Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Forward (+)

69550195 .. 69553772

Gene Structure 3578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG388900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGACTACGGATACTACTGTTCTAAGGTATTGGTGGAACTGGAGGTTCTTGATCAGTGCAATATTTATATTGTCTAGTATGGTTCTAGCCGCAGTTCTTATATGGAAATATGAAGGCTGCAAAAAATCCAGAAGGGGAAGAAGAGAAAATCAGCGAGAAACAGTAGGATCTCTATTTGAGGGTGAAGCCTGGAGGACATCTTTCAAATTAATTCATCCCACTTGGCTTCTTGCTTATAGAGTTGTTGCTTTTGTTTTGCTTCTGTCCTTGATAGTTACCAATTTTGTTCTTGATGGAGCTGGCATACTTTACTTCTATACTCAGTGGACATTTTGTTTGGTCACAATCTATTTTGGGCTTGGATCTTCACTCTCCATTTATGGATGCTACAAATACCGCAATAGAGTTGGTGAGGATGCAGCTGATCGTGTGAGACATGAAGAACGAGGTAGTACTTATGTTGCTCCAACACTTGGCAAAAATGCAGATACATACAACTCATCTAAAAGCTTCACCGACAAAGAATGTCCCTCCCACAAAGGCGCTGGTCTAATTGTTTATATATTTCAAGTCATTTATCAGATGTGTGGGGGTGCTGTGGTGCTCACTGATGTGGTATTTTGGCTCATTCTGTATCCATTTCTAACAAGCAAAGATTACAAACTGGACTTTATGATGGCCAGTATGCACTCATTCAATCTTGTTTTCCTCCTTGGTGAGACAACTTTGAATAGCTTGATGATGGCCAGTATGCACTCATTCAATCTTGTTTTCCTCCTTGGTGAGACAACTTTGAATAGCTTGCGGTTTCCATTGTTTCGAATCTCATATTTTGTGCTATGGACGGGAGTATTCGTGATTTTCCAATGGATAATCCACGCTTGTAAAAACATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

34.63

Weight (kDa)

9.15

Isoelectric Point (pI)

