Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Reverse (-)

3948101 .. 3952069

Gene Structure 3969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGACTACGGATACTACTGTTCTAAGGTATTGGTGGAACTGGAGGTTCTTGATCAGTGCAATATTTATATTGTCTAGTATGGTTCTAGCCGCAGTTCTTATATGGAAATATGAAGGCTGCAAAAAATCCAGAAGGGGAAGAAGAGAAAATCAGCGAGAAACAGTAGGATCTCTATATGAGGATGAAGCCTGGAGGACATCTTTCAAACTTGGATCTTCACTCTCCATTTATGGATGCTACAAATACCGCAATAGAGTTGGTGAGGATGCTGCTGATCGTGTGAGACATGAAGAACGAGGTAGTACTTATGTTGCTCCAACACTTGGCAAAAATGCAGATACATCCAACTCATCTAAAAGTTTCACTGACAGAGAATGTCCCTCCCACAAAGGTGCTGATCTAATTGTTTATATCTTTCAAGTCATTTATCAGATGTGTGCGGGTGCTGTGGTGCTCACTGATGTGGTATTTTGGCTCATTCTGTATCCATTTCTAACAAGCAAAGATTACAAACTGGACTTTATGATGGCCAGTATGCACTCATTCAATCTTGTTTTCCTCCTTGGTGAGACAACTTTGAATAGCTTGCGGTTTCCATTGTTTCGAATCTCATATTTTGTGCTATGGACGGGAGTATTCGTGATTTTCCAATGGATAATCCACGCTTGTAAAAACATGTGGTGGCCTTATCCATTTCTCGACTTGTCATCCTCATATGCACCCTTATGGTATCTTGGGGTTGGAGTGATGCATATCCCATGCTACGGTATCTTTGCTTTAATTATTTGGATGAAGCAGTTGTGGTTCTCAAGATCATTCCCGGAGTCTTTTCAGGGTGAGAGCCCCACCGCCGCCACGAGGAACACCACCACCATCATCACCCGATGTGGTCAACCGGAGCCCTCTGAGAAGACTCGACCTACCAGGATCGATCTCCACCGGACCAACTCACCACCAAACAACTCCACTGCCTACGCCTCCATCAAAGCCATCACATGTGCGTTGCCCCTTGACCCACCATGTCGCCGTCGATCCCACATGCCACAGCGCCCAATAGACCAAGATCCGATAGCAATGTCGTCAAACTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

42.0

Weight (kDa)

9.28

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	323
AciI	CCGC	6 cut(s)	90, 247, 440, 589, 849, 852
AclWI	GGATC	5 cut(s)	175, 220, 935, 1026, 1058
AcoI	YGGCCR	1 cut(s)	528
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	3 cut(s)	323, 764, 858
AflIII	ACRYGT	2 cut(s)	675, 995
AgsI	TTSAA	4 cut(s)	205, 419, 547, 580
AjnI	CCWGG	2 cut(s)	188, 923
AleI	CACNNNNGTG	2 cut(s)	390, 461
AluBI	AGCT	1 cut(s)	585
AluI	AGCT	1 cut(s)	585
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	2 cut(s)	277, 563
AlwI	GGATC	5 cut(s)	175, 220, 935, 1026, 1058
AoxI	GGCC	2 cut(s)	528, 683
ApeKI	GCWGC	2 cut(s)	117, 269
AspLEI	GCGC	1 cut(s)	1050
AspS9I	GGNCC	1 cut(s)	942
AsuC2I	CCSGG	1 cut(s)	821
AsuHPI	GGTGA	5 cut(s)	272, 578, 848, 871, 942
AsuII	TTCGAA	1 cut(s)	604
AvaII	GGWCC	1 cut(s)	942
BaeI	ACNNNNGTAYC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	530
BanII	GRGCYC	2 cut(s)	845, 903
BauI	CACGAG	1 cut(s)	856
BbsI	GAAGAC	1 cut(s)	917
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	104, 256
BccI	CCATC	4 cut(s)	520, 881, 989, 998
BceAI	ACGGC	1 cut(s)	1011
BciT130I	CCWGG	2 cut(s)	190, 925
BciVI	GTATCC	2 cut(s)	4, 495
