RchiOBHm_Chr4g0441931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002061
Physical Location & Seq
Forward (+)
63676596 .. 63679156
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40972

Sequence Viewer

Length: 1062 bp
ATGACTACGGATACTACTGTTCTAAGGTATTGGTGGAACTGGAGGTTCTTGATCAGTGCAATATTTATATTGTCTAGTATGGTTCTAGCCGCAGTTCTTATATGGAAATATGAAGGCTGCAAAAAATCCAGAAGGGGAAGAAGAGAAAATCAGCGAGAAACAGTAGGATCTCTATTTGAGGGTGAAGCCTGGAGGACATCTTTCAAATTAATTCATCCCACTTGGCTTCTTGCTTATAGAGTTGTTGCTTTTGTTTTGCTTCTGTCCTTGATAGTTACCAATTTTGTTCTTGATGGAGCTGGCATACTTTACTTCTATACTCAGTGGACATTTTGTTTGGTCACAATCTATTTTGGGCTTGGATCTTCACTCTCCATTTATGGATGCTACAAATACCGCAATAGAGTTGGTGAGGATGCAGCTGATCGTGTGAGACATGAAGAACGAGGTAGTACTTATGTTGCTCCAACACTTGGCAAAAATGCAGATACATACAACTCATCTAAAAGCTTCACCGACAAAGAATGTCCCTCCCACAAAGGCGCTGGTCTAATTGTTTATATATTTCAAGTCATTTATCAGATGTGTGGGGGTGCTGTGGTGCTCACTGATGTGGTATTTTGGCTCATTCTGTATCCATTTCTAACAAGCAAAGATTACAAACTGGACTTTATGATGGCCAGTATGCACTCATTCAATCTTGTTTTCCTCCTTGGTGAGACAACTTTGAATAGCTTGATGATGGCCAGTATGCACTCATTCAATCTTGTTTTCCTCCTTGGTGAGACAACTTTGAATAGCTTGCGGTTTCCATTGTTTCGAATCTCATATTTTGTGCTATGGACGGGAGTATTCGTGATTTTCCAATGGATAATCCACGCTTGTAAAAACATGTGGTGGCCTTATCCATTTCTCGACTTGTCATCCTCATATGCACCCTTATGGTATCTTGGGGTTGGAGTGATGCATATCCCATGCTACGGTATCTTTGCTTTAATTATTTGGATGAAGCAGTTGTGGTTCTCAAGATCATTACCGGAGTCTTTTCAGGGTGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

41.01

Weight (kDa)