24.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	473
AciI	CCGC	3 cut(s)	90, 397, 805
AclWI	GGATC	2 cut(s)	175, 370
AcoI	YGGCCR	2 cut(s)	678, 744
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	1 cut(s)	473
AflIII	ACRYGT	1 cut(s)	891
AgsI	TTSAA	6 cut(s)	205, 569, 697, 730, 763, 796
AjnI	CCWGG	1 cut(s)	188
AleI	CACNNNNGTG	1 cut(s)	611
AluBI	AGCT	5 cut(s)	299, 422, 510, 735, 801
AluI	AGCT	5 cut(s)	299, 422, 510, 735, 801
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	3 cut(s)	427, 713, 779
AlwI	GGATC	2 cut(s)	175, 370
AoxI	GGCC	2 cut(s)	678, 744
ApeKI	GCWGC	2 cut(s)	117, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	319, 351
AseI	ATTAAT	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	545
AsuHPI	GGTGA	5 cut(s)	194, 422, 505, 728, 794
AsuII	TTCGAA	1 cut(s)	820
BaeI	ACNNNNGTAYC	1 cut(s)	36
BalI	TGGCCA	2 cut(s)	680, 746
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	104, 431
BccI	CCATC	3 cut(s)	287, 670, 736
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	2 cut(s)	4, 645
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	3 cut(s)	427, 713, 779
BfaI	CTAG	2 cut(s)	75, 86
BfoI	RGCGCY	1 cut(s)	546
BfuI	GTATCC	2 cut(s)	4, 645
BisI	GCNGC	3 cut(s)	90, 118, 420
BlsI	GCNGC	3 cut(s)	91, 119, 421
BmcAI	AGTACT	1 cut(s)	454
Bme1390I	CCNGG	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	374, 406
BpmI	CTGGAG	2 cut(s)	61, 211
Bpu14I	TTCGAA	1 cut(s)	820
BsaJI	CCNNGG	2 cut(s)	712, 778
BsaXI	ACNNNNNCTCC	2 cut(s)	840, 870
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse1I	ACTGG	4 cut(s)	44, 669, 681, 747
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	712, 778
BseGI	GGATG	3 cut(s)	214, 389, 421
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	4 cut(s)	44, 669, 681, 747
BseXI	GCAGC	2 cut(s)	104, 431
BshFI	GGCC	2 cut(s)	680, 746
BsiHKAI	GWGCWC	1 cut(s)	606
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	3 cut(s)	427, 713, 779
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	2 cut(s)	680, 746
Bsp119I	TTCGAA	1 cut(s)	820
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp143I	GATC	4 cut(s)	51, 167, 362, 424
BspACI	CCGC	3 cut(s)	90, 397, 805
BspANI	GGCC	2 cut(s)	680, 746
BspCNI	CTCAG	1 cut(s)	334
BspPI	GGATC	2 cut(s)	175, 370
BspT104I	TTCGAA	1 cut(s)	820
BsrI	ACTGG	4 cut(s)	44, 669, 681, 747
BssECI	CCNNGG	2 cut(s)	712, 778
BssMI	GATC	4 cut(s)	51, 167, 362, 424
BssT1I	CCWWGG	2 cut(s)	712, 778
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	19, 163
Bst6I	CTCTTC	1 cut(s)	136
BstBI	TTCGAA	1 cut(s)	820
BstC8I	GCNNGC	2 cut(s)	301, 803
BstDEI	CTNAG	2 cut(s)	23, 321
BstF5I	GGATG	3 cut(s)	214, 389, 421
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	4 cut(s)	54, 170, 365, 427
BstMAI	GTCTC	3 cut(s)	427, 713, 779
BstMBI	GATC	4 cut(s)	51, 167, 362, 424
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	895
BstSCI	CCNGG	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	104, 431
BstX2I	RGATCY	2 cut(s)	167, 362
BstYI	RGATCY	2 cut(s)	167, 362
BsuI	GTATCC	2 cut(s)	4, 645
BsuRI	GGCC	2 cut(s)	680, 746
BtsCI	GGATG	3 cut(s)	214, 389, 421
BtsIMutI	CAGTG	3 cut(s)	61, 329, 606
Cac8I	GCNNGC	2 cut(s)	301, 803
CfoI	GCGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	2 cut(s)	437, 892
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	2 cut(s)	23, 321
DpnI	GATC	4 cut(s)	53, 169, 364, 426
DpnII	GATC	4 cut(s)	51, 167, 362, 424
EaeI	YGGCCR	2 cut(s)	678, 744
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco130I	CCWWGG	2 cut(s)	712, 778
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	2 cut(s)	712, 778
ErhI	CCWWGG	2 cut(s)	712, 778
FaeI	CATG	2 cut(s)	440, 895
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	2 cut(s)	436, 891
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	90, 118, 420
FokI	GGATG	3 cut(s)	201, 396, 428
Fsp4HI	GCNGC	3 cut(s)	90, 118, 420
FspBI	CTAG	2 cut(s)	75, 86
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	3 cut(s)	90, 118, 420
GsuI	CTGGAG	2 cut(s)	61, 211
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	680, 746
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	2 cut(s)	440, 895
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HindIII	AAGCTT	1 cut(s)	508
HinfI	GANTC	1 cut(s)	822
HphI	GGTGA	5 cut(s)	194, 422, 505, 728, 794
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	582
Hpy188III	TCNNGA	4 cut(s)	49, 129, 290, 856
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	2 cut(s)	107, 126
HpyCH4III	ACNGT	2 cut(s)	19, 163
HpyCH4V	TGCA	6 cut(s)	59, 120, 419, 485, 688, 754
HpyF3I	CTNAG	2 cut(s)	23, 321
Hsp92II	CATG	2 cut(s)	440, 895
HspAI	GCGC	1 cut(s)	543
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	51, 167, 362, 424
LmnI	GCTCC	2 cut(s)	296, 469
LpnPI	CCDG	9 cut(s)	25, 142, 175, 202, 285, 531, 650, 694, 760
Lsp1109I	GCAGC	2 cut(s)	104, 431
LweI	GCATC	2 cut(s)	374, 406
MaeI	CTAG	2 cut(s)	75, 86
MaeIII	GTNAC	2 cut(s)	274, 340
MalI	GATC	4 cut(s)	53, 169, 364, 426
MboI	GATC	4 cut(s)	51, 167, 362, 424
MboII	GAAGA	4 cut(s)	150, 153, 357, 452
MflI	RGATCY	2 cut(s)	167, 362
MhlI	GDGCHC	1 cut(s)	606
MlsI	TGGCCA	2 cut(s)	680, 746
MluCI	AATT	4 cut(s)	206, 210, 280, 552
MluNI	TGGCCA	2 cut(s)	680, 746
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	8 cut(s)	36, 172, 186, 406, 440, 541, 719, 785
Mox20I	TGGCCA	2 cut(s)	680, 746
MscI	TGGCCA	2 cut(s)	680, 746
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	611
Msp20I	TGGCCA	2 cut(s)	680, 746
MspA1I	CMGCKG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
NdeII	GATC	4 cut(s)	51, 167, 362, 424
NlaIII	CATG	2 cut(s)	440, 895
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	895
NspV	TTCGAA	1 cut(s)	820
OliI	CACNNNNGTG	1 cut(s)	611
PciI	ACATGT	1 cut(s)	891
PfeI	GAWTC	1 cut(s)	822
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	3 cut(s)	91, 119, 421
PscI	ACATGT	1 cut(s)	891
PshBI	ATTAAT	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PsuI	RGATCY	2 cut(s)	167, 362
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	3 cut(s)	90, 118, 420
Sau3AI	GATC	4 cut(s)	51, 167, 362, 424
ScaI	AGTACT	1 cut(s)	454
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	606
SetI	ASST	8 cut(s)	29, 47, 301, 424, 451, 512, 737, 803
SfaNI	GCATC	2 cut(s)	374, 406
SfuI	TTCGAA	1 cut(s)	820
SmiMI	CAYNNNNRTG	1 cut(s)	611
Sse9I	AATT	4 cut(s)	206, 210, 280, 552
SsiI	CCGC	3 cut(s)	90, 397, 805
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	2 cut(s)	75, 86
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	2 cut(s)	712, 778
TaaI	ACNGT	2 cut(s)	19, 163
TaqI	TCGA	1 cut(s)	820
TasI	AATT	4 cut(s)	206, 210, 280, 552
TatI	WGTACW	1 cut(s)	452
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	822
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	3 cut(s)	61, 329, 613
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	117, 419
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	126, 203, 453
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	3 cut(s)	61, 329, 613
Van91I	CCANNNNNTGG	1 cut(s)	473
VspI	ATTAAT	1 cut(s)	209
XceI	RCATGY	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XspI	CTAG	2 cut(s)	75, 86
ZrmI	AGTACT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.