Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Reverse (-)

9952601 .. 9955703

Gene Structure 3103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGACCACGGATACTAATGTTCTAAGCTATTGGAATAACTGGAGGTTCTTGATCTGTGCAATATTTATATTGAGTAGTATTGTGCTAGCCGCAGTTCTTATATGGAAATATGAAGGCTGCAAAAAATCCAGAAGGGAAAGAAGAGAAAATCAGCGCGAAACAGTAGGATCTCTATATGAGGATGAAGCCTGGAGGACATCTCTCAAAGTAATTCATCCCGCTTGGCTTCTTGCTTACAGATTAATTGCTTTCGTTGTGCTTCTATCCTTGATAGTTACCAATATTGTTCTTGATGGAGTTGGCATACTTTACTTCTACACTCAGTGGACATTTTGTTTGGTTACAATCTATTTTGGGCTTGGATCTTCACTCTCCATTTATGGATGCTACAAATACTGCAGTAGAGTTGGTGAGGATGCAGCTGATCATGTGAGAGACGAAGAGCGAGGTACTTATGTTGCTCCAACACTTGGGGAAAATGCAGATACATCCAACACATATAAAAGTTTTACTGATGAAGAATGTCCCTCTCGCAAAGGCGCTGGTGTATATGTTTATATCTTTCAAGTCATTTATCAGATGTGTGGGGGTGCTGTGGTGCTCACAGATGTTATATTTTGGCTCATTTTGTATCCATTTCTAACAAGCAAAGATTACAAACTGAACTTTATGATGGTCAGTATGCACTCATTCAATGTTGTTTTCCTCCTTGGTGAGACAATATTGAATAGCTTGCGGTTTCCATTGTTTCGGATCTCATATTTTGTGCTATGGACGGGAATATTCGTGATTTTCCAATGGATAATCCATGCTTGTAAAAACATGTGGTGGCCTTATCCATTTCTTGACTTGTCATCCTCATATGCACCCTTATGGTATCTTGGGGTCGGAGTGGCGCATATCCCATGCTACGGCGCCTATGCTTTAATTATTAGGATGAAGCAGCTGTGGTTCTCACGATCATTCCCGGAGTCTTTTCAGGGTGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

38.35

Weight (kDa)

