AT1G11940

Core-2 I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002602
Physical Location & Seq
Reverse (-)
4031534 .. 4034155
2622 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11940.2

Sequence Viewer

Length: 1152 bp
ATGACGAAGAAATCACAGCCGCAGATTCCGCCTCCATTGTCCCGTCGCGGCGGCGTCGTGTGGCTGGGATGGAAACTCGTAATCGCTTTCTCCGTCGCGCTTTGCCTTCTTGCTCTTCTTCGAATCCAACTACAGTACAATTCCTTCACGACATTGTCGTTTCCACTCTCCGTCGCGAGATCTCAGACACCGCTTCACAAATACTCCGGTGATCGTCCCAAGCTCGCTTTCCTTTTCTTAGCTCGCCGTGATCTCCCACTTGATTTTATGTGGGATAGATTCTTCAAGGGAGTGGATCATGCGAATTTCTCAATTTATATACATTCAGTACCTGGTTTCGTGTTCAATGAAGAAACTACACGATCACAGTATTTCTATAATCGCCAATTGAACAATAGCATTAAGGTAGTATGGGGAGAATCAAGCATGATTGAAGCAGAAAGATTGTTGCTTGCATCTGCTTTAGAGGATCACTCCAATCAAAGATTTGTTCTTCTCTCTGACAGATGTGCTCCATTATATGACTTTGGCTATATATACAAATATCTTATCTCTTCACCGAGGAGTTTTGTGGATAGTTTTCTTCATACTAAAGAGACACGGTACAGTGTGAAAATGTCTCCTGTCATACCTGAAGAGAAATGGCGAAAAGGATCCCAGTGGATAGCTTTGATCAGAAGTCATGCAGAGGTCATTGTAAATGATGGTATCGTATTCCCAGTTTTTAAGGAATTCTGCAAGAGATGTCCACCTTTAGGTACCAATGAGGCATGGTTGTTTCTTAAACAGAAGCGACGCAACTGCATCCCCGATGAACACTATGTGCAAACATTGCTTACGATGCAAGGACTAGAGAGTGAAATGGAACGAAGAACAGTGACATACACTGTATGGAACGTTTCAGGTACAAAATATGAAGCCAAATCTTGGCATCCCGTCACTTTCACATTGGAAAACTCCGGCCCTGAGGAAATAAAAGAAATAAAGAAAATAGACCATGTCTATTACGAGTCTGAATCTCGAACGGAATGGTGTAAGGCGGATTCGAAACCCGTCCCATGCTTTCTCTTTGCAAGGAAGTTCACGAATGAAGCTGCTATGCGCATTGTGAGTGAAGGACTAATAGGATCATCAGCAAACAAAACCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

383

Amino Acids

44.42

Weight (kDa)

