Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008316.1

Orthogroup ID

OG0002061

Physical Location & Seq

Genomic Coordinates Reverse (-)

30568 .. 32018

Gene Structure 1451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008316.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgagtttcttaacaggatcatcgagccattcgtggcatccaatcatggctacggctactactgctccaaggtattggtggaactggaggttcttgaccggtgcaatagttatattgtctagtatagttatggctgcagttcttataaggaaatatgaaggctgcaaaaaatccaggagggaaagaagagaaaatcagcgtgaaacagtaggatctttatatgaggatgaagcctggaggacatctttcaaagtaattcatcccgcttggcttcttgcgtacagaatagctgctttcgttgtgcttctggccttgataattaccaattttattcttgatggagctgtcatagttttcttctatactcagtggacattttgtttggtcacaatctattttgcgattggaatttcactctccattcatggatgctacaaataccgcaatagagttggcgaggatgcagctgattatgtgagagatgaagaggaaggtacatatattgctacaacactcggcgaaaatgaagatacattcaacacgtctaaaagttttactgatgaagaatgtccctcccgcaaagccgcaggagtatatgtttatatctttcaagtcatttatcagatgtgtgggggtgctgtggtgctcactgatgttgtattttggtcccttctgtatccaaatctagatagcgaatatgacgaactggactttggtggagttgttgttttgattgctaatagtgtatttgatgagtctgctcaactttcaactgcagattatggccagtatgcactcattcaatcttggtctcctccttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

31.2

Weight (kDa)