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	821
BcoDI	GTCTC	2 cut(s)	277, 563
BfaI	CTAG	2 cut(s)	75, 86
BfoI	RGCGCY	1 cut(s)	1051
BfuI	GTATCC	2 cut(s)	4, 495
BisI	GCNGC	4 cut(s)	90, 118, 270, 852
BlsI	GCNGC	4 cut(s)	91, 119, 271, 853
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	3 cut(s)	190, 821, 925
Bme18I	GGWCC	1 cut(s)	942
BmgT120I	GGNCC	1 cut(s)	942
BmiI	GGNNCC	1 cut(s)	900
BmrFI	CCNGG	3 cut(s)	190, 821, 925
BmsI	GCATC	3 cut(s)	224, 256, 738
BpiI	GAAGAC	1 cut(s)	917
BpmI	CTGGAG	2 cut(s)	61, 211
Bpu14I	TTCGAA	1 cut(s)	604
BpuEI	CTTGAG	1 cut(s)	793
BpuMI	CCSGG	1 cut(s)	821
Bsa29I	ATCGAT	1 cut(s)	930
BsaBI	GATNNNNATC	1 cut(s)	752
BsaJI	CCNNGG	1 cut(s)	562
BsaWI	WCCGGW	2 cut(s)	895, 939
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	3 cut(s)	323, 764, 858
Bse1I	ACTGG	3 cut(s)	44, 519, 531
Bse3DI	GCAATG	1 cut(s)	1080
Bse8I	GATNNNNATC	1 cut(s)	752
BseBI	CCWGG	2 cut(s)	190, 925
BseCI	ATCGAT	1 cut(s)	930
BseDI	CCNNGG	1 cut(s)	562
BseGI	GGATG	6 cut(s)	187, 239, 271, 341, 707, 795
BseJI	GATNNNNATC	1 cut(s)	752
BseLI	CCNNNNNNNGG	3 cut(s)	323, 764, 858
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	3 cut(s)	44, 519, 531
BseXI	GCAGC	2 cut(s)	104, 256
BshFI	GGCC	2 cut(s)	530, 685
BshVI	ATCGAT	1 cut(s)	930
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	3 cut(s)	821, 896, 940
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	3 cut(s)	323, 764, 858
BsmAI	GTCTC	2 cut(s)	277, 563
BsmFI	GGGAC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	530, 685
Bsp119I	TTCGAA	1 cut(s)	604
Bsp1286I	GDGCHC	3 cut(s)	456, 845, 903
BspACI	CCGC	6 cut(s)	90, 247, 440, 589, 849, 852
BspANI	GGCC	2 cut(s)	530, 685
BspCNI	CTCAG	1 cut(s)	898
BspDI	ATCGAT	1 cut(s)	930
BspLI	GGNNCC	1 cut(s)	900
BspPI	GGATC	5 cut(s)	175, 220, 935, 1026, 1058
BspT104I	TTCGAA	1 cut(s)	604
BsrDI	GCAATG	1 cut(s)	1080
BsrI	ACTGG	3 cut(s)	44, 519, 531
BssECI	CCNNGG	1 cut(s)	562
BssSI	CACGAG	1 cut(s)	856
BssT1I	CCWWGG	1 cut(s)	562
Bst2BI	CACGAG	1 cut(s)	856
Bst2UI	CCWGG	2 cut(s)	190, 925
Bst4CI	ACNGT	3 cut(s)	19, 163, 767
Bst6I	CTCTTC	1 cut(s)	136
BstBI	TTCGAA	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	2 cut(s)	23, 906
BstF5I	GGATG	6 cut(s)	187, 239, 271, 341, 707, 795
BstH2I	RGCGCY	1 cut(s)	1051
BstHHI	GCGC	1 cut(s)	1050
BstMAI	GTCTC	2 cut(s)	277, 563
BstNI	CCWGG	2 cut(s)	190, 925
BstNSI	RCATGY	3 cut(s)	679, 999, 1042
BstSCI	CCNGG	3 cut(s)	188, 819, 923
BstV1I	GCAGC	2 cut(s)	104, 256
BstV2I	GAAGAC	1 cut(s)	917