9.21

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 75 - 251 4e-54 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1150
Acc16I TGCGCA 1 cut(s) 1103
Acc65I GGTACC 1 cut(s) 758
AccB1I GGYRCC 1 cut(s) 758
AccB7I CCANNNNNTGG 1 cut(s) 927
AccII CGCG 3 cut(s) 48, 98, 176
AciI CCGC 6 cut(s) 20, 29, 48, 51, 191, 1040
AclI AACGTT 1 cut(s) 897
AclWI GGATC 5 cut(s) 303, 477, 648, 661, 1135
AcsI RAATTY 2 cut(s) 304, 731
AcuI CTGAAG 1 cut(s) 654
AcyI GRCGYC 1 cut(s) 54
AdeI CACNNNGTG 1 cut(s) 823
AfaI GTAC 5 cut(s) 137, 330, 605, 760, 907
AfiI CCNNNNNNNGG 2 cut(s) 755, 927
AgsI TTSAA 4 cut(s) 286, 346, 391, 434
AjnI CCWGG 1 cut(s) 331
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 4 cut(s) 223, 242, 668, 1094
AluI AGCT 4 cut(s) 223, 242, 668, 1094
Alw21I GWGCWC 1 cut(s) 514
Alw26I GTCTC 2 cut(s) 590, 624
AlwI GGATC 5 cut(s) 303, 477, 648, 661, 1135
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 1 cut(s) 961
ApeKI GCWGC 1 cut(s) 1094
ApoI RAATTY 2 cut(s) 304, 731
Asp718I GGTACC 1 cut(s) 758
AspLEI GCGC 2 cut(s) 100, 1104
AspS9I GGNCC 1 cut(s) 962
AsuHPI GGTGA 2 cut(s) 221, 549
AsuII TTCGAA 2 cut(s) 121, 1046
AxyI CCTNAGG 1 cut(s) 966
BamHI GGATCC 1 cut(s) 653
BanI GGYRCC 1 cut(s) 758
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
Bbv12I GWGCWC 1 cut(s) 514
BbvI GCAGC 1 cut(s) 1081
BccI CCATC 2 cut(s) 63, 698
BceAI ACGGC 1 cut(s) 231
BcgI CGANNNNNNTGC 2 cut(s) 783, 817
BciT130I CCWGG 1 cut(s) 333
BclI TGATCA 1 cut(s) 672
BcoDI GTCTC 2 cut(s) 590, 624
BfaI CTAG 1 cut(s) 851
BfmI CTRYAG 1 cut(s) 131
BglII AGATCT 1 cut(s) 179
BisI GCNGC 4 cut(s) 20, 49, 52, 1095
BlsI GCNGC 4 cut(s) 21, 50, 53, 1096
Bme1390I CCNGG 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 962
BmiI GGNNCC 2 cut(s) 655, 760
BmrFI CCNGG 1 cut(s) 333
BmrI ACTGGG 2 cut(s) 652, 713
BmsI GCATC 4 cut(s) 464, 813, 831, 940
BmuI ACTGGG 2 cut(s) 652, 713
BplI GAGNNNNNCTC 2 cut(s) 458, 490
Bpu14I TTCGAA 2 cut(s) 121, 1046
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 560
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 755, 927
Bse1I ACTGG 2 cut(s) 658, 719
Bse21I CCTNAGG 1 cut(s) 966
Bse3DI GCAATG 1 cut(s) 830
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 560
BseGI GGATG 3 cut(s) 74, 804, 931
BseLI CCNNNNNNNGG 2 cut(s) 755, 927
BseMI GCAATG 1 cut(s) 830
BseMII CTCAG 2 cut(s) 197, 957
BseNI ACTGG 2 cut(s) 658, 719
BseRI GAGGAG 1 cut(s) 577
BseXI GCAGC 1 cut(s) 1081
BseYI CCCAGC 1 cut(s) 64
Bsh1236I CGCG 3 cut(s) 48, 98, 176
BshFI GGCC 1 cut(s) 963
BshNI GGYRCC 1 cut(s) 758
BsiHKAI GWGCWC 1 cut(s) 514
BsiSI CCGG 2 cut(s) 207, 960
BslFI GGGAC 3 cut(s) 25, 201, 1040
BslI CCNNNNNNNGG 2 cut(s) 755, 927
BsmAI GTCTC 2 cut(s) 590, 624
BsmFI GGGAC 3 cut(s) 25, 201, 1040
BsnI GGCC 1 cut(s) 963
Bsp119I TTCGAA 2 cut(s) 121, 1046
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 9 cut(s) 179, 211, 250, 295, 362, 469, 653, 672, 1127
Bsp68I TCGCGA 1 cut(s) 176
BspACI CCGC 6 cut(s) 20, 29, 48, 51, 191, 1040
BspANI GGCC 1 cut(s) 963
BspCNI CTCAG 2 cut(s) 196, 958
BspFNI CGCG 3 cut(s) 48, 98, 176
BspLI GGNNCC 2 cut(s) 655, 760
BspPI GGATC 5 cut(s) 303, 477, 648, 661, 1135
BspQI GCTCTTC 1 cut(s) 120
BspT104I TTCGAA 2 cut(s) 121, 1046
BspT107I GGYRCC 1 cut(s) 758
BsrDI GCAATG 1 cut(s) 830
BsrI ACTGG 2 cut(s) 658, 719
BssECI CCNNGG 1 cut(s) 560