4.97

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10660 AT1G10660 AT1G10660 AT1G10660 AT1G70505 AT1G70505 AT1G70505 AT1G70505
fragaria_vesca	FvH4_4g32871 FvH4_4g32900 FvH4_4g32900
malus_domestica	MD13G1094600.v1.1 MD16G1095700.v1.1
prunus_persica	Prupe.1G250800_v2.0.a1 Prupe.1G250800_v2.0.a1
pyrus_communis	pycom13g08240 pycom16g08170
rosa_chinensis	RchiOBHm_Chr4g0441901 RchiOBHm_Chr4g0441931 RchiOBHm_Chr5g0073411
rosa_laevigata	RLG00000006056 RLG00000006058 RLG00000036385
rosa_multiflora	Rmu_sc0001997.1_g000013 Rmu_sc0002501.1_g000043 Rmu_sc0008316.1_g000012 Rmu_sc0011990.1_g000015
rosa_roxburghii	Rroxscaffold_1G00007810 Rroxscaffold_5G00382710 Rroxscaffold_5G00382760
rosa_rugosa	Rorug04G0336900 Rorug04G0337000 Rorug04G0337000 Rorug05G0423500
rosa_samantha	Rh4AG388500 Rh4AG388900 Rh4BG402200 Rh4CG417300 Rh5AG480200 Rh5BG501200 Rh5CG524200
rosa_wichuraiana	Rw4G033550 Rw4G033580 Rw5G044630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AciI	CCGC	4 cut(s)	264, 442, 577, 585
AclWI	GGATC	2 cut(s)	25, 220
AcoI	YGGCCR	1 cut(s)	784
AcsI	RAATTY	1 cut(s)	408
AfaI	GTAC	2 cut(s)	281, 496
AflIII	ACRYGT	1 cut(s)	540
AgeI	ACCGGT	1 cut(s)	98
AgsI	TTSAA	5 cut(s)	250, 538, 611, 771, 803
AjiI	CACGTC	1 cut(s)	543
AjnI	CCWGG	2 cut(s)	173, 233
AjuI	GAANNNNNNNTTGG	2 cut(s)	696, 728
AluBI	AGCT	3 cut(s)	290, 344, 467
AluI	AGCT	3 cut(s)	290, 344, 467
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	1 cut(s)	816
AlwI	GGATC	2 cut(s)	25, 220
AoxI	GGCC	2 cut(s)	309, 784
ApeKI	GCWGC	4 cut(s)	134, 162, 290, 464
ApoI	RAATTY	1 cut(s)	408
ArsI	GACNNNNNNTTYG	2 cut(s)	364, 396
AsiGI	ACCGGT	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	666
AvaII	GGWCC	1 cut(s)	666
BalI	TGGCCA	1 cut(s)	786
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	4 cut(s)	121, 149, 277, 476
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	2 cut(s)	175, 235
BciVI	GTATCC	1 cut(s)	687
BcoDI	GTCTC	1 cut(s)	816
BfaI	CTAG	2 cut(s)	120, 686
BfmI	CTRYAG	2 cut(s)	135, 774
BfuI	GTATCC	1 cut(s)	687
BisI	GCNGC	5 cut(s)	135, 163, 291, 465, 585
BlsI	GCNGC	5 cut(s)	136, 164, 292, 466, 586
Bme1390I	CCNGG	2 cut(s)	175, 235
Bme18I	GGWCC	1 cut(s)	666
BmgBI	CACGTC	1 cut(s)	543
BmgT120I	GGNCC	1 cut(s)	666
BmiI	GGNNCC	1 cut(s)	668
BmrFI	CCNGG	2 cut(s)	175, 235
BmsI	GCATC	3 cut(s)	46, 419, 451
BpmI	CTGGAG	2 cut(s)	106, 256
BsaI	GGTCTC	1 cut(s)	816
BsaJI	CCNNGG	2 cut(s)	68, 818
BsaWI	WCCGGW	1 cut(s)	98
BsaXI	ACNNNNNCTCC	6 cut(s)	49, 79, 582, 612, 711, 741
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	3 cut(s)	89, 711, 787
BseBI	CCWGG	2 cut(s)	175, 235
BseDI	CCNNGG	2 cut(s)	68, 818
BseGI	GGATG	5 cut(s)	37, 232, 259, 434, 466
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	3 cut(s)	89, 711, 787
BseRI	GAGGAG	1 cut(s)	804
BseXI	GCAGC	4 cut(s)	121, 149, 277, 476
BshFI	GGCC	2 cut(s)	311, 786
BshTI	ACCGGT	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	555, 652
BsmAI	GTCTC	1 cut(s)	816
BsmFI	GGGAC	2 cut(s)	555, 652
BsnI	GGCC	2 cut(s)	311, 786
Bso31I	GGTCTC	1 cut(s)	816
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	2 cut(s)	17, 212
BspACI	CCGC	4 cut(s)	264, 442, 577, 585
BspANI	GGCC	2 cut(s)	311, 786
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	668
BspMAI	CTGCAG	2 cut(s)	139, 778
BspPI	GGATC	2 cut(s)	25, 220
BspTNI	GGTCTC	1 cut(s)	816
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	3 cut(s)	89, 711, 787
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	68, 818
BssMI	GATC	2 cut(s)	17, 212
BssT1I	CCWWGG	2 cut(s)	68, 818
Bst2UI	CCWGG	2 cut(s)	175, 235
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	181, 480
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	5 cut(s)	37, 232, 259, 434, 466
BstKTI	GATC	2 cut(s)	20, 215
BstMAI	GTCTC	1 cut(s)	816
BstMBI	GATC	2 cut(s)	17, 212
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	2 cut(s)	175, 235
BstSCI	CCNGG	2 cut(s)	173, 233
BstSFI	CTRYAG	2 cut(s)	135, 774
BstV1I	GCAGC	4 cut(s)	121, 149, 277, 476
BstX2I	RGATCY	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	212
BsuI	GTATCC	1 cut(s)	687