8.0

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	914
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccII	CGCG	1 cut(s)	156
AciI	CCGC	3 cut(s)	90, 219, 736
AclWI	GGATC	3 cut(s)	175, 370, 761
AcyI	GRCGYC	1 cut(s)	915
AdeI	CACNNNGTG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	2 cut(s)	470, 911
AflIII	ACRYGT	1 cut(s)	822
AgsI	TTSAA	3 cut(s)	566, 694, 727
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	4 cut(s)	27, 422, 732, 946
AluI	AGCT	4 cut(s)	27, 422, 732, 946
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	2 cut(s)	429, 710
AlwI	GGATC	3 cut(s)	175, 370, 761
AoxI	GGCC	1 cut(s)	830
ApeKI	GCWGC	3 cut(s)	117, 419, 943
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AseI	ATTAAT	1 cut(s)	242
AspLEI	GCGC	4 cut(s)	156, 542, 898, 917
AsuC2I	CCSGG	1 cut(s)	968
AsuHPI	GGTGA	2 cut(s)	422, 725
AsuNHI	GCTAGC	1 cut(s)	85
BaeI	ACNNNNGTAYC	3 cut(s)	36, 441, 474
BanI	GGYRCC	1 cut(s)	914
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	3 cut(s)	104, 431, 955
BccI	CCATC	2 cut(s)	287, 667
BceAI	ACGGC	1 cut(s)	928
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	2 cut(s)	4, 642
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	968
BcoDI	GTCTC	2 cut(s)	429, 710
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	397
BfoI	RGCGCY	2 cut(s)	543, 918
BfuI	GTATCC	2 cut(s)	4, 642
BisI	GCNGC	4 cut(s)	90, 118, 420, 944
BlsI	GCNGC	4 cut(s)	91, 119, 421, 945
Bme1390I	CCNGG	2 cut(s)	190, 968
BmiI	GGNNCC	1 cut(s)	916
BmrFI	CCNGG	2 cut(s)	190, 968
BmsI	GCATC	2 cut(s)	374, 406
BmtI	GCTAGC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
BpmI	CTGGAG	2 cut(s)	61, 211
BpuMI	CCSGG	1 cut(s)	968
BsaHI	GRCGYC	1 cut(s)	915
BsaJI	CCNNGG	2 cut(s)	6, 709
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 911
Bse1I	ACTGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	6, 709
BseGI	GGATG	7 cut(s)	187, 214, 389, 421, 488, 854, 942
BseLI	CCNNNNNNNGG	2 cut(s)	470, 911
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	104, 431, 955
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	832
BshNI	GGYRCC	1 cut(s)	914
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	968
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	470, 911
BsmAI	GTCTC	2 cut(s)	429, 710
BsmBI	CGTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	1 cut(s)	832
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	6 cut(s)	51, 167, 362, 424, 753, 959
BspACI	CCGC	3 cut(s)	90, 219, 736
BspANI	GGCC	1 cut(s)	832
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	916
BspMAI	CTGCAG	1 cut(s)	401
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	3 cut(s)	175, 370, 761
BspQI	GCTCTTC	1 cut(s)	435
BspT107I	GGYRCC	1 cut(s)	914
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	6, 709
BssMI	GATC	6 cut(s)	51, 167, 362, 424, 753, 959
BssNI	GRCGYC	1 cut(s)	915
BssT1I	CCWWGG	1 cut(s)	709
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	136, 435
BstACI	GRCGYC	1 cut(s)	915
BstC8I	GCNNGC	2 cut(s)	87, 734
BstDEI	CTNAG	2 cut(s)	23, 321
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	7 cut(s)	187, 214, 389, 421, 488, 854, 942
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	2 cut(s)	543, 918
BstHHI	GCGC	4 cut(s)	156, 542, 898, 917
BstKTI	GATC	6 cut(s)	54, 170, 365, 427, 756, 962
BstMAI	GTCTC	2 cut(s)	429, 710
BstMBI	GATC	6 cut(s)	51, 167, 362, 424, 753, 959
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	826
BstSCI	CCNGG	2 cut(s)	188, 966
BstSFI	CTRYAG	1 cut(s)	397
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	3 cut(s)	104, 431, 955
BstX2I	RGATCY	3 cut(s)	167, 362, 753
BstYI	RGATCY	3 cut(s)	167, 362, 753
BsuI	GTATCC	2 cut(s)	4, 642
BsuRI	GGCC	1 cut(s)	832
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	7 cut(s)	187, 214, 389, 421, 488, 854, 942
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	87, 734
CfoI	GCGC	4 cut(s)	156, 542, 898, 917
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	4 cut(s)	428, 809, 823, 906
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	2 cut(s)	23, 321
DinI	GGCGCC	1 cut(s)	916
DpnI	GATC	6 cut(s)	53, 169, 364, 426, 755, 961
DpnII	GATC	6 cut(s)	51, 167, 362, 424, 753, 959
DraIII	CACNNNGTG	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	136, 435
EarI	CTCTTC	2 cut(s)	136, 435