9.05

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 473
AciI CCGC 3 cut(s) 90, 397, 805
AclWI GGATC 2 cut(s) 175, 370
AcoI YGGCCR 2 cut(s) 678, 744
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 2 cut(s) 473, 980
AflIII ACRYGT 1 cut(s) 891
AgsI TTSAA 6 cut(s) 205, 569, 697, 730, 763, 796
AjnI CCWGG 1 cut(s) 188
AleI CACNNNNGTG 1 cut(s) 611
AluBI AGCT 5 cut(s) 299, 422, 510, 735, 801
AluI AGCT 5 cut(s) 299, 422, 510, 735, 801
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 3 cut(s) 427, 713, 779
AlwI GGATC 2 cut(s) 175, 370
AoxI GGCC 3 cut(s) 678, 744, 899
ApeKI GCWGC 2 cut(s) 117, 419
ArsI GACNNNNNNTTYG 2 cut(s) 319, 351
AseI ATTAAT 1 cut(s) 209
AspLEI GCGC 1 cut(s) 545
AsuHPI GGTGA 5 cut(s) 194, 422, 505, 728, 794
AsuII TTCGAA 1 cut(s) 820
BaeI ACNNNNGTAYC 1 cut(s) 36
BalI TGGCCA 2 cut(s) 680, 746
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 2 cut(s) 104, 431
BccI CCATC 3 cut(s) 287, 670, 736
BciT130I CCWGG 1 cut(s) 190
BciVI GTATCC 2 cut(s) 4, 645
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 3 cut(s) 427, 713, 779
BfaI CTAG 2 cut(s) 75, 86
BfoI RGCGCY 1 cut(s) 546
BfuI GTATCC 2 cut(s) 4, 645
BisI GCNGC 3 cut(s) 90, 118, 420
BlsI GCNGC 3 cut(s) 91, 119, 421
BmcAI AGTACT 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 3 cut(s) 374, 406, 954
BpmI CTGGAG 2 cut(s) 61, 211
Bpu14I TTCGAA 1 cut(s) 820
BpuEI CTTGAG 1 cut(s) 1009
BsaBI GATNNNNATC 1 cut(s) 968
BsaJI CCNNGG 2 cut(s) 712, 778
BsaWI WCCGGW 1 cut(s) 1036
BsaXI ACNNNNNCTCC 2 cut(s) 840, 870
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 980
Bse1I ACTGG 4 cut(s) 44, 669, 681, 747
Bse8I GATNNNNATC 1 cut(s) 968
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 2 cut(s) 712, 778
BseGI GGATG 5 cut(s) 214, 389, 421, 923, 1011
BseJI GATNNNNATC 1 cut(s) 968
BseLI CCNNNNNNNGG 2 cut(s) 473, 980
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 4 cut(s) 44, 669, 681, 747
BseXI GCAGC 2 cut(s) 104, 431
BshFI GGCC 3 cut(s) 680, 746, 901
BsiHKAI GWGCWC 1 cut(s) 606
BsiSI CCGG 1 cut(s) 1037
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 2 cut(s) 473, 980
BsmAI GTCTC 3 cut(s) 427, 713, 779
BsmFI GGGAC 1 cut(s) 513
BsnI GGCC 3 cut(s) 680, 746, 901
Bsp119I TTCGAA 1 cut(s) 820
Bsp1286I GDGCHC 1 cut(s) 606
Bsp143I GATC 5 cut(s) 51, 167, 362, 424, 1028
BspACI CCGC 3 cut(s) 90, 397, 805
BspANI GGCC 3 cut(s) 680, 746, 901
BspCNI CTCAG 1 cut(s) 334
BspPI GGATC 2 cut(s) 175, 370
BspT104I TTCGAA 1 cut(s) 820
BsrI ACTGG 4 cut(s) 44, 669, 681, 747
BssECI CCNNGG 2 cut(s) 712, 778
BssMI GATC 5 cut(s) 51, 167, 362, 424, 1028
BssT1I CCWWGG 2 cut(s) 712, 778
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 3 cut(s) 19, 163, 983
Bst6I CTCTTC 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 820
BstC8I GCNNGC 2 cut(s) 301, 803
BstDEI CTNAG 2 cut(s) 23, 321
BstF5I GGATG 5 cut(s) 214, 389, 421, 923, 1011
BstH2I RGCGCY 1 cut(s) 546
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 5 cut(s) 54, 170, 365, 427, 1031
BstMAI GTCTC 3 cut(s) 427, 713, 779
BstMBI GATC 5 cut(s) 51, 167, 362, 424, 1028
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 104, 431
BstX2I RGATCY 2 cut(s) 167, 362
BstYI RGATCY 2 cut(s) 167, 362
BsuI GTATCC 2 cut(s) 4, 645
BsuRI GGCC 3 cut(s) 680, 746, 901
BtsCI GGATG 5 cut(s) 214, 389, 421, 923, 1011
BtsIMutI CAGTG 3 cut(s) 61, 329, 606
Cac8I GCNNGC 2 cut(s) 301, 803
CfoI GCGC 1 cut(s) 545
Csp6I GTAC 1 cut(s) 453
CviAII CATG 3 cut(s) 437, 892, 975
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 2 cut(s) 23, 321
DpnI GATC 5 cut(s) 53, 169, 364, 426, 1030
DpnII GATC 5 cut(s) 51, 167, 362, 424, 1028
EaeI YGGCCR 2 cut(s) 678, 744
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
Eco130I CCWWGG 2 cut(s) 712, 778
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 2 cut(s) 712, 778
EcoT22I ATGCAT 1 cut(s) 969
ErhI CCWWGG 2 cut(s) 712, 778
FaeI CATG 3 cut(s) 440, 895, 978
FaqI GGGAC 1 cut(s) 513