BstX2I	RGATCY	3 cut(s)	167, 212, 1063
BstYI	RGATCY	3 cut(s)	167, 212, 1063
Bsu15I	ATCGAT	1 cut(s)	930
BsuI	GTATCC	2 cut(s)	4, 495
BsuRI	GGCC	2 cut(s)	530, 685
BsuTUI	ATCGAT	1 cut(s)	930
BtsCI	GGATG	6 cut(s)	187, 239, 271, 341, 707, 795
BtsI	GCAGTG	1 cut(s)	966
BtsIMutI	CAGTG	4 cut(s)	61, 363, 456, 966
Cac8I	GCNNGC	1 cut(s)	587
CfoI	GCGC	1 cut(s)	1050
Cfr13I	GGNCC	1 cut(s)	942
ClaI	ATCGAT	1 cut(s)	930
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	6 cut(s)	287, 676, 759, 996, 1020, 1039
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	2 cut(s)	23, 906
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	562
Eco24I	GRGCYC	2 cut(s)	845, 903
Eco47I	GGWCC	1 cut(s)	942
EcoRII	CCWGG	2 cut(s)	188, 923
EcoT14I	CCWWGG	1 cut(s)	562
EcoT22I	ATGCAT	1 cut(s)	753
EcoT38I	GRGCYC	2 cut(s)	845, 903
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	6 cut(s)	290, 679, 762, 999, 1023, 1042
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	6 cut(s)	286, 675, 758, 995, 1019, 1038
FauI	CCCGC	1 cut(s)	433
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	90, 118, 270, 852
FokI	GGATG	6 cut(s)	194, 246, 278, 328, 694, 802
FriOI	GRGCYC	2 cut(s)	845, 903
Fsp4HI	GCNGC	4 cut(s)	90, 118, 270, 852
FspBI	CTAG	2 cut(s)	75, 86
GlaI	GCGC	1 cut(s)	1049
GluI	GCNGC	4 cut(s)	90, 118, 270, 852
GsuI	CTGGAG	2 cut(s)	61, 211
HaeII	RGCGCY	1 cut(s)	1051
HaeIII	GGCC	2 cut(s)	530, 685
HapII	CCGG	3 cut(s)	821, 896, 940
HhaI	GCGC	1 cut(s)	1050
Hin1II	CATG	6 cut(s)	290, 679, 762, 999, 1023, 1042
Hin6I	GCGC	1 cut(s)	1048
HinP1I	GCGC	1 cut(s)	1048
HincII	GTYRAC	1 cut(s)	893
HindII	GTYRAC	1 cut(s)	893
HinfI	GANTC	3 cut(s)	606, 824, 913
HpaII	CCGG	3 cut(s)	821, 896, 940
HphI	GGTGA	5 cut(s)	272, 578, 848, 871, 942
Hpy166II	GTNNAC	1 cut(s)	893
Hpy188I	TCNGA	3 cut(s)	432, 907, 1068
Hpy188III	TCNNGA	5 cut(s)	49, 129, 640, 698, 810
Hpy8I	GTNNAC	1 cut(s)	893
Hpy99I	CGWCG	1 cut(s)	1032
HpyAV	CCTTC	2 cut(s)	107, 126
HpyCH4III	ACNGT	3 cut(s)	19, 163, 767
HpyCH4V	TGCA	6 cut(s)	59, 120, 335, 538, 719, 751
HpyF3I	CTNAG	2 cut(s)	23, 906
Hsp92II	CATG	6 cut(s)	290, 679, 762, 999, 1023, 1042
HspAI	GCGC	1 cut(s)	1048
Ksp22I	TGATCA	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	319, 898
Lsp1109I	GCAGC	2 cut(s)	104, 256
LweI	GCATC	3 cut(s)	224, 256, 738
MaeI	CTAG	2 cut(s)	75, 86
MboII	GAAGA	5 cut(s)	150, 153, 207, 302, 922
MflI	RGATCY	3 cut(s)	167, 212, 1063
MhlI	GDGCHC	3 cut(s)	456, 845, 903
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	2 cut(s)	402, 780