Eco130I	CCWWGG	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	709
EgeI	GGCGCC	1 cut(s)	916
EheI	GGCGCC	1 cut(s)	916
ErhI	CCWWGG	1 cut(s)	709
Esp3I	CGTCTC	1 cut(s)	429
FaeI	CATG	4 cut(s)	431, 812, 826, 909
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	4 cut(s)	427, 808, 822, 905
FauI	CCCGC	1 cut(s)	226
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	90, 118, 420, 944
FokI	GGATG	7 cut(s)	194, 201, 396, 428, 475, 841, 949
Fsp4HI	GCNGC	4 cut(s)	90, 118, 420, 944
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	4 cut(s)	155, 541, 897, 916
GluI	GCNGC	4 cut(s)	90, 118, 420, 944
GsuI	CTGGAG	2 cut(s)	61, 211
HaeII	RGCGCY	2 cut(s)	543, 918
HaeIII	GGCC	1 cut(s)	832
HapII	CCGG	1 cut(s)	968
HhaI	GCGC	4 cut(s)	156, 542, 898, 917
Hin1I	GRCGYC	1 cut(s)	915
Hin1II	CATG	4 cut(s)	431, 812, 826, 909
Hin6I	GCGC	4 cut(s)	154, 540, 896, 915
HinP1I	GCGC	4 cut(s)	154, 540, 896, 915
HinfI	GANTC	1 cut(s)	971
HpaII	CCGG	1 cut(s)	968
HphI	GGTGA	2 cut(s)	422, 725
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	3 cut(s)	579, 753, 890
Hpy188III	TCNNGA	6 cut(s)	49, 129, 290, 787, 845, 957
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	2 cut(s)	107, 126
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	7 cut(s)	59, 120, 399, 419, 482, 685, 866
HpyF3I	CTNAG	2 cut(s)	23, 321
Hsp92I	GRCGYC	1 cut(s)	915
Hsp92II	CATG	4 cut(s)	431, 812, 826, 909
HspAI	GCGC	4 cut(s)	154, 540, 896, 915
KasI	GGCGCC	1 cut(s)	914
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	6 cut(s)	51, 167, 362, 424, 753, 959
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	466
LpnPI	CCDG	7 cut(s)	25, 142, 175, 202, 528, 965, 981
Lsp1109I	GCAGC	3 cut(s)	104, 431, 955
LweI	GCATC	2 cut(s)	374, 406
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	274, 340
MalI	GATC	6 cut(s)	53, 169, 364, 426, 755, 961
MboI	GATC	6 cut(s)	51, 167, 362, 424, 753, 959
MboII	GAAGA	4 cut(s)	153, 357, 452, 530
MflI	RGATCY	3 cut(s)	167, 362, 753
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	3 cut(s)	210, 243, 927
Mly113I	GGCGCC	1 cut(s)	915
MlyI	GAGTC	1 cut(s)	980
MmeI	TCCRAC	3 cut(s)	488, 516, 868
MnlI	CCTC	8 cut(s)	36, 172, 186, 406, 440, 538, 716, 868
MseI	TTAA	2 cut(s)	242, 926
MslI	CAYNNNNRTG	1 cut(s)	871
MspA1I	CMGCKG	2 cut(s)	422, 946
MspI	CCGG	1 cut(s)	968
MspR9I	CCNGG	2 cut(s)	190, 968
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	156
NarI	GGCGCC	1 cut(s)	915
NciI	CCSGG	1 cut(s)	968
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	6 cut(s)	51, 167, 362, 424, 753, 959
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	4 cut(s)	431, 812, 826, 909
NlaIV	GGNNCC	1 cut(s)	916
NspI	RCATGY	1 cut(s)	826
PciI	ACATGT	1 cut(s)	822
PciSI	GCTCTTC	1 cut(s)	435
PflMI	CCANNNNNTGG	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	966
PkrI	GCNGC	4 cut(s)	91, 119, 421, 945
PleI	GAGTC	1 cut(s)	979
PluTI	GGCGCC	1 cut(s)	918
PpsI	GAGTC	1 cut(s)	979
PscI	ACATGT	1 cut(s)	822
PshBI	ATTAAT	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	916
PstI	CTGCAG	1 cut(s)	401
PsuI	RGATCY	3 cut(s)	167, 362, 753
PvuII	CAGCTG	2 cut(s)	422, 946
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	1 cut(s)	871
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	242, 926
SatI	GCNGC	4 cut(s)	90, 118, 420, 944
Sau3AI	GATC	6 cut(s)	51, 167, 362, 424, 753, 959
SchI	GAGTC	1 cut(s)	980
ScrFI	CCNGG	2 cut(s)	190, 968
SduI	GDGCHC	1 cut(s)	603
SetI	ASST	6 cut(s)	29, 47, 424, 451, 734, 948
SfaNI	GCATC	2 cut(s)	374, 406
SfcI	CTRYAG	1 cut(s)	397
SfoI	GGCGCC	1 cut(s)	916
SmiMI	CAYNNNNRTG	1 cut(s)	871
Sse9I	AATT	3 cut(s)	210, 243, 927
SsiI	CCGC	3 cut(s)	90, 219, 736
SspDI	GGCGCC	1 cut(s)	914
SspI	AATATT	4 cut(s)	63, 283, 723, 783
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	188, 966
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	1 cut(s)	163
TasI	AATT	3 cut(s)	210, 243, 927
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	242, 926
Tru9I	TTAA	2 cut(s)	242, 926
TscAI	CASTG	1 cut(s)	329
TseI	GCWGC	3 cut(s)	117, 419, 943
TspDTI	ATGAA	5 cut(s)	126, 198, 203, 531, 953
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	329
Van91I	CCANNNNNTGG	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	242
XceI	RCATGY	1 cut(s)	826
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.