BssMI GATC 9 cut(s) 179, 211, 250, 295, 362, 469, 653, 672, 1127
BssNI GRCGYC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 6 cut(s) 135, 369, 603, 608, 877, 889
Bst6I CTCTTC 3 cut(s) 120, 559, 630
BstACI GRCGYC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 832
BstBI TTCGAA 2 cut(s) 121, 1046
BstC8I GCNNGC 3 cut(s) 225, 244, 453
BstDEI CTNAG 3 cut(s) 183, 238, 966
BstF5I GGATG 3 cut(s) 74, 804, 931
BstFNI CGCG 3 cut(s) 48, 98, 176
BstHHI GCGC 2 cut(s) 100, 1104
BstKTI GATC 9 cut(s) 182, 214, 253, 298, 365, 472, 656, 675, 1130
BstMAI GTCTC 2 cut(s) 590, 624
BstMBI GATC 9 cut(s) 179, 211, 250, 295, 362, 469, 653, 672, 1127
BstMWI GCNNNNNNNGC 3 cut(s) 28, 832, 841
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 131
BstUI CGCG 3 cut(s) 48, 98, 176
BstV1I GCAGC 1 cut(s) 1081
BstX2I RGATCY 2 cut(s) 179, 653
BstYI RGATCY 2 cut(s) 179, 653
Bsu36I CCTNAGG 1 cut(s) 966
BsuRI GGCC 1 cut(s) 963
BtsCI GGATG 3 cut(s) 74, 804, 931
BtsIMutI CAGTG 4 cut(s) 613, 665, 882, 885
BtuMI TCGCGA 1 cut(s) 176
Cac8I GCNNGC 3 cut(s) 225, 244, 453
CaiI CAGNNNCTG 1 cut(s) 332
CfoI GCGC 2 cut(s) 100, 1104
Cfr13I GGNCC 1 cut(s) 962
CseI GACGC 2 cut(s) 43, 804
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 5 cut(s) 136, 329, 604, 759, 906
CviAII CATG 6 cut(s) 299, 427, 683, 771, 998, 1059
CviJI RGCY 9 cut(s) 19, 64, 223, 242, 531, 668, 920, 963, 1094
CviKI_1 RGCY 9 cut(s) 19, 64, 223, 242, 531, 668, 920, 963, 1094
CviQI GTAC 5 cut(s) 136, 329, 604, 759, 906
DdeI CTNAG 3 cut(s) 183, 238, 966
DpnI GATC 9 cut(s) 181, 213, 252, 297, 364, 471, 655, 674, 1129
DpnII GATC 9 cut(s) 179, 211, 250, 295, 362, 469, 653, 672, 1127
DraIII CACNNNGTG 1 cut(s) 823
Eam1104I CTCTTC 3 cut(s) 120, 559, 630
EarI CTCTTC 3 cut(s) 120, 559, 630
EciI GGCGGA 2 cut(s) 18, 1055
Eco57I CTGAAG 1 cut(s) 654
Eco81I CCTNAGG 1 cut(s) 966
EcoRI GAATTC 1 cut(s) 731
EcoRII CCWGG 1 cut(s) 331
FaeI CATG 6 cut(s) 302, 430, 686, 774, 1001, 1062
FaqI GGGAC 3 cut(s) 25, 201, 1040
FatI CATG 6 cut(s) 298, 426, 682, 770, 997, 1058
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 4 cut(s) 20, 49, 52, 1095
FokI GGATG 3 cut(s) 81, 791, 918
Fsp4HI GCNGC 4 cut(s) 20, 49, 52, 1095
FspAI RTGCGCAY 1 cut(s) 1103
FspBI CTAG 1 cut(s) 851
FspI TGCGCA 1 cut(s) 1103
GlaI GCGC 2 cut(s) 99, 1103
GluI GCNGC 4 cut(s) 20, 49, 52, 1095
GsaI CCCAGC 1 cut(s) 68
HaeIII GGCC 1 cut(s) 963
HapII CCGG 2 cut(s) 207, 960
HgaI GACGC 2 cut(s) 43, 804
HhaI GCGC 2 cut(s) 100, 1104
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 6 cut(s) 302, 430, 686, 774, 1001, 1062
Hin6I GCGC 2 cut(s) 98, 1102
HinP1I GCGC 2 cut(s) 98, 1102
HinfI GANTC 7 cut(s) 25, 123, 279, 419, 1010, 1016, 1043
HpaII CCGG 2 cut(s) 207, 960
HphI GGTGA 2 cut(s) 221, 549
Hpy166II GTNNAC 2 cut(s) 749, 1083
Hpy188I TCNGA 4 cut(s) 186, 502, 677, 1015
Hpy188III TCNNGA 4 cut(s) 148, 175, 1020, 1084
Hpy8I GTNNAC 2 cut(s) 749, 1083
Hpy99I CGWCG 5 cut(s) 48, 59, 98, 176, 798
HpyAV CCTTC 3 cut(s) 116, 154, 1109
HpyCH4III ACNGT 6 cut(s) 135, 369, 603, 608, 877, 889
HpyCH4IV ACGT 1 cut(s) 897
HpyCH4V TGCA 7 cut(s) 455, 686, 738, 804, 826, 844, 1073
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 832, 841
HpyF3I CTNAG 3 cut(s) 183, 238, 966
HpySE526I ACGT 1 cut(s) 897
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 6 cut(s) 302, 430, 686, 774, 1001, 1062
