 591, 629, 664, 711, 795, 877
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 396
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	6 cut(s)	201, 509, 531, 715, 791, 888
HspAI	GCGC	1 cut(s)	578
Kzo9I	GATC	2 cut(s)	19, 66
LmnI	GCTCC	2 cut(s)	445, 850
LpnPI	CCDG	8 cut(s)	16, 25, 124, 175, 202, 344, 507, 960
Lsp1109I	GCAGC	3 cut(s)	158, 613, 934
LweI	GCATC	3 cut(s)	80, 312, 864
MaeIII	GTNAC	3 cut(s)	26, 225, 340
MalI	GATC	2 cut(s)	21, 68
MboI	GATC	2 cut(s)	19, 66
MboII	GAAGA	4 cut(s)	205, 368, 431, 527
MfeI	CAATTG	1 cut(s)	220
MluCI	AATT	8 cut(s)	93, 220, 243, 384, 643, 706, 909, 961
MmeI	TCCRAC	2 cut(s)	467, 847
Mph1103I	ATGCAT	2 cut(s)	666, 879
MseI	TTAA	3 cut(s)	204, 488, 905
MslI	CAYNNNNRTG	2 cut(s)	257, 510
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	1 cut(s)	947
MspR9I	CCNGG	2 cut(s)	190, 947
MunI	CAATTG	1 cut(s)	220
Mva1269I	GAATGC	2 cut(s)	664, 941
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	284, 396
NciI	CCSGG	1 cut(s)	947
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	2 cut(s)	19, 66
NlaIII	CATG	6 cut(s)	201, 509, 531, 715, 791, 888
NlaIV	GGNNCC	2 cut(s)	47, 571
NmuCI	GTSAC	1 cut(s)	340
NsiI	ATGCAT	2 cut(s)	666, 879
NspI	RCATGY	4 cut(s)	201, 531, 715, 791
NspV	TTCGAA	1 cut(s)	730
PaeI	GCATGC	1 cut(s)	715
PaqCI	CACCTGC	1 cut(s)	512
PctI	GAATGC	2 cut(s)	664, 941
PfeI	GAWTC	3 cut(s)	297, 732, 950
PflMI	CCANNNNNTGG	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	945
PkrI	GCNGC	3 cut(s)	148, 628, 924
Psp6I	CCWGG	1 cut(s)	188
PspEI	GGTNACC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	47, 571
PspPI	GGNCC	1 cut(s)	810
PstI	CTGCAG	1 cut(s)	631
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
RseI	CAYNNNNRTG	2 cut(s)	257, 510
SaqAI	TTAA	3 cut(s)	204, 488, 905
SatI	GCNGC	3 cut(s)	147, 627, 923
Sau3AI	GATC	2 cut(s)	19, 66
Sau96I	GGNCC	1 cut(s)	810
ScrFI	CCNGG	2 cut(s)	190, 947
SetI	ASST	9 cut(s)	47, 118, 151, 347, 430, 526, 571, 628, 927
SfaNI	GCATC	3 cut(s)	80, 312, 864
SfcI	CTRYAG	2 cut(s)	235, 627
SfuI	TTCGAA	1 cut(s)	730
SmiMI	CAYNNNNRTG	2 cut(s)	257, 510
SphI	GCATGC	1 cut(s)	715
Sse9I	AATT	8 cut(s)	93, 220, 243, 384, 643, 706, 909, 961
SsiI	CCGC	1 cut(s)	715
StyD4I	CCNGG	2 cut(s)	188, 945
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	3 cut(s)	163, 324, 893
TaqI	TCGA	1 cut(s)	730
TasI	AATT	8 cut(s)	93, 220, 243, 384, 643, 706, 909, 961
TfiI	GAWTC	3 cut(s)	297, 732, 950
Tru1I	TTAA	3 cut(s)	204, 488, 905
Tru9I	TTAA	3 cut(s)	204, 488, 905
TscAI	CASTG	3 cut(s)	329, 589, 782
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	3 cut(s)	146, 626, 922
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	5 cut(s)	126, 198, 241, 432, 932
TspRI	CASTG	3 cut(s)	329, 589, 782
Van91I	CCANNNNNTGG	1 cut(s)	449
XagI	CCTNNNNNAGG	1 cut(s)	692
XapI	RAATTY	2 cut(s)	384, 643
XceI	RCATGY	4 cut(s)	201, 531, 715, 791
Zsp2I	ATGCAT	2 cut(s)	666, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.