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	2 cut(s)	833, 907
MmeI	TCCRAC	3 cut(s)	341, 369, 721
Mox20I	TGGCCA	1 cut(s)	530
Mph1103I	ATGCAT	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	1 cut(s)	779
MslI	CAYNNNNRTG	3 cut(s)	390, 461, 724
Msp20I	TGGCCA	1 cut(s)	530
MspI	CCGG	3 cut(s)	821, 896, 940
MspR9I	CCNGG	3 cut(s)	190, 821, 925
MvaI	CCWGG	2 cut(s)	190, 925
NciI	CCSGG	1 cut(s)	821
NdeI	CATATG	1 cut(s)	715
NlaIII	CATG	6 cut(s)	290, 679, 762, 999, 1023, 1042
NlaIV	GGNNCC	1 cut(s)	900
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	3 cut(s)	679, 999, 1042
NspV	TTCGAA	1 cut(s)	604
OliI	CACNNNNGTG	2 cut(s)	390, 461
PciI	ACATGT	2 cut(s)	675, 995
PfeI	GAWTC	1 cut(s)	606
PflMI	CCANNNNNTGG	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	819
PkrI	GCNGC	4 cut(s)	91, 119, 271, 853
PleI	GAGTC	2 cut(s)	832, 907
PpsI	GAGTC	2 cut(s)	832, 907
PscI	ACATGT	2 cut(s)	675, 995
Psp6I	CCWGG	2 cut(s)	188, 923
PspGI	CCWGG	2 cut(s)	188, 923
PspN4I	GGNNCC	1 cut(s)	900
PspPI	GGNCC	1 cut(s)	942
PsuI	RGATCY	3 cut(s)	167, 212, 1063
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
RseI	CAYNNNNRTG	3 cut(s)	390, 461, 724
SaqAI	TTAA	1 cut(s)	779
SatI	GCNGC	4 cut(s)	90, 118, 270, 852
Sau96I	GGNCC	1 cut(s)	942
ScaI	AGTACT	1 cut(s)	304
SchI	GAGTC	2 cut(s)	833, 907
ScrFI	CCNGG	3 cut(s)	190, 821, 925
SduI	GDGCHC	3 cut(s)	456, 845, 903
SetI	ASST	6 cut(s)	29, 47, 301, 394, 587, 922
SfaNI	GCATC	3 cut(s)	224, 256, 738
SfuI	TTCGAA	1 cut(s)	604
SinI	GGWCC	1 cut(s)	942
SmiMI	CAYNNNNRTG	3 cut(s)	390, 461, 724
SmlI	CTYRAG	1 cut(s)	808
SmoI	CTYRAG	1 cut(s)	808
Sse9I	AATT	2 cut(s)	402, 780
SsiI	CCGC	6 cut(s)	90, 247, 440, 589, 849, 852
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	2 cut(s)	75, 86
StyD4I	CCNGG	3 cut(s)	188, 819, 923
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	3 cut(s)	19, 163, 767
TaqI	TCGA	5 cut(s)	604, 699, 916, 930, 1030
TasI	AATT	2 cut(s)	402, 780
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	2 cut(s)	92, 854
TfiI	GAWTC	1 cut(s)	606
Tru1I	TTAA	1 cut(s)	779
Tru9I	TTAA	1 cut(s)	779
TscAI	CASTG	4 cut(s)	61, 370, 463, 973
TseI	GCWGC	2 cut(s)	117, 269
TspDTI	ATGAA	4 cut(s)	126, 198, 303, 806
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	4 cut(s)	61, 370, 463, 973
Van91I	CCANNNNNTGG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	942
XceI	RCATGY	3 cut(s)	679, 999, 1042
XspI	CTAG	2 cut(s)	75, 86
ZrmI	AGTACT	1 cut(s)	304
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.