HspAI GCGC 2 cut(s) 98, 1102
KpnI GGTACC 1 cut(s) 762
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 9 cut(s) 179, 211, 250, 295, 362, 469, 653, 672, 1127
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 1 cut(s) 1081
LweI GCATC 4 cut(s) 464, 813, 831, 940
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 1 cut(s) 851
MaeII ACGT 1 cut(s) 897
MaeIII GTNAC 2 cut(s) 877, 937
MalI GATC 9 cut(s) 181, 213, 252, 297, 364, 471, 655, 674, 1129
MboI GATC 9 cut(s) 179, 211, 250, 295, 362, 469, 653, 672, 1127
MfeI CAATTG 1 cut(s) 386
MflI RGATCY 2 cut(s) 179, 653
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 5 cut(s) 139, 304, 312, 386, 731
MlyI GAGTC 1 cut(s) 1019
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 6 cut(s) 42, 460, 555, 682, 760, 961
MseI TTAA 3 cut(s) 402, 726, 783
MspI CCGG 2 cut(s) 207, 960
MspR9I CCNGG 1 cut(s) 333
MunI CAATTG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 333
MvnI CGCG 3 cut(s) 48, 98, 176
MwoI GCNNNNNNNGC 3 cut(s) 28, 832, 841
NdeII GATC 9 cut(s) 179, 211, 250, 295, 362, 469, 653, 672, 1127
NlaIII CATG 6 cut(s) 302, 430, 686, 774, 1001, 1062
NlaIV GGNNCC 2 cut(s) 655, 760
NmuCI GTSAC 2 cut(s) 877, 937
NruI TCGCGA 1 cut(s) 176
NsbI TGCGCA 1 cut(s) 1103
NspV TTCGAA 2 cut(s) 121, 1046
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 155
PfeI GAWTC 6 cut(s) 25, 123, 279, 419, 1016, 1043
PflFI GACNNNGTC 2 cut(s) 154, 998
PflMI CCANNNNNTGG 1 cut(s) 927
PkrI GCNGC 4 cut(s) 21, 50, 53, 1096
PleI GAGTC 1 cut(s) 1018
PpsI GAGTC 1 cut(s) 1018
PsiI TTATAA 1 cut(s) 1150
Psp1406I AACGTT 1 cut(s) 897
Psp6I CCWGG 1 cut(s) 331
PspFI CCCAGC 1 cut(s) 64
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 655, 760
PspPI GGNCC 1 cut(s) 962
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 2 cut(s) 179, 653
PsyI GACNNNGTC 2 cut(s) 154, 998
RruI TCGCGA 1 cut(s) 176
RsaI GTAC 5 cut(s) 137, 330, 605, 760, 907
RsaNI GTAC 5 cut(s) 136, 329, 604, 759, 906
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 402, 726, 783
SatI GCNGC 4 cut(s) 20, 49, 52, 1095
Sau3AI GATC 9 cut(s) 179, 211, 250, 295, 362, 469, 653, 672, 1127
Sau96I GGNCC 1 cut(s) 962
SchI GAGTC 1 cut(s) 1019
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 514
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 4 cut(s) 464, 813, 831, 940
SfcI CTRYAG 1 cut(s) 131
SfuI TTCGAA 2 cut(s) 121, 1046
Sse9I AATT 5 cut(s) 139, 304, 312, 386, 731
SsiI CCGC 6 cut(s) 20, 29, 48, 51, 191, 1040
SspMI CTAG 1 cut(s) 851
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 6 cut(s) 135, 369, 603, 608, 877, 889
TaiI ACGT 1 cut(s) 900
TaqI TCGA 3 cut(s) 121, 1021, 1046
TasI AATT 5 cut(s) 139, 304, 312, 386, 731
TatI WGTACW 1 cut(s) 135
TauI GCSGC 3 cut(s) 22, 51, 54
TfiI GAWTC 6 cut(s) 25, 123, 279, 419, 1016, 1043
Tru1I TTAA 3 cut(s) 402, 726, 783
Tru9I TTAA 3 cut(s) 402, 726, 783
TscAI CASTG 4 cut(s) 613, 665, 882, 892
TseFI GTSAC 2 cut(s) 877, 937
TseI GCWGC 1 cut(s) 1094
Tsp45I GTSAC 2 cut(s) 877, 937
TspDTI ATGAA 5 cut(s) 363, 575, 828, 930, 1104
TspGWI ACGGA 3 cut(s) 82, 160, 1040
TspRI CASTG 4 cut(s) 613, 665, 882, 892
Tth111I GACNNNGTC 2 cut(s) 154, 998
Van91I CCANNNNNTGG 1 cut(s) 927
XapI RAATTY 2 cut(s) 304, 731
XspI CTAG 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.