BsuRI	GGCC	2 cut(s)	311, 786
BtrI	CACGTC	1 cut(s)	543
BtsCI	GGATG	5 cut(s)	37, 232, 259, 434, 466
BtsIMutI	CAGTG	2 cut(s)	374, 648
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	666
Csp6I	GTAC	2 cut(s)	280, 495
CspAI	ACCGGT	1 cut(s)	98
CviAII	CATG	2 cut(s)	46, 425
CviQI	GTAC	2 cut(s)	280, 495
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	2 cut(s)	19, 214
DpnII	GATC	2 cut(s)	17, 212
EaeI	YGGCCR	1 cut(s)	784
Eam1104I	CTCTTC	2 cut(s)	181, 480
EarI	CTCTTC	2 cut(s)	181, 480
Eco130I	CCWWGG	2 cut(s)	68, 818
Eco31I	GGTCTC	1 cut(s)	816
Eco47I	GGWCC	1 cut(s)	666
EcoRII	CCWGG	2 cut(s)	173, 233
EcoT14I	CCWWGG	2 cut(s)	68, 818
ErhI	CCWWGG	2 cut(s)	68, 818
FaeI	CATG	2 cut(s)	49, 428
FaqI	GGGAC	2 cut(s)	555, 652
FatI	CATG	2 cut(s)	45, 424
FauI	CCCGC	2 cut(s)	271, 584
Fnu4HI	GCNGC	5 cut(s)	135, 163, 291, 465, 585
FokI	GGATG	5 cut(s)	24, 239, 246, 441, 473
Fsp4HI	GCNGC	5 cut(s)	135, 163, 291, 465, 585
FspBI	CTAG	2 cut(s)	120, 686
GluI	GCNGC	5 cut(s)	135, 163, 291, 465, 585
GsuI	CTGGAG	2 cut(s)	106, 256
HaeIII	GGCC	2 cut(s)	311, 786
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	2 cut(s)	49, 428
HinfI	GANTC	1 cut(s)	755
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	1 cut(s)	624
Hpy188III	TCNNGA	3 cut(s)	94, 335, 686
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	3 cut(s)	152, 485, 680
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	6 cut(s)	104, 137, 165, 464, 776, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	2 cut(s)	49, 428
Kzo9I	GATC	2 cut(s)	17, 212
LmnI	GCTCC	2 cut(s)	70, 341
Lsp1109I	GCAGC	4 cut(s)	121, 149, 277, 476
LweI	GCATC	3 cut(s)	46, 419, 451
MaeI	CTAG	2 cut(s)	120, 686
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	2 cut(s)	19, 214
MboI	GATC	2 cut(s)	17, 212
MboII	GAAGA	5 cut(s)	198, 349, 497, 539, 575
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	648
MlsI	TGGCCA	1 cut(s)	786
MluCI	AATT	4 cut(s)	255, 318, 325, 408
MluNI	TGGCCA	1 cut(s)	786
MlyI	GAGTC	1 cut(s)	764
MnlI	CCTC	8 cut(s)	81, 171, 217, 231, 451, 481, 583, 825
Mox20I	TGGCCA	1 cut(s)	786
MscI	TGGCCA	1 cut(s)	786
MseI	TTAA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	786
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	175, 235
MvaI	CCWGG	2 cut(s)	175, 235
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	17, 212
NlaIII	CATG	2 cut(s)	49, 428
NlaIV	GGNNCC	1 cut(s)	668
NmeAIII	GCCGAG	1 cut(s)	495
NmuCI	GTSAC	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	173
PinAI	ACCGGT	1 cut(s)	98
PkrI	GCNGC	5 cut(s)	136, 164, 292, 466, 586
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
PsiI	TTATAA	1 cut(s)	146
Psp6I	CCWGG	2 cut(s)	173, 233
PspGI	CCWGG	2 cut(s)	173, 233
PspN4I	GGNNCC	1 cut(s)	668
PspPI	GGNCC	1 cut(s)	666
PstI	CTGCAG	2 cut(s)	139, 778
PsuI	RGATCY	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	2 cut(s)	281, 496
RsaNI	GTAC	2 cut(s)	280, 495
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	5 cut(s)	135, 163, 291, 465, 585
Sau3AI	GATC	2 cut(s)	17, 212
Sau96I	GGNCC	1 cut(s)	666
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	2 cut(s)	175, 235
SduI	GDGCHC	1 cut(s)	648
SetI	ASST	7 cut(s)	74, 92, 292, 346, 469, 496, 545
SfaNI	GCATC	3 cut(s)	46, 419, 451
SfcI	CTRYAG	2 cut(s)	135, 774
SinI	GGWCC	1 cut(s)	666
Sse9I	AATT	4 cut(s)	255, 318, 325, 408
SsiI	CCGC	4 cut(s)	264, 442, 577, 585
SspMI	CTAG	2 cut(s)	120, 686
StyD4I	CCNGG	2 cut(s)	173, 233
StyI	CCWWGG	2 cut(s)	68, 818
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	1 cut(s)	23
TasI	AATT	4 cut(s)	255, 318, 325, 408
TauI	GCSGC	1 cut(s)	587
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	2 cut(s)	374, 655
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	4 cut(s)	134, 162, 290, 464
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	7 cut(s)	171, 243, 248, 413, 498, 540, 576
TspRI	CASTG	2 cut(s)	374, 655
VpaK11BI	GGWCC	1 cut(s)	666
XapI	RAATTY	1 cut(s)	408
XbaI	TCTAGA	1 cut(s)	685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	75
XspI	CTAG	2 cut(s)	120, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.