FatI CATG 3 cut(s) 436, 891, 974
FauNDI CATATG 1 cut(s) 931
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 3 cut(s) 90, 118, 420
FokI GGATG 5 cut(s) 201, 396, 428, 910, 1018
Fsp4HI GCNGC 3 cut(s) 90, 118, 420
FspBI CTAG 2 cut(s) 75, 86
GlaI GCGC 1 cut(s) 544
GluI GCNGC 3 cut(s) 90, 118, 420
GsuI CTGGAG 2 cut(s) 61, 211
HaeII RGCGCY 1 cut(s) 546
HaeIII GGCC 3 cut(s) 680, 746, 901
HapII CCGG 1 cut(s) 1037
HhaI GCGC 1 cut(s) 545
Hin1II CATG 3 cut(s) 440, 895, 978
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 2 cut(s) 822, 1040
HpaII CCGG 1 cut(s) 1037
HphI GGTGA 5 cut(s) 194, 422, 505, 728, 794
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 1 cut(s) 582
Hpy188III TCNNGA 6 cut(s) 49, 129, 290, 856, 914, 1026
Hpy8I GTNNAC 1 cut(s) 327
HpyAV CCTTC 2 cut(s) 107, 126
HpyCH4III ACNGT 3 cut(s) 19, 163, 983
HpyCH4V TGCA 8 cut(s) 59, 120, 419, 485, 688, 754, 935, 967
HpyF3I CTNAG 2 cut(s) 23, 321
Hsp92II CATG 3 cut(s) 440, 895, 978
HspAI GCGC 1 cut(s) 543
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 5 cut(s) 51, 167, 362, 424, 1028
LmnI GCTCC 2 cut(s) 296, 469
Lsp1109I GCAGC 2 cut(s) 104, 431
LweI GCATC 3 cut(s) 374, 406, 954
MaeI CTAG 2 cut(s) 75, 86
MaeIII GTNAC 2 cut(s) 274, 340
MalI GATC 5 cut(s) 53, 169, 364, 426, 1030
MboI GATC 5 cut(s) 51, 167, 362, 424, 1028
MboII GAAGA 4 cut(s) 150, 153, 357, 452
MflI RGATCY 2 cut(s) 167, 362
MhlI GDGCHC 1 cut(s) 606
MlsI TGGCCA 2 cut(s) 680, 746
MluCI AATT 5 cut(s) 206, 210, 280, 552, 996
MluNI TGGCCA 2 cut(s) 680, 746
MlyI GAGTC 1 cut(s) 1049
MmeI TCCRAC 2 cut(s) 491, 937
Mox20I TGGCCA 2 cut(s) 680, 746
Mph1103I ATGCAT 1 cut(s) 969
MscI TGGCCA 2 cut(s) 680, 746
MseI TTAA 2 cut(s) 209, 995
MslI CAYNNNNRTG 2 cut(s) 611, 940
Msp20I TGGCCA 2 cut(s) 680, 746
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 1 cut(s) 1037
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
NdeI CATATG 1 cut(s) 931
NdeII GATC 5 cut(s) 51, 167, 362, 424, 1028
NlaIII CATG 3 cut(s) 440, 895, 978
NmuCI GTSAC 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 969
NspI RCATGY 1 cut(s) 895
NspV TTCGAA 1 cut(s) 820
OliI CACNNNNGTG 1 cut(s) 611
PciI ACATGT 1 cut(s) 891
PfeI GAWTC 1 cut(s) 822
PflMI CCANNNNNTGG 1 cut(s) 473
PkrI GCNGC 3 cut(s) 91, 119, 421
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
PscI ACATGT 1 cut(s) 891
PshBI ATTAAT 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PsuI RGATCY 2 cut(s) 167, 362
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
RseI CAYNNNNRTG 2 cut(s) 611, 940
SaqAI TTAA 2 cut(s) 209, 995
SatI GCNGC 3 cut(s) 90, 118, 420
Sau3AI GATC 5 cut(s) 51, 167, 362, 424, 1028
ScaI AGTACT 1 cut(s) 454
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 1 cut(s) 606
SetI ASST 9 cut(s) 29, 47, 301, 424, 451, 512, 737, 803, 1061
SfaNI GCATC 3 cut(s) 374, 406, 954
SfuI TTCGAA 1 cut(s) 820
SmiMI CAYNNNNRTG 2 cut(s) 611, 940
SmlI CTYRAG 1 cut(s) 1024
SmoI CTYRAG 1 cut(s) 1024
Sse9I AATT 5 cut(s) 206, 210, 280, 552, 996
SsiI CCGC 3 cut(s) 90, 397, 805
SspI AATATT 1 cut(s) 63
SspMI CTAG 2 cut(s) 75, 86
StyD4I CCNGG 1 cut(s) 188
StyI CCWWGG 2 cut(s) 712, 778
TaaI ACNGT 3 cut(s) 19, 163, 983
TaqI TCGA 2 cut(s) 820, 915
TasI AATT 5 cut(s) 206, 210, 280, 552, 996
TatI WGTACW 1 cut(s) 452
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 1 cut(s) 822
Tru1I TTAA 2 cut(s) 209, 995
Tru9I TTAA 2 cut(s) 209, 995
TscAI CASTG 3 cut(s) 61, 329, 613
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 2 cut(s) 117, 419
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 4 cut(s) 126, 203, 453, 1022
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 3 cut(s) 61, 329, 613
Van91I CCANNNNNTGG 1 cut(s) 473
VspI ATTAAT 1 cut(s) 209
XceI RCATGY 1 cut(s) 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 542
XspI CTAG 2 cut(s) 75, 86
ZrmI AGTACT 1 cut(s) 454
Zsp2I ATGCAT 1 cut(